Gvermi12790.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12790.t1
Unique NameGvermi12790.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length219
Homology
BLAST of Gvermi12790.t1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 405 bits (1041), Expect = 1.720e-142
Identity = 191/218 (87.61%), Postives = 207/218 (94.95%), Query Frame = 0
Query:    1 MFAFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWFGGYYVH 218
            MFAFVSGFAGLPATRAS+F G  F+  H+PVRTAR++M ASKSVPFLP+PAKLDGTLPGDVGFDPLGFS+ FD+NFLREAEVKHGRICMLAIVGWVFPEAVYHLPNE+YSATNPL A+ KVGWLP IQILLFIAACEAAT YKKVYEQKCEDPGN+GFDPLNLAGTPEKKKR+QTAEIKNGRLAM+AIGGAIHHALLTN+GLVEQI+SG+WFGGYYVH
Sbjct:    1 MFAFVSGFAGLPATRASSFNGAQFSQTHSPVRTARFSMAASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACEAATGYKKVYEQKCEDPGNFGFDPLNLAGTPEKKKRRQTAEIKNGRLAMVAIGGAIHHALLTNMGLVEQIQSGRWFGGYYVH 218          
BLAST of Gvermi12790.t1 vs. uniprot
Match: R7QMN6_CHOCR (Light-harvest protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMN6_CHOCR)

HSP 1 Score: 320 bits (819), Expect = 1.070e-108
Identity = 154/218 (70.64%), Postives = 178/218 (81.65%), Query Frame = 0
Query:    1 MFAFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWFGGYYVH 218
            M AFVSGFAG    R++ F+G S +   APV  A  +M  SKS+P++ +PAKLDG+LPGDVGFDPLG SN F+++FLREAEVKHGRICMLAIVGWVFPE VYHLPN  YS TNPLYAVP VG+LP IQILLF+A CEAA +YKKVYEQ CE+PG++G DPL  + TPE+K   Q AEIKNGRLAMIAIGGAIHHALLTNVGL EQI+SG + GGYY+H
Sbjct:    1 MIAFVSGFAGASVARSNAFSGTSVSTRSAPV-VANVSMSMSKSIPYMERPAKLDGSLPGDVGFDPLGISNMFELDFLREAEVKHGRICMLAIVGWVFPEMVYHLPNAAYSVTNPLYAVPSVGFLPCIQILLFMAVCEAA-AYKKVYEQNCENPGDFGIDPLGFSKTPERKAHYQLAEIKNGRLAMIAIGGAIHHALLTNVGLWEQIQSGMYTGGYYIH 216          
BLAST of Gvermi12790.t1 vs. uniprot
Match: Q7XY92_GRIJA (Light-harvest protein (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY92_GRIJA)

HSP 1 Score: 296 bits (758), Expect = 1.460e-99
Identity = 141/202 (69.80%), Postives = 162/202 (80.20%), Query Frame = 0
Query:   17 STFTGKSFAVHHAPVRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWFGGYYVH 218
            + F G + +   AP + AR++M+AS SVPFL +P KLDG+LPGDVGFDP GFSNAF++NFLREAE+KHGRICMLAI+GWVFPE V HLPNE YSATNPLYAV  VGWLP IQIL FIA CEA     KVY++ C +PGNYGFDP  L   P+ K+  + AEIKNGRLAM AIGGAIHHALL NVGLVEQI SG+WFGGYY+H
Sbjct:    7 TAFAGAAVSRAAAPAK-ARFSMDASASVPFLERPPKLDGSLPGDVGFDPCGFSNAFELNFLREAELKHGRICMLAILGWVFPELVGHLPNEAYSATNPLYAVGSVGWLPIIQILAFIAICEAK-GVAKVYDENCANPGNYGFDPFGLTANPKTKQHYELAEIKNGRLAMCAIGGAIHHALLRNVGLVEQITSGKWFGGYYLH 206          
BLAST of Gvermi12790.t1 vs. uniprot
Match: A0A1X6NK41_PORUM (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1X6NK41_PORUM)

