Gvermi12759.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12759.t1
Unique NameGvermi12759.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Homology
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A2V3IFS2_9FLOR (U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFS2_9FLOR)

HSP 1 Score: 372 bits (954), Expect = 2.410e-122
Identity = 192/342 (56.14%), Postives = 236/342 (69.01%), Query Frame = 0
Query:   24 WSPETDVSFPTGDNTIAPGFSPLLCASHSPDYVLWEQNSVISPAVRTLLTNVSNERIEDELEQAKRQKKVLQYLSVSKENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCR-NGSFRQKREG-KLFGWDGGIDNSEAYDESLPLPTSEAVPVLPAFLASPDGFGDAIIKQTQVPIPSPSAT---EPGTDGNDKSRTPNAFVPDQVASFTGVTQVQQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            WSP++D +FPT DN++ PGFSPL+CA H+ ++ LW +   ISPAVRTLL NV+NE IE  L +A    +VLQY  V  EN TA +   + +SV A+ NFT ISCIAK+IPSPDWF+GL ++  C+ NGSF    +G  LFGWDGGID +E Y ++ PL  SEA+ V PA L +P+G+G A I  T++P PSPS      P      K   P+ F+P Q          +   VCIDA AL HFP N+LLYA H++ARVLCD YASCAT GHMV + G PMMM SYC LT CTQ+L YVNSPRYS ALRIPS SP LQFTALAAR+AT IEE +MS A+R+GL
Sbjct:  195 WSPDSDAAFPTTDNSLIPGFSPLVCAVHNSNFTLWAKEERISPAVRTLLVNVTNELIEKRLNRAIEDHQVLQYQIVGTENATATAVTSVALSVTAAGNFTLISCIAKIIPSPDWFVGLTNVQTCQQNGSFIDVPQGGTLFGWDGGIDTAETYTDTSPLLESEAIVVKPAILEAPEGYGTASISPTEIPTPSPSPPXXDSPXXXXXSKDLPPSPFIPTQTPI------PKPNAVCIDANALAHFPRNSLLYANHQMARVLCDTYASCATHGHMVYYLGKPMMMSSYCRLTQCTQQLMYVNSPRYSRALRIPSNSPQLQFTALAARYATDIEENLMSLAIRLGL 530          
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A2V3IQ05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ05_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 1.740e-35
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 0
Query:  247 QQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            Q   VCI A +L H     L+YA HR+ARVLCD   SCATPGH+V F GVPMMM SYC   SC  K+ +VNSPRY+ A+R+PS +  LQFTA AAR+ T  EE++++TA+R+GL
Sbjct:  140 QTSDVCIAARSLAHLSQRDLVYARHRVARVLCDSSGSCATPGHIVLFHGVPMMMTSYCEAVSCVAKIMHVNSPRYTRAVRVPSLTDGLQFTAFAARYQTTTEEHLLATAIRLGL 253          
BLAST of Gvermi12759.t1 vs. uniprot
Match: R7QLS2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLS2_CHOCR)

HSP 1 Score: 126 bits (316), Expect = 5.350e-31
Identity = 66/167 (39.52%), Postives = 100/167 (59.88%), Query Frame = 0
Query:  202 IIKQTQVPIPSPSATEPGTDGNDK-SRTPNAFVPDQVASFT-------GVTQVQQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            ++    +P P P ++E   DG+D  S +P   +P+ ++S +                VCIDA AL H     L+++ H L  VLCD Y SCAT GH+V +RG  MMM++YC L  C+++   VNSPRY   LR+PS++  L+FT+LAAR++T +EE +++  + IGL
Sbjct:   47 VVIDVGIPSPPPGSSE--LDGSDTLSTSPEPSLPEVISSESTSXXXXXXXXXXXXXVVCIDAAALDHVARQDLVFSNHVLKAVLCDMYGSCATDGHIVEYRGHAMMMRTYCDLVGCSKREVEVNSPRYRRRLRVPSRTEGLEFTSLAARYSTRVEERMLAIVVHIGL 211          
BLAST of Gvermi12759.t1 vs. uniprot
Match: R7Q4J5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4J5_CHOCR)

HSP 1 Score: 124 bits (311), Expect = 5.680e-31
Identity = 54/115 (46.96%), Postives = 82/115 (71.30%), Query Frame = 0
Query:  246 VQQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            V ++ VCIDA AL+H   + L+Y+ H  +RVLCD + SCAT GH+V + G  MMMK+YC +  C +++  VNSPRYS  +R+PSK+  L++T+ AAR+ + +EE  ++ A+R+GL
Sbjct:   39 VVKDAVCIDAAALQHLQTHELVYSRHVSSRVLCDAFGSCATQGHIVRYAGKAMMMKNYCRIVECEERIIKVNSPRYSIGMRVPSKTDGLEYTSFAARYESVVEEAAIAAAVRMGL 153          
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A2V3J1H7_9FLOR (Early nodulin-12A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H7_9FLOR)

HSP 1 Score: 123 bits (308), Expect = 2.000e-27
Identity = 77/209 (36.84%), Postives = 101/209 (48.33%), Query Frame = 0
Query:  164 DGGIDNSEAYDES---LPLPTSEAVPVLPAFLASPDGF--------GDAIIKQTQVPIPSPSATEPG-TDGNDKSRTPNAFVPDQVASFTGVTQVQQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            DG     E  D     +P+P  E     P      D          GD I     V  PSP    P   +G D    P              T   ++ +CI    L H     L+Y+ HR+ARVLCD  +SCATPGH+V ++G  MMM+ YC +T C QK+  VNSPRYS A R+ S +  L FTA AAR+ +A EE+++   +RIGL
Sbjct:  357 DGEPTEEETVDREPPVIPVPEGEGESSSPTDEEDTDDLMSETEEADGDLIPDPDVVITPSPEGEIPSIAEGVDGEGEP--------------TPSPEDEICIGVHHLSHMAYKDLIYSSHRVARVLCDKSSSCATPGHIVLYKGEAMMMRKYCTITRCVQKIMRVNSPRYSRAARVDSHTEDLSFTAFAARYESAAEEHLLRAFVRIGL 551          
BLAST of Gvermi12759.t1 vs. uniprot
Match: R7Q6G8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6G8_CHOCR)

HSP 1 Score: 108 bits (271), Expect = 4.510e-25
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 0
Query:  249 ETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            E +C+DA AL +     ++Y +H  A+VLCD   SCAT  HMV +RGV MMM+SYC    C +   +VNSPRY   +RI S++  LQFTA AAR+ T  EE  +  A+R+GL
Sbjct:   49 EPLCVDAEALTNADVQ-MVYRKHFYAKVLCDSERSCATAAHMVVWRGVAMMMRSYCQRVQCEETALHVNSPRYKKKVRIQSRTEGLQFTAFAARYGTKAEELAIGVAVRLGL 159          
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A2V3ISB7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISB7_9FLOR)

HSP 1 Score: 110 bits (275), Expect = 1.970e-24
Identity = 60/145 (41.38%), Postives = 80/145 (55.17%), Query Frame = 0
Query:  217 EPGTDGNDKSRTPNAFVPDQVASFTGVTQ-VQQETVCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMMKSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEYIMSTALRIGL 360
            EP  + +D S  P    P+      GV++   +   C+    L+    N LL+A HR  +VLCD   SCAT GH+V +RG+PM MKSYC    C+  +  VNSPRY   LR+ S S  LQ T  AARF T +EE  +   +R+GL
Sbjct:  133 EPAFEDSDDSLVPIELPPEPTI---GVSEGAVRADACVAVKHLQELERNELLFATHRTTKVLCDGKLSCATAGHIVVYRGLPMSMKSYCQHVGCSMNMMEVNSPRYVWGLRMKSHSVELQLTVFAARFETMVEEAFLVCLVRLGL 274          
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A6P8QUZ2_GEOSA (spondin-2-like n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QUZ2_GEOSA)

HSP 1 Score: 92.4 bits (228), Expect = 4.260e-17
Identity = 57/173 (32.95%), Postives = 92/173 (53.18%), Query Frame = 0
Query:    5 TLSHPC--EGIQSYLVTFEYNWSPETDVSFPTGDNTIAPG--FSPLLCASHSPDYVLWEQNSVISPAVRTLLTNVSNERIEDELEQAKRQKKVLQYLSVSKENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRNGSFRQKREGKLFGWDGGIDNSEAY 173
            TL   C  +G  +Y VTF   W+P   VSFP    T  P   +S L    H+ D+ LW + S++SP V+  + +  ++ +  E+E   R K  +Q    +    T +    +VI+++ S  +  IS + K+IPSPDWF+G+ ++D+C NG ++      LF WD G D+  A+
Sbjct:   24 TLDSSCGADGSANYSVTFSAQWTP---VSFPKQYPTYRPHAQWSQLFGCIHNSDFELWAEGSLVSPGVQVFVEHGKSQLLIHEIE---RLKDKVQTWFQADPILTGEGNTSIVITLEKS--YPLISVLVKIIPSPDWFVGVNALDLCENGKWKNNVLYNLFPWDAGTDSGFAF 188          
BLAST of Gvermi12759.t1 vs. uniprot
Match: R7QQA1_CHOCR (Spondin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQA1_CHOCR)

