Gvermi12737.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12737.t1
Unique NameGvermi12737.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length483
Homology
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BLAST of Gvermi12737.t1 vs. uniprot
Match: UPI001AE79C9E (DNA alkylation repair protein n=1 Tax=Methanohalophilus levihalophilus TaxID=1431282 RepID=UPI001AE79C9E)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-13
Identity = 56/215 (26.05%), Postives = 103/215 (47.91%), Query Frame = 0 
Query:   10 QIVSSLQHILDQRSVRDSQVWSCERMHPVTMTRGVRMFGIRFCVHTWYDQWRQPAPHITRDLKVSVAMQLFRSEYLEDKFSAIIFLSEILIPERVIDTTHMPQFADLIDTACISGYEVCDKFSTLVLKQLLIDRRHEMMPLIAEWMRCECAWRARSAIWALIPLARDAIYENLILEGCSIVLDKTDDCCKLAVASALRALARTSPGSVYDFLHEN 224
            ++V+ LQ  L+  +   ++ W  + +      RGV +  IR  +  WY +  Q   +++ D ++ +A+  F  EY EDK + ++FL ++ + +R       P+F  L +   I  + V D F   VL  ++     E    I+ W      W+AR ++ A   L  +  +  ++LE CSI++ + +   K AV   +R LA++    V  F+ EN
Sbjct:    6 ELVTILQSRLESVAKIKTKDWWEKYLKYTIEFRGVNLAVIRDELKVWYTE--QGIDNLSLDDQLDLALSFFEEEYAEDKLAGVLFL-QLYLYDRFEWKLLFPRFEGLFENNYIFDWNVNDWFCVRVLGPIIEKNGMECAKAISGWHSSGNVWQARCSLVAFANLTGNEEFRTMLLESCSILIQREERFAKKAVGWIMRELAKSDEKVVVGFIQEN 217
The following BLAST results are available for this feature:
BLAST of Gvermi12737.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AE79C9E1.900e-1326.05DNA alkylation repair protein n=1 Tax=Methanohalop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.10.90coord: 6..244
e-value: 8.2E-23
score: 83.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 301..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 437..482
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..482
NoneNo IPR availablePANTHERPTHR34070ARMADILLO-TYPE FOLDcoord: 6..239
NoneNo IPR availableCDDcd06561AlkD_likecoord: 67..226
e-value: 2.3078E-15
score: 72.7302
IPR014825DNA alkylation repair enzymePFAMPF08713DNA_alkylationcoord: 42..232
e-value: 9.6E-17
score: 61.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 57..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1285680..1287128 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1Gvermi12737.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1285680..1287128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=483bp
MQPSASSAAQIVSSLQHILDQRSVRDSQVWSCERMHPVTMTRGVRMFGIR
FCVHTWYDQWRQPAPHITRDLKVSVAMQLFRSEYLEDKFSAIIFLSEILI
PERVIDTTHMPQFADLIDTACISGYEVCDKFSTLVLKQLLIDRRHEMMPL
IAEWMRCECAWRARSAIWALIPLARDAIYENLILEGCSIVLDKTDDCCKL
AVASALRALARTSPGSVYDFLHENHNLCRMSASGLSRACGDQHEWKAYFR
QRRKDLQKSRRGAQRRSPMVRRSESSASAAAVSAASSSEVGRSAVALPPG
ASVVGAPPPDLRTAGASERGWHGTGASTDGMASARTSTAGMYNAATAAGG
QAMSGIGAVDPIARRLPAAGVSTTCVTFDAPQMAVSHSPSAARNEIATES
DIPASAMTMTHVRAPERRVLPSFSELLRGQPPQRRAHSAEGFEHESGGEG
VTGARRYEEDVDSGDVGARLRGGTEDRTRSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014825DNA_alkylation
IPR016024ARM-type_fold