Gvermi12778.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12778.t1
Unique Name	Gvermi12778.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	148

Homology

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A0A2V3IF03_9FLOR (60S ribosomal protein L23a n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF03_9FLOR)

HSP 1 Score: 235 bits (600), Expect = 1.370e-77
Identity = 124/147 (84.35%), Postives = 134/147 (91.16%), Query Frame = 0

Query:    1 MKPAAKEGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            MKP   + PT+        K GVQIVKGKK+RTSVTFRRPDTLKLPRDPKYPR+ALA+KPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAV+KMY+IQAVKVNTLVRPDG+KKAYVRLTKEH+ALDVASKIG+I
Sbjct:    1 MKPTGTDRPTKXXXXXXXXKVGVQIVKGKKIRTSVTFRRPDTLKLPRDPKYPRKALAKKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVAKMYEIQAVKVNTLVRPDGQKKAYVRLTKEHEALDVASKIGII 147

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BLAST of Gvermi12778.t1 vs. uniprot
Match: R7QNJ5_CHOCR (Ribosomal_L23eN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNJ5_CHOCR)

HSP 1 Score: 222 bits (566), Expect = 1.820e-72
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 0

Query:   10 TRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            ++++KAA AAK G++IVKGKK RTSV FRRP+TLKL RDPKYPR+ALA+KPKLDDHQVIKYPLTTESAMKMIED NTIVFIVDVRANKPKIKAA++KMYDIQA KVNTLVRPDG+KKAYVRLT +HDALDVASKIG+I
Sbjct:    6 SKSDKAALAAKTGIKIVKGKKTRTSVHFRRPETLKLDRDPKYPRKALAKKPKLDDHQVIKYPLTTESAMKMIEDDNTIVFIVDVRANKPKIKAAIAKMYDIQAAKVNTLVRPDGQKKAYVRLTNDHDALDVASKIGII 143

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A0A2T7CX21_9POAL (Ribosomal_L23eN domain-containing protein n=3 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7CX21_9POAL)

HSP 1 Score: 181 bits (459), Expect = 1.750e-55
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 0

Query:    3 PAAKEGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            PA K+  T+A K A+A K+G    K KK+RTSVTF RP TLK  RDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   49 PAKKDAKTQALKVAKAVKSGAVKKKTKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 193

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BLAST of Gvermi12778.t1 vs. uniprot
Match: K3YWE7_SETIT (Ribosomal_L23eN domain-containing protein n=9 Tax=Paniceae TaxID=147428 RepID=K3YWE7_SETIT)

HSP 1 Score: 179 bits (453), Expect = 3.780e-55
Identity = 97/144 (67.36%), Postives = 119/144 (82.64%), Query Frame = 0

Query:    6 KEGPTRAE--KAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            K+  T+A+  K A+A K+G    K KK+RTSVTF RP TLK PRDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:    8 KKADTKAQALKVAKAVKSGTTKRKAKKIRTSVTFHRPRTLKKPRDPKYPRISAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A0A5J9TVH9_9POAL (Ribosomal_L23eN domain-containing protein n=15 Tax=Poaceae TaxID=4479 RepID=A0A5J9TVH9_9POAL)

HSP 1 Score: 177 bits (448), Expect = 1.310e-54
Identity = 94/134 (70.15%), Postives = 113/134 (84.33%), Query Frame = 0

Query:   14 KAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            K A+A K+G    K KK+RTSVTF RP TLK PRDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:    2 KVAKAVKSGQVKKKTKKIRTSVTFHRPKTLKKPRDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 135

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BLAST of Gvermi12778.t1 vs. uniprot
Match: K3YAJ8_SETIT (Ribosomal_L23eN domain-containing protein n=16 Tax=Poaceae TaxID=4479 RepID=K3YAJ8_SETIT)

HSP 1 Score: 177 bits (448), Expect = 2.250e-54
Identity = 97/145 (66.90%), Postives = 119/145 (82.07%), Query Frame = 0

Query:    5 AKEGPTRAE--KAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            AK+G  +A+  K A+A K+G    K KK+RTSVTF RP TLK  RDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:    8 AKKGDAKAQALKVAKAVKSGTVKKKTKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A0A0D6R0M1_ARACU (Ribosomal_L23eN domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R0M1_ARACU)

HSP 1 Score: 176 bits (447), Expect = 3.400e-54
Identity = 97/138 (70.29%), Postives = 115/138 (83.33%), Query Frame = 0

Query:   12 AEKAARAAKAGVQIVKGK--KVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            A+KAA+A KAG   +K K  K+RTSVTF RP TLK PR+PKYPR +  R+ KLD ++V+KYPLTTESAMK IED+NT+VFIVDVRA+K KIK AV KMYDIQ  KVNTL+RPDG KKAYVRLT ++DALDVA+KIG+I
Sbjct:   17 AQKAAKAVKAGAVTLKKKTKKIRTSVTFHRPKTLKTPRNPKYPRLSAPRRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKDAVRKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII 154

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A2XV80_ORYSI (Ribosomal_L23eN domain-containing protein n=9 Tax=Poaceae TaxID=4479 RepID=A2XV80_ORYSI)

HSP 1 Score: 176 bits (447), Expect = 4.390e-54
Identity = 97/145 (66.90%), Postives = 119/145 (82.07%), Query Frame = 0

Query:    5 AKEGPTRAE--KAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            AK+G  +A+  KAA+A K+G      KK+RTSVTF RP TLK  RDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   18 AKKGDAKAQALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 162

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A0A0E0H2S7_ORYNI (Ribosomal_L23eN domain-containing protein n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0H2S7_ORYNI)

HSP 1 Score: 176 bits (447), Expect = 5.140e-54
Identity = 97/145 (66.90%), Postives = 119/145 (82.07%), Query Frame = 0

Query:    5 AKEGPTRAE--KAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            AK+G  +A+  KAA+A K+G      KK+RTSVTF RP TLK  RDPKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   23 AKKGDAKAQALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 167

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BLAST of Gvermi12778.t1 vs. uniprot
Match: A9P8I1_POPTR (50S ribosomal protein L23, chloroplastic n=17 Tax=rosids TaxID=71275 RepID=A9P8I1_POPTR)

HSP 1 Score: 176 bits (445), Expect = 6.640e-54
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 0

Query:    7 EGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPKYPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            +   +A+KAARA K+G    K KK+RT VTF RP TLK  R+PKYPR +   + KLD +Q++KYPLTTESAMK IED+NT+VFIVD+RA+K KIKAAV KMYDIQ  KVNTL+RPDG KKAYVRLT ++DALDVA+KIG+I
Sbjct:   13 DAKAQAQKAARAVKSGPTFKKTKKIRTKVTFHRPRTLKKERNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

The following BLAST results are available for this feature:

BLAST of Gvermi12778.t1 vs. uniprot

BLAST of Gvermi12778.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IF03_9FLOR	1.370e-77	84.35	60S ribosomal protein L23a n=1 Tax=Gracilariopsis ...	[more]
R7QNJ5_CHOCR	1.820e-72	84.06	Ribosomal_L23eN domain-containing protein n=1 Tax=...	[more]
A0A2T7CX21_9POAL	1.750e-55	67.59	Ribosomal_L23eN domain-containing protein n=3 Tax=...	[more]
K3YWE7_SETIT	3.780e-55	67.36	Ribosomal_L23eN domain-containing protein n=9 Tax=...	[more]
A0A5J9TVH9_9POAL	1.310e-54	70.15	Ribosomal_L23eN domain-containing protein n=15 Tax...	[more]
K3YAJ8_SETIT	2.250e-54	66.90	Ribosomal_L23eN domain-containing protein n=16 Tax...	[more]
A0A0D6R0M1_ARACU	3.400e-54	70.29	Ribosomal_L23eN domain-containing protein n=2 Tax=...	[more]
A2XV80_ORYSI	4.390e-54	66.90	Ribosomal_L23eN domain-containing protein n=9 Tax=...	[more]
A0A0E0H2S7_ORYNI	5.140e-54	66.90	Ribosomal_L23eN domain-containing protein n=1 Tax=...	[more]
A9P8I1_POPTR	6.640e-54	66.67	50S ribosomal protein L23, chloroplastic n=17 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 10..55 e-value: 3.6E-16 score: 59.1
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 66..130 e-value: 3.4E-15 score: 56.2
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 6..147
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 67..147 score: 22.726311
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 71..147 e-value: 8.7E-29 score: 97.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..147 e-value: 9.8E-48 score: 163.2
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 125..140
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 66..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1501201..1501891 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12778.t1	Gvermi12778.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1501201..1501891 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MKPAAKEGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPK
YPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKI
KAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005633	Ribosomal_L23/L25_N
IPR013025	Ribosomal_L25/23
IPR019985	Ribosomal_L23
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR001014	Ribosomal_L23/L25_CS
IPR012678	Ribosomal_L23/L15e_core_dom_sf