HSP 1 Score: 91.7 bits (226), Expect = 8.360e-17
Identity = 54/171 (31.58%), Postives = 89/171 (52.05%), Query Frame = 0
Query:   10 CEGIQSYLVTFEYNWSPETDVSFPTGDNTIAPGFSPLLCASHSPDYVLWEQNSVISPAVRTLLT---NVSNERIEDELEQAKRQKKVLQYLSVSKENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRN----GSFRQKREGKLFGWDGGIDNSEAY 173
            C+G  +Y V+F Y W+ + D   P  +     GF  + CASH+  YV+W+     SPA++  +    + S+E++ +E+E  K    +L Y +  ++    D +  L++ + A  +F+ ISCIA+++PSP WF+G+ S DMC        F +     L GW  G  N   Y
Sbjct:   37 CKGTINYTVSFTYEWTLQNDPGQPPEEPV---GFGRMHCASHNDKYVMWKPQRTASPAIQKFVDQDDDNSDEKLRNEIEPDK--DNILSYNASIRDMVVNDESEDLILKISA--DFSLISCIAQLVPSPGWFVGIHSRDMCNETDEASEFVRIDSRALVGWISGRYNDTEY 200          
BLAST of Gvermi12759.t1 vs. uniprot
Match: A0A2B4RW61_STYPI (Spondin-2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RW61_STYPI)

HSP 1 Score: 81.3 bits (199), Expect = 7.120e-14
Identity = 54/186 (29.03%), Postives = 91/186 (48.92%), Query Frame = 0
Query:   10 CEGIQSYLVTFEYNWSPETDVSFPTGDNTIAPG---FSPLLCASHSPDYVLWEQNSVISPAVRTLL----TNVSNERIEDELEQAKRQKKVLQYLSVSKENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRNGSFRQKREGKLFG-WDGGIDNSEAYDESLPLPTSEAVPV 187
            C G  +Y ++++ +W   T  + P   NT  P    FSPL+  SHS DY++W +    S  V+ +     T      IE ++   K  + +L    +       +      I V+ + NF+R+S I+ + PSPDWF+G+ S D+C NG +R+     +   +D G D+ + +  +  LPT  AV +
Sbjct:   24 CPGTATYTLSWKADW---TQANHP---NTALPSNAHFSPLIGCSHSTDYIMWRRGQKASAGVKLVAERGQTGTLRSEIESQISDGKAWQLILPRSGLGAVGELNN------IQVNVTSNFSRVSLISMLAPSPDWFVGIDSHDLCDNGQWRETWNVTMLPPYDSGTDSGQQFINNN-LPTQPAVDI 196          
The following BLAST results are available for this feature:
BLAST of Gvermi12759.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFS2_9FLOR2.410e-12256.14U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=... [more]
A0A2V3IQ05_9FLOR1.740e-3557.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLS2_CHOCR5.350e-3139.52Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4J5_CHOCR5.680e-3146.96Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J1H7_9FLOR2.000e-2736.84Early nodulin-12A n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q6G8_CHOCR4.510e-2548.21Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3ISB7_9FLOR1.970e-2441.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6P8QUZ2_GEOSA4.260e-1732.95spondin-2-like n=1 Tax=Geotrypetes seraphini TaxID... [more]
R7QQA1_CHOCR8.360e-1731.58Spondin domain-containing protein n=1 Tax=Chondrus... [more]
A0A2B4RW61_STYPI7.120e-1429.03Spondin-2 n=2 Tax=Stylophora pistillata TaxID=5042... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..231
NoneNo IPR availablePANTHERPTHR11311SPONDINcoord: 15..176
NoneNo IPR availablePANTHERPTHR11311:SF16SPONDIN-1coord: 15..176
IPR038678Spondin, N-terminal domain superfamilyGENE3D2.60.40.2130coord: 5..187
e-value: 2.4E-31
score: 111.0
IPR009465Spondin, N-terminalPFAMPF06468Spond_Ncoord: 15..175
e-value: 6.2E-29
score: 101.5
IPR009465Spondin, N-terminalPROSITEPS51020SPONDINcoord: 4..198
score: 22.683319

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1397305..1398387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12759.t1Gvermi12759.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1397305..1398387 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12759.t1 ID=Gvermi12759.t1|Name=Gvermi12759.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
LLQCTLSHPCEGIQSYLVTFEYNWSPETDVSFPTGDNTIAPGFSPLLCAS
HSPDYVLWEQNSVISPAVRTLLTNVSNERIEDELEQAKRQKKVLQYLSVS
KENTTADSAAFLVISVDASCNFTRISCIAKVIPSPDWFIGLPSIDMCRNG
SFRQKREGKLFGWDGGIDNSEAYDESLPLPTSEAVPVLPAFLASPDGFGD
AIIKQTQVPIPSPSATEPGTDGNDKSRTPNAFVPDQVASFTGVTQVQQET
VCIDATALRHFPANALLYAEHRLARVLCDPYASCATPGHMVSFRGVPMMM
KSYCHLTSCTQKLTYVNSPRYSPALRIPSKSPHLQFTALAARFATAIEEY
IMSTALRIGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038678Spondin_N_sf
IPR009465Spondin_N