HSP 1 Score: 207 bits (528), Expect = 2.530e-64
Identity = 111/208 (53.37%), Postives = 134/208 (64.42%), Query Frame = 0
Query:   13 ATRASTFTGKSFAVHHAPVRTARYTM----EASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWFGGYY 216
            A+  S+F G  F    AP   A        EASKSVPF  +PA LD +  GDVGFDPLGFSNAFD+ +L EAE+KH RI ML  +G +FPE  YHLPN  YS TNPL AVP VG+ P  QILLF+   EA  SY+K+        G++GFDPL LA     +KR   +E+KNGRLAMIA GG IHHAL+T+ G + QI+ G + GG Y
Sbjct:   18 ASATSSFAGARFVRAAAPTAAATIDTTIRAEASKSVPFWERPASLDKSYAGDVGFDPLGFSNAFDLKWLVEAELKHCRIAMLGALGMIFPE-FYHLPNAAYSQTNPLAAVPSVGFAPVAQILLFMVVLEAI-SYQKINYNPSAPAGDFGFDPLGLAKNESARKRFALSEVKNGRLAMIACGGMIHHALITHQGPITQIQQGHFIGGDY 223          
BLAST of Gvermi12790.t1 vs. uniprot
Match: A0A7S2ZNU9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNU9_9RHOD)

HSP 1 Score: 197 bits (500), Expect = 2.650e-60
Identity = 115/210 (54.76%), Postives = 137/210 (65.24%), Query Frame = 0
Query:    3 AFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYA---VPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSG 209
            AFVSG   +  T+ S+F G        P   A  TM+ S SVPFL     LD + P    FDPLGFS+ +D+ FL+EAE+KHGRICMLA++GWVFPE V HLP +++S TNPL A   VPK G L   QILLFI ACEA  S+ K+Y  +  +PG YGFDPLNL    +     + AEIKNGRLAMIAIGG IH ALLT  G+  QIKSG
Sbjct:    2 AFVSG---VTVTK-SSFHGSRVCAR-VPKSAATITMKGSASVPFLDSVKTLDPSAPAFADFDPLGFSSMYDLKFLQEAEIKHGRICMLAVLGWVFPEFV-HLPADVFSNTNPLAAFNQVPKAGLL---QILLFILACEAI-SFDKIYYTENWEPGVYGFDPLNLGKNDKSLAWYKAAEIKNGRLAMIAIGGFIHQALLTKQGVFAQIKSG 201          
BLAST of Gvermi12790.t1 vs. uniprot
Match: Q9FEM0_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FEM0_GALSU)

HSP 1 Score: 194 bits (493), Expect = 3.910e-59
Identity = 97/178 (54.49%), Postives = 128/178 (71.91%), Query Frame = 0
Query:   31 VRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKS 208
            V  +  T   SK++PF PKP +LD ++PG  GFDPLGFS+ FD+ FL+EAE+KH RICMLA +GWVFPE  +HLP+E++S T+PL A+ +V     IQILL + A EA +  K  +  + ++PG++GFDPL L G  + KK  QTAEIKNGRLAMIA+G   H  LLTN G++EQ+KS
Sbjct:   34 VHCSAETQRMSKAIPFFPKPERLDESMPGYAGFDPLGFSDKFDVKFLQEAEIKHCRICMLAALGWVFPE-FWHLPSEVFSNTSPLAALGQVPKFGLIQILLLVVALEAISLDKLEFHPE-KEPGDFGFDPLGL-GKGKSKKWMQTAEIKNGRLAMIAMGAFFHQNLLTNQGVIEQLKS 208          
BLAST of Gvermi12790.t1 vs. uniprot
Match: M2X090_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X090_GALSU)

HSP 1 Score: 191 bits (486), Expect = 4.480e-58
Identity = 96/182 (52.75%), Postives = 130/182 (71.43%), Query Frame = 0
Query:   31 VRTARYTMEASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWF 212
            +R +  T   SK++PF PKPA+LD ++PG  GFDPLGFS+ FD+ FL+EAE+KH RICMLA +GWV PE  +HLP+E++S T+PL A+ +V  L  IQILL + A EA +  K  +  + ++PG++GFDPL L G    KK  QTAE+KNGRLAMIA+G   H  LLTN G+ EQ+++  +F
Sbjct:   34 LRCSIETQRMSKAIPFFPKPARLDESMPGYAGFDPLGFSDKFDVKFLQEAEIKHCRICMLAALGWVVPE-FWHLPSEVFSNTSPLAALGQVPKLGLIQILLLVLALEAISLDKITFHPE-KEPGDFGFDPLGL-GKGNAKKWMQTAELKNGRLAMIAMGAFFHQNLLTNQGIFEQLRTHNFF 212          
BLAST of Gvermi12790.t1 vs. uniprot
Match: P93449_PORPP (Light-harvesting complex I polypeptide n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=P93449_PORPP)

HSP 1 Score: 179 bits (453), Expect = 4.780e-53
Identity = 99/216 (45.83%), Postives = 134/216 (62.04%), Query Frame = 0
Query:    3 AFVSGFAGL-PATRASTFTGKSFAVHHAPVRTARYTM--EASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAV----YHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQW 211
            AFVSG  G  P  + +    KS      PV+  R  M  E SKS+PFL KP  LDG++ GDVGFDPLGFS+ +D+ FLREAE+KHGRICMLA +G+++PE +       P   ++  NPL AV  +     +QI+LF+   EA  S+ KV+  K   PG++ FDPL L     K  + + +E+KNGRLAMIA+GG IH  LLT   ++ Q+K+G +
Sbjct:    4 AFVSGGRGAGPVDKVAAIQSKSVKAA-VPVKAGRIAMMAEMSKSIPFLEKPKNLDGSMAGDVGFDPLGFSDKWDVKFLREAELKHGRICMLAALGFIYPEIMGGKSIPSPEGYFTELNPLKAVKAIPTAGLLQIVLFVMVLEAI-SWNKVFMDKTSAPGDFKFDPLGL-----KSPKMELSEVKNGRLAMIAVGGMIHQVLLTKQPILAQLKNGPY 212          
BLAST of Gvermi12790.t1 vs. uniprot
Match: L1ID46_GUITC (Light-harvesting Chl a protein 3 n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1ID46_GUITC)

HSP 1 Score: 173 bits (439), Expect = 5.500e-51
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = 0
Query:   39 EASKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQIKSGQWF 212
            + S+++PFL KP KLD ++PG  GFDPLGFS+ +D+ +L+EAE+KHGRICMLA+VG   PE +  LP     +TNPL A  ++ +   +QI +FI  CE+ +  K  Y  K   PG+ GFDPL L   P  +K    AE+KNGRLAMI  GG +HHALLT +G  +QI   +++
Sbjct:   40 QMSEAIPFLEKPKKLDSSMPGYAGFDPLGFSDYYDVKWLQEAEIKHGRICMLAVVGMFHPE-IAKLPQFASFSTNPLEAFYQLSFAGWLQIFVFIGICESFSFEKVYYTDKA--PGDLGFDPLRLGSNPASRKYYANAEVKNGRLAMIGFGGMLHHALLTKMGPFQQIAEQKFY 210          
BLAST of Gvermi12790.t1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 172 bits (435), Expect = 2.890e-50
Identity = 92/175 (52.57%), Postives = 116/175 (66.29%), Query Frame = 0
Query:   41 SKSVPFLPKPAKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYS---ATNPLYAVPKVG-WLPAIQILLFIAACEAATSYKKV-----YEQKCEDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNVGLVEQI 206
            S SVPFL +P  LDGT PGDVGFDPL  S+  DI +LRE+E+KHGRICMLA VG++  E V HLP E++S   A + L+ VP  G W    QI LFI   E   +  K+     +      PG++GFDPL L   P+ +KR + AEIKNGRLAM+A+GG IHH LLT+ G+VEQ+
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFV-HLPGEVFSNKVAIDALFQVPSGGLW----QIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGVVEQL 218          
The following BLAST results are available for this feature:
BLAST of Gvermi12790.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEU1_9FLOR1.720e-14287.61Chlorophyll a-b binding protein, chloroplastic n=1... [more]
R7QMN6_CHOCR1.070e-10870.64Light-harvest protein n=1 Tax=Chondrus crispus Tax... [more]
Q7XY92_GRIJA1.460e-9969.80Light-harvest protein (Fragment) n=1 Tax=Griffiths... [more]
A0A1X6NK41_PORUM2.530e-6453.37Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7S2ZNU9_9RHOD2.650e-6054.76Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
Q9FEM0_GALSU3.910e-5954.49Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
M2X090_GALSU4.480e-5852.75Light-harvesting complex protein n=1 Tax=Galdieria... [more]
P93449_PORPP4.780e-5345.83Light-harvesting complex I polypeptide n=2 Tax=Por... [more]
L1ID46_GUITC5.500e-5148.28Light-harvesting Chl a protein 3 n=4 Tax=Geminiger... [more]
M2VTV2_GALSU2.890e-5052.57Light-harvesting complex protein n=1 Tax=Galdieria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 39..211
e-value: 2.7E-47
score: 163.2
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 17..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 36..206
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 50..195
e-value: 1.2E-42
score: 146.2
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 17..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1527022..1527866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1Gvermi12790.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1527022..1527866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=219bp
MFAFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKP
AKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNV
GLVEQIKSGQWFGGYYVH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln