Gvermi12746.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12746.t1
Unique NameGvermi12746.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length576
Homology
BLAST of Gvermi12746.t1 vs. uniprot
Match: A0A2V3IFU4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFU4_9FLOR)

HSP 1 Score: 607 bits (1564), Expect = 6.740e-211
Identity = 311/578 (53.81%), Postives = 400/578 (69.20%), Query Frame = 0
Query:    1 MTCRLIRRWAFLFVWAMLFGFIQGSENKE-PSLSLKTLAQVKKAIEHLSLKDKNRFVNNNVSVWNLHFLKHIADMKDLSEKTIQDELSPSPEADVDNPTNTSKRAAEQIDTEVKGDKPKGKENTSIARMVREMIKAVGEASQKRATQSFIRIGKADIPREKVTAVGDVDGNGFEDYIVSNPGSMNDTGTIRLYLMTDDHRFLYTRDLVPGKYGFTGPPLTPGDRFGAKVEKISSDTPNFSFVTITAPGDRSVAGKKGAFYILQLSDKGNVINSAKFSAKTIEKVVANPAAKNRIQDAQ--ELNRSILSQKIVEILSNKTSMLLVRKEGEVKGAYVITSPEDHKLLHEIEGKMTPRKRLASLRLDSPLVRTDVSSGCFFNETHCACASKAVAVGSAQCTRVVGTEQSSGRTLCQTRDCMASHSCVCDGSELCVRTERTLTSYVPDGAAAGGNVYCTAVQKTITENVLIPDAQVPVILSVNDLPPYNATHCRCAGKQAVTGGATCLDVLRQLSGDNYVCSERACRIGAGEYICDAFGDSYCSRSFVDKVHYVKDGEKSDEAGAVFCHREAYQAESVVKIL 575
            M   L +R AF+   A LFG +  +E+ E  +L  KTLA ++KA+E+LS K+KN  V  N + WNLHFLK + D    ++K    E   SPE  ++  T            E+  +   GK  + +               +  + + F+ IG++ IP  KV AVGDVDGNG ED+IV NP S  + GTIRLYLM  D++FLYTRDLVPGKYGF    L PGDRFGA V KIS+D+PNFSF+ +TAPGDR V GKKGAFY+LQLSDKGNV+N+ K SA TIEK+ +  ++   +      EL  S LS++IV+ILSNKTSMLLVRKEG++KGAYVI+S +D  LL  +E +MTPR +L ++RL SP VR  +SS CFFN+THCAC SK+  VGS  CT+VVGT+QS+GRTLCQ RDC AS  C CDG+ LC R ERT+TSY+ +G A GG +YC+  Q+TITENV+IP A VPV++ +NDLPP+NATHCRC  KQA+ G +TCLD LR  S    VCS R CRIG+ E++CDAFGDSYC R+F DK+HYV +G++ +E G V+CHRE+YQ+E +VK+L
Sbjct:    1 MVRTLFQRKAFIVFVASLFGVLHATESTERATLGSKTLAHMRKAVEYLSAKEKND-VKTNSAPWNLHFLKVMVDKAGNADKVNATEHFQSPEPVIEESTTD----------ELNQNMTTGKSQSPV---------------KPGSEEDFVMIGESKIPANKVAAVGDVDGNGVEDFIVRNPASNYNRGTIRLYLMAKDNKFLYTRDLVPGKYGFNSDSLKPGDRFGASVLKISNDSPNFSFIAVTAPGDRMVPGKKGAFYVLQLSDKGNVLNNVKLSASTIEKIASQQSSGREVDSVTIPELKESSLSKRIVDILSNKTSMLLVRKEGQIKGAYVISSNDDQMLLKHLEKQMTPRNKLETMRLLSPAVRPALSSSCFFNDTHCACGSKSPTVGSNDCTQVVGTDQSTGRTLCQKRDCQASFQCSCDGTSLCQRAERTMTSYITEGPAPGGMMYCSPQQRTITENVVIPGASVPVVVDINDLPPFNATHCRCTPKQAIVGSSTCLDFLRTESSIAIVCSVRECRIGSSEHVCDAFGDSYCERTFADKIHYVNNGDRLNEPGTVYCHRESYQSEVLVKVL 552          
BLAST of Gvermi12746.t1 vs. uniprot
Match: R7Q231_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q231_CHOCR)

HSP 1 Score: 266 bits (681), Expect = 2.620e-79
Identity = 151/439 (34.40%), Postives = 233/439 (53.08%), Query Frame = 0
