Gvermi12774.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12774.t1
Unique NameGvermi12774.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length273
Homology
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BLAST of Gvermi12774.t1 vs. uniprot
Match: A0A2V3ILH2_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILH2_9FLOR)

HSP 1 Score: 58.5 bits (140), Expect = 2.000e-6
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:    4 STLYKPESGDYPFLCHHEECQRPFFRKTSLTNHLKAHLNVKSRSIKRYRLAR 55
            +T  +  +G   F CH+E+C R F RKTSLTNHLKAH N+ SRSI R + AR
Sbjct:   15 TTATEAHTGGPTFQCHYEDCMRIFRRKTSLTNHLKAHKNINSRSINRSKRAR 66
The following BLAST results are available for this feature:
BLAST of Gvermi12774.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILH2_9FLOR2.000e-655.77C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 2..51
e-value: 6.3E-6
score: 27.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..272
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 18..40
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 16..45
score: 11.239817
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 10..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1478818..1479636 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12774.t1Gvermi12774.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1478818..1479636 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12774.t1 ID=Gvermi12774.t1|Name=Gvermi12774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=273bp
MSGSTLYKPESGDYPFLCHHEECQRPFFRKTSLTNHLKAHLNVKSRSIKR
YRLARERRLRQIAAAAVMESKADEATDNKKPTNKTFNGAVVEPRDDSHPA
RDMKPAGAITAVPGPINPVVTKTQAQDLLVMTIVEELQKNAEDSEPGKSS
SVSGLEMNENQKMDVSAGNPILDFIDPLELFSSPINQEPLATPPIMDEDL
AILPFDEDPSIAPESEVDILLGLYPGPSFMNLEITVPGVNVGSKTPGDEA
GSPPQHESGPKDFTSVPSGNDQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf