Gvermi12795.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12795.t1
Unique NameGvermi12795.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length657
Homology
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BLAST of Gvermi12795.t1 vs. uniprot
Match: A0A2V3IES9_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES9_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 5.460e-39
Identity = 106/198 (53.54%), Postives = 111/198 (56.06%), Query Frame = 0 
Query:   16 ALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAAWGAPVTLQPVQSIWANTGVWTADDPKR---------------------------------------------------------------LVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIM 150
            ALVR+ AAAQ       RA + TAARALDRAVAAAWGAPV+L PVQSIWANTGVWTADDPKR                                                               LVR LEN LRRRK+DRARDILFEN    VF TRHYNSLLDA VKANRL DAE+LFAEF RN L  DVASYSIM
Sbjct:   68 ALVRNTAAAQXXXXXXPRAPYATAARALDRAVAAAWGAPVSLHPVQSIWANTGVWTADDPKRRRRDPHRPVPPAEAVLCPTVEPPSAAHSAPPLSTLIPPSAPTPLRTHVNSAQHTPPAKSSDPDLVRLLENSLRRRKLDRARDILFENFGTAVFHTRHYNSLLDAFVKANRLPDAELLFAEFGRNSLTPDVASYSIM 265
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BLAST of Gvermi12795.t1 vs. uniprot
Match: R7QMM7_CHOCR (PPR_long domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMM7_CHOCR)

HSP 1 Score: 100 bits (250), Expect = 2.130e-18
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 0 
Query:   62 SIWANTGVWTADDPKRLVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMI 151
            SI  + G  T  D   +VRQLENC+RRRK+D+ARDIL  +A  RVF TRHYN+LL AL K+NR+ +AE LF +F  +GL  DVAS+SIMI
Sbjct:  188 SISGSVGKLTPQDQVDVVRQLENCIRRRKLDKARDILLGHATTRVFGTRHYNALLAALAKSNRVDEAERLFCQFANSGLAHDVASHSIMI 277
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BLAST of Gvermi12795.t1 vs. uniprot
Match: A0A1X6NU58_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NU58_PORUM)

HSP 1 Score: 70.1 bits (170), Expect = 7.650e-9
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 0 
Query:   78 LVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRN-GLVRDVASYSIMICAYG 155
            L+R+LE CLR+RK+DRA  I+ E     +   RH N++LDAL K+ R+ +A+ LF +FD    L RDVA++SIM+  YG
Sbjct:  373 LLRRLETCLRKRKLDRALAIVREGVTAHLLGVRHANAVLDALGKSGRVAEAQKLFEQFDHPLALRRDVATHSIMVSTYG 451
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BLAST of Gvermi12795.t1 vs. uniprot
Match: A0A5J4YX80_PORPP (Pentatricopeptide repeat-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX80_PORPP)

HSP 1 Score: 63.5 bits (153), Expect = 9.940e-7
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:   76 KRLVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMICAY 154
            +RL  +LE+ LR R++  A  +L E    RVF TRHYN++LDAL K  ++ +AE LF+         DVASYSIMI  Y
Sbjct:  253 RRLAARLESALRERRVADACALLHEYGSMRVFSTRHYNAVLDALCKGQKVAEAERLFSSLSSP----DVASYSIMISMY 327
The following BLAST results are available for this feature:
BLAST of Gvermi12795.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IES9_9FLOR5.460e-3953.54Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7QMM7_CHOCR2.130e-1858.89PPR_long domain-containing protein n=1 Tax=Chondru... [more]
A0A1X6NU58_PORUM7.650e-948.10Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A5J4YX80_PORPP9.940e-746.84Pentatricopeptide repeat-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 471..645
e-value: 2.5E-39
score: 137.5
coord: 75..247
e-value: 4.7E-42
score: 146.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 365..470
e-value: 3.5E-34
score: 119.8
coord: 258..364
e-value: 1.6E-34
score: 120.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 312..532
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 144..353
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 276..330
e-value: 1.2E-13
score: 50.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 461..495
e-value: 4.5E-5
score: 21.4
coord: 426..460
e-value: 2.0E-8
score: 31.9
coord: 285..319
e-value: 2.8E-7
score: 28.3
coord: 566..595
e-value: 0.0022
score: 16.0
coord: 531..564
e-value: 7.1E-4
score: 17.6
coord: 146..179
e-value: 9.9E-8
score: 29.7
coord: 355..382
e-value: 4.9E-5
score: 21.2
coord: 215..249
e-value: 8.2E-7
score: 26.8
coord: 321..353
e-value: 9.8E-8
score: 29.7
coord: 112..144
e-value: 6.9E-6
score: 23.9
coord: 391..423
e-value: 1.8E-10
score: 38.3
coord: 180..214
e-value: 5.1E-7
score: 27.5
coord: 250..283
e-value: 1.4E-8
score: 32.3
coord: 496..529
e-value: 5.0E-10
score: 36.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 531..577
e-value: 1.3E-8
score: 34.9
coord: 143..189
e-value: 2.5E-10
score: 40.4
coord: 212..261
e-value: 6.9E-16
score: 58.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 111..140
e-value: 5.4E-4
score: 20.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 12.41921
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 11.202506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 12.232868
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 9.174665
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..598
score: 10.402331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 11.005202
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 11.651919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..563
score: 8.681407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 283..317
score: 10.435215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 12.298636
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 13.822257
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..177
score: 11.355965
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 389..423
score: 13.920909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..383
score: 9.141782
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 358..520
e-value: 7.9E-18
score: 64.5
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 246..423
coord: 387..624
coord: 82..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1537547..1539814 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1Gvermi12795.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1537547..1539814 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=657bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRLVRQLENCLRRRKIDRARDILFE
NAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIM
ICAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEA
ALRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVI
TYGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQP
HRAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGL
RPDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDAC
GKSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQ
MRSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNT
LIDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLAL
QLYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWE
NVGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSG
GVPVLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long