Gvermi12728.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12728.t1
Unique NameGvermi12728.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Homology
BLAST of Gvermi12728.t1 vs. uniprot
Match: A0A2V3IJW7_9FLOR (Copper transport protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJW7_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 2.450e-54
Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 0
Query:   34 HNMGMGHQMSPFLFIRTTGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTSKPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYALALHPRLKSAANKPACDC 167
            HN+G+ HQMSPFLF RTTGFFVLFKEA+IQS+GAF GA +LSF FA+L+T  SQ+IR +EER L+    + K + G+ HA R  LHY AMLIVMTMNVW+ILAVV GHA GW++YA  LHPRL++ + KPACDC
Sbjct:   64 HNVGVAHQMSPFLFTRTTGFFVLFKEADIQSSGAFAGAFLLSFAFALLATTSSQLIRYLEERALTKGGTVSKFLAGLHHAVRLLLHYAAMLIVMTMNVWIILAVVIGHAFGWMLYAFVLHPRLRTPSTKPACDC 197          
BLAST of Gvermi12728.t1 vs. uniprot
Match: A0A7S0ZHJ6_9RHOD (Copper transport protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHJ6_9RHOD)

HSP 1 Score: 95.1 bits (235), Expect = 1.870e-21
Identity = 60/129 (46.51%), Postives = 74/129 (57.36%), Query Frame = 0
Query:   34 HNMGMGH-----------QMSPFLFIRTTGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTSKPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALG---WIVY 148
            H+ GMGH            MSPFLF    G+FVLF+ A I S GAF  AL+LSF F  L+TL +   +  +E  +S       I+T + +  R  LHY AMLIVMTMNVWLI+AV+ GH  G   W VY
Sbjct:   22 HDDGMGHGSMDHINSPHESMSPFLFTSKFGYFVLFQGAFISSNGAFTAALLLSFLFVTLTTLFTSYAKQYQECLVSQISLKRSIITSLLYTVRNALHYTAMLIVMTMNVWLIIAVLCGHFTGSFIWSVY 150          
BLAST of Gvermi12728.t1 vs. uniprot
Match: A0A1X6PHG3_PORUM (Copper transport protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PHG3_PORUM)

HSP 1 Score: 90.9 bits (224), Expect = 1.470e-19
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   42 MSPFLFIRTTGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLST--SKPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYAL 150
            MSPF   R   FF LF  A + S GAF GALI SF FAVLST+  ++++ +E R +++  SK    ++ G   A R  LHY+AML++MT NVW+ L VVAGH +G+ ++ L
Sbjct:   66 MSPFFTARAGEFFWLFSGARVDSDGAFAGALIGSFVFAVLSTIAMELLKRVERRAIASPASKVPQALLGGAAQAVRLSLHYLAMLLIMTFNVWVFLVVVAGHGVGYALFRL 176          
BLAST of Gvermi12728.t1 vs. uniprot
Match: A0A5J4YWM8_PORPP (Copper transport protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWM8_PORPP)

HSP 1 Score: 84.3 bits (207), Expect = 7.480e-17
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 0
Query:   36 MGMGHQ-MSPFLFIRTTGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTSK---PLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYAL-ALHPRLKSAANK 162
            M M H+ MSPFLF  TTGF+++F+EA I S   F GA   S FFA   T  S   R  E R + + +   P  ++V+    A R   HY AML++M+MNV +I++VV GH LGW+ + L A H +L +   K
Sbjct:   28 MSMAHEGMSPFLFTSTTGFYLIFEEAYITSAAGFAGAFFASMFFAWFVTWFSAASRVWERRVVDSRRLRSPGPELVSAALLALRHGGHYFAMLLIMSMNVGIIVSVVLGHGLGWLSWQLLAPHGKLNALLGK 159          
BLAST of Gvermi12728.t1 vs. uniprot
Match: A0A1X6P488_PORUM (Copper transport protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P488_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 1.420e-14
Identity = 48/114 (42.11%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   42 MSPFLFIRTTGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTSK----PLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYALA 151
            MSPF   R   FF LFK A ++S G F GA+I S  FA  +TL  +  + +E + L                  H FR  LHY+AML++MT NVW+ LAVV GH +G+  Y LA
Sbjct:   61 MSPFFTSRAGDFFWLFKGARVESGGEFAGAIIGSIAFAAFATLGVEAAKKMERQMLGRHSGXXXXXXXXXXXXAHGFRLALHYLAMLLIMTFNVWVFLAVVVGHGIGYATYRLA 174          
The following BLAST results are available for this feature:
BLAST of Gvermi12728.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IJW7_9FLOR2.450e-5465.67Copper transport protein n=1 Tax=Gracilariopsis ch... [more]
A0A7S0ZHJ6_9RHOD1.870e-2146.51Copper transport protein (Fragment) n=1 Tax=Timspu... [more]
A0A1X6PHG3_PORUM1.470e-1946.85Copper transport protein n=1 Tax=Porphyra umbilica... [more]
A0A5J4YWM8_PORPP7.480e-1742.42Copper transport protein n=1 Tax=Porphyridium purp... [more]
A0A1X6P488_PORUM1.420e-1442.11Copper transport protein n=1 Tax=Porphyra umbilica... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 101..145
e-value: 8.6E-10
score: 39.4
IPR007274Ctr copper transporterPANTHERPTHR12483SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERScoord: 28..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..32
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 127..131
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..126
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 130..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1228039..1228542 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1Gvermi12728.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1228039..1228542 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MASTSSAGSSADAAMDGNGPTPASTTTSAAAGGHNMGMGHQMSPFLFIRT
TGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTS
KPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYAL
ALHPRLKSAANKPACDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter