Gvermi12720.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12720.t1
Unique NameGvermi12720.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length89
Homology
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A2V3ILI1_9FLOR (Diphthamide biosynthesis protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILI1_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 8.550e-37
Identity = 60/85 (70.59%), Postives = 65/85 (76.47%), Query Frame = 0
Query:    1 MPVYDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGAGGDGGGDERLRVRCAPEE 85
            MPVYDDVDLEDM WD  LLAYVYQCPCGDVFQITPAEL AG+EIARCPSCTLV+RVIYD D+L      D       R+RC  E+
Sbjct:    1 MPVYDDVDLEDMQWDATLLAYVYQCPCGDVFQITPAELAAGDEIARCPSCTLVIRVIYDPDDLPS----DASELSLARIRCVAEQ 81          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A383VPL6_TETOB (DPH-type MB domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VPL6_TETOB)

HSP 1 Score: 102 bits (255), Expect = 6.340e-27
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGAGGDGGG 73
            YD+V++EDM WDE L AY Y CPCGDVFQIT  +L+AGEEIARCPSC+L + VIYD D+  D     G G
Sbjct:    3 YDEVEIEDMKWDEQLQAYTYSCPCGDVFQITLEQLKAGEEIARCPSCSLYITVIYDQDDFLDAEPPSGAG 72          
BLAST of Gvermi12720.t1 vs. uniprot
Match: C1EHZ8_MICCC (DPH-type MB domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHZ8_MICCC)

HSP 1 Score: 102 bits (255), Expect = 6.710e-27
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELND 65
            YD++DLEDM W+  L A+ YQCPCGD+FQITP ELRAGEE+  CPSC+LV+ V+YD DEL +
Sbjct:    5 YDEIDLEDMDWNSELGAFTYQCPCGDLFQITPEELRAGEEVGHCPSCSLVITVVYDPDELKE 66          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A835WQK1_9CHLO (DPH-type MB domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WQK1_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 4.460e-26
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGAGGDGGGDER 76
            YD+V++EDM+W+E L AY Y CPCGD+FQIT  ELRAGEEIARCPSC+L + VIYD ++  +     GG D +
Sbjct:    3 YDEVEIEDMTWNEKLQAYTYPCPCGDLFQITLEELRAGEEIARCPSCSLYITVIYDPEDYENAEPPTGGSDTK 75          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A067LCR6_JATCU (DPH-type MB domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067LCR6_JATCU)

HSP 1 Score: 100 bits (249), Expect = 5.660e-26
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDE-LNDG 66
            YDDV++EDM W+EGL AY Y CPCGD+FQIT  +LR GEEIARCPSC+L + VIY++++ L+DG
Sbjct:    3 YDDVEIEDMEWNEGLQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNIEDFLDDG 66          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A218XGB5_PUNGR (diphthamide biosynthesis protein 3-like n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XGB5_PUNGR)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-25
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGA 67
            YDDV++EDM W+E L AY Y CPCGD+FQIT  ELR GEEIARCPSC+L + VIY+ ++  DG+
Sbjct:    3 YDDVEIEDMEWNEELQAYTYPCPCGDLFQITKDELRLGEEIARCPSCSLYITVIYNAEDFADGS 66          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A2J7ZNU5_9CHLO (Diphthamide biosynthesis protein 3 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNU5_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 1.620e-25
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELND 65
            YD+V++EDM WDE L AY Y CPCGD+FQIT  ELR+GEEIARCPSC+L + V+YD ++ +D
Sbjct:    3 YDEVEIEDMKWDEKLQAYTYTCPCGDLFQITLEELRSGEEIARCPSCSLYITVVYDPEDFSD 64          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A2K3CT09_CHLRE (DPH-type MB domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CT09_CHLRE)

HSP 1 Score: 99.4 bits (246), Expect = 1.810e-25
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGAGGDGGGDERLRVRCAPEEFE 87
            YD+V++EDM+W+E L AY Y CPCGD+FQIT  ELRAGEEIARCPSC+L + VIYD ++  +      G D ++    AP+  E
Sbjct:    3 YDEVEIEDMTWNEKLQAYTYPCPCGDLFQITLEELRAGEEIARCPSCSLYITVIYDPEDYENAEPPTRGTDSKV-PSAAPQPSE 85          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A7S0S3Q5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3Q5_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 3.820e-25
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 MPVYDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDE 62
            M  YD+V++EDM+W+E L AY Y CPCGDVFQIT  ELR GEEIARCPSC+L + VIYD D+
Sbjct:    1 MGAYDEVEIEDMTWNEELQAYTYSCPCGDVFQITLEELRQGEEIARCPSCSLYIMVIYDPDD 62          
BLAST of Gvermi12720.t1 vs. uniprot
Match: A0A835PK01_VANPL (DPH-type MB domain-containing protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PK01_VANPL)

HSP 1 Score: 98.2 bits (243), Expect = 4.150e-25
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    4 YDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSCTLVVRVIYDLDELNDGAGGDGGGDERLRVRCA 82
            YDDV++EDM W E L A+ Y CPCGD+FQIT  ELRAGEEIARCPSC+L + VIY+++E  + +     G  R  +  A
Sbjct:    3 YDDVEIEDMEWSEELQAFTYPCPCGDLFQITKEELRAGEEIARCPSCSLYITVIYNMEEFAEFSSEKPPGGNRQPIVVA 81          
The following BLAST results are available for this feature:
BLAST of Gvermi12720.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILI1_9FLOR8.550e-3770.59Diphthamide biosynthesis protein 3 n=1 Tax=Gracila... [more]
A0A383VPL6_TETOB6.340e-2762.86DPH-type MB domain-containing protein n=1 Tax=Tetr... [more]
C1EHZ8_MICCC6.710e-2766.13DPH-type MB domain-containing protein n=1 Tax=Micr... [more]
A0A835WQK1_9CHLO4.460e-2658.90DPH-type MB domain-containing protein n=1 Tax=Chla... [more]
A0A067LCR6_JATCU5.660e-2665.63DPH-type MB domain-containing protein n=1 Tax=Jatr... [more]
A0A218XGB5_PUNGR1.530e-2564.06diphthamide biosynthesis protein 3-like n=1 Tax=Pu... [more]
A0A2J7ZNU5_9CHLO1.620e-2564.52Diphthamide biosynthesis protein 3 n=1 Tax=Tetraba... [more]
A0A2K3CT09_CHLRE1.810e-2553.57DPH-type MB domain-containing protein n=3 Tax=Chla... [more]
A0A7S0S3Q5_9CHLO3.820e-2567.74Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A835PK01_VANPL4.150e-2554.43DPH-type MB domain-containing protein n=2 Tax=Vani... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007872DPH-type metal-binding domainPFAMPF05207zf-CSLcoord: 5..59
e-value: 1.1E-18
score: 66.6
IPR007872DPH-type metal-binding domainPROSITEPS51074DPH_MBcoord: 3..59
score: 21.097237
IPR036671DPH-type metal-binding domain superfamilyGENE3D3.10.660.10DPH Zinc fingercoord: 1..71
e-value: 2.3E-24
score: 86.7
IPR036671DPH-type metal-binding domain superfamilySUPERFAMILY144217CSL zinc fingercoord: 2..73
IPR044248Diphthamide biosynthesis protein 3/4-likePANTHERPTHR21454DPH3 HOMOLOG-RELATEDcoord: 1..64
NoneNo IPR availablePANTHERPTHR21454:SF2DPH3 HOMOLOGcoord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1203935..1204336 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1Gvermi12720.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1203935..1204336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=89bp
MPVYDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSC
TLVVRVIYDLDELNDGAGGDGGGDERLRVRCAPEEFEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007872DHP_MB_dom
IPR036671DHP_MB_sf
IPR044248DPH3/4-like