Query:  145 TQSFIRIGKADIPREKVTAVGDVDGNGFEDYIVSNPGSMNDTGTIRLYLMTDDHRFLYTRDLVPGKYGFTGPPLTPGDRFGAKVEKISSDTP-NFSFVTITAPGDRSVAGKKGAFYILQLSDKGNVINSAKFSAKTIEKVVANPAAKNRIQDAQELNRSILSQKIVEILSNKTSML----LVRKEGEVKGAYVITSPEDHKLLHEIEGKMTPRKRLASLRLDSPLVRTDVSSGCFFNETHCACASKAVAVGSAQCTRVVGTEQSSGRTLCQTRDCMASHSCVCDGSELCVRTERTLTSYVPDGAAAGGNVYCTAVQKTITENVLI-------PDAQVPVILSVNDLPPYNATHCRCAGKQAVTGGATCLDVLRQLSGDNYVCSERACRIGAGEYICDAFGDSYCSRSFVDKVHYVKDGEKSDEAGAVFCHREAYQAESV 571
            T  F+      +P E +T +GD+D NG  DY+VSNP + N TG+++L+L+T++H  L+TR ++P       P L P D F A V  +S +   + S + + APGD   A   GA Y+L L+  GN+++S K SA  ++    + A +NR+     ++        V+++    S L     ++  G+++   V    E    L     + + R   A   +    VR   S  C F++++CAC   A   GS  C  VVGTE  +GR LC+ RDC A++ C CDG+E C R E T T++V +G A GG +YCT+V  T+ +N+++       PD +  ++    D  PY AT+CRC+ + AV   +TCLD LR+      +CS RAC+    EY+CD FG +YC R  V    YV +G+ +++ G   C  E+   E V
Sbjct:   34 TAQFLHGAPNKVPFEYLTDIGDIDNNGHPDYLVSNPSANNHTGSLQLHLITNNHTSLFTRQIIPSTPNSDTPALKPHDNFAASVANLSQNKDRSLSRILVGAPGD---ANGTGAVYVLTLTRTGNLVHSTKLSASNLQSAANDHAPRNRLGATLSVSHDPKEHGSVKVVVGAASGLPLTVFIKPSGDLQQTPVTKRLEQLTRLTRRASRGSNRSDTARFPMRGKTVRQADSGECLFSDSYCACTLAAAEAGSLACMDVVGTEVGTGRKLCEIRDCEATYECRCDGAEHCSREEVTFTTFVSEGVAGGGRMYCTSVSTTVMQNLVLNVVPFPAPDVR-QLVHDGADAQPYTATNCRCSLRSAVQQASTCLDFLREEGDGIRLCSRRACQFKDDEYVCDVFGTTYCGRESVASRWYVSEGDYAED-GVEVCRLESGNKERV 467          
The following BLAST results are available for this feature:
BLAST of Gvermi12746.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFU4_9FLOR6.740e-21153.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q231_CHOCR2.620e-7934.40Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028994Integrin alpha, N-terminalGENE3D2.130.10.130coord: 159..302
e-value: 8.1E-8
score: 33.8
IPR028994Integrin alpha, N-terminalSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 163..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..575
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1364901..1366628 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1Gvermi12746.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1364901..1366628 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=576bp
MTCRLIRRWAFLFVWAMLFGFIQGSENKEPSLSLKTLAQVKKAIEHLSLK
DKNRFVNNNVSVWNLHFLKHIADMKDLSEKTIQDELSPSPEADVDNPTNT
SKRAAEQIDTEVKGDKPKGKENTSIARMVREMIKAVGEASQKRATQSFIR
IGKADIPREKVTAVGDVDGNGFEDYIVSNPGSMNDTGTIRLYLMTDDHRF
LYTRDLVPGKYGFTGPPLTPGDRFGAKVEKISSDTPNFSFVTITAPGDRS
VAGKKGAFYILQLSDKGNVINSAKFSAKTIEKVVANPAAKNRIQDAQELN
RSILSQKIVEILSNKTSMLLVRKEGEVKGAYVITSPEDHKLLHEIEGKMT
PRKRLASLRLDSPLVRTDVSSGCFFNETHCACASKAVAVGSAQCTRVVGT
EQSSGRTLCQTRDCMASHSCVCDGSELCVRTERTLTSYVPDGAAAGGNVY
CTAVQKTITENVLIPDAQVPVILSVNDLPPYNATHCRCAGKQAVTGGATC
LDVLRQLSGDNYVCSERACRIGAGEYICDAFGDSYCSRSFVDKVHYVKDG
EKSDEAGAVFCHREAYQAESVVKIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028994Integrin_alpha_N