Gvermi12705.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12705.t1
Unique NameGvermi12705.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length116
Homology
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A2V3J738_9FLOR (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J738_9FLOR)

HSP 1 Score: 103 bits (257), Expect = 1.570e-26
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 MGSSGQATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPP----APLFFELLYVAARHITFVHIPDDIDVRETMDLY 96
            MGSS + T+L F + ALCGR L FELRN + VEG L+SVD NMNVTI+   +        +      A + FELLYVA+RHITF+ IPDD++V ETMD+Y
Sbjct:    1 MGSSTEQTTLVFFIKALCGRNLRFELRNGVCVEGELESVDQNMNVTIAHALWNCGQLGSLTKDRENVASVCFELLYVASRHITFIQIPDDVNVSETMDIY 100          
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A6M2CNV9_RHIMP (Putative u6 snrna-associated sm-like protein lsm2 ovary overexpressed n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CNV9_RHIMP)

HSP 1 Score: 67.4 bits (163), Expect = 2.920e-12
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    7 ATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKR 99
            A SL  +L +L GR+   ELRN + V GT++SVDA MNV +SD +       V  P     +   +V  R + ++HIPDDID+  ++ L   R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDAT-------VVGPSGEKNYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A6M2CMZ5_RHIMP (Putative u6 snrna-associated sm-like protein lsm2 ovary overexpressed n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CMZ5_RHIMP)

HSP 1 Score: 67.4 bits (163), Expect = 6.220e-12
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    7 ATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKR 99
            A SL  +L +L GR+   ELRN + V GT++SVDA MNV +SD +       V  P     +   +V  R + ++HIPDDID+  ++ L   R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDAT-------VVGPSGEKNYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
BLAST of Gvermi12705.t1 vs. uniprot
Match: L7M216_RHIPC (Sm domain-containing protein n=4 Tax=Rhipicephalus TaxID=426455 RepID=L7M216_RHIPC)

HSP 1 Score: 67.4 bits (163), Expect = 6.360e-12
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0
Query:    7 ATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKR 99
            A SL  +L +L GR+   ELRN + V GT++SVDA MNV +SD +   P+   T       +   +V  R + ++HIPDDID+  ++ L + R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDATVVGPNGEET-------YASFFVQGRQVRYIHIPDDIDMAASLQLQNTR 96          
BLAST of Gvermi12705.t1 vs. uniprot
Match: UPI0018981680 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018981680)

HSP 1 Score: 67.0 bits (162), Expect = 8.770e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 0
Query:    7 ATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRLE 101
            A SL  +L AL GR+   ELRN + V GT+++VDA MNV +SD +   P+   T       +   +V  R + +VHIPDDID+   + L + R +
Sbjct:   11 AKSLVLMLQALRGRQTTIELRNELSVWGTVENVDAFMNVDLSDATVVGPNGEET-------YASFFVQGRQVRYVHIPDDIDMVAALQLQTTRAQ 98          
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A1E1XKJ8_9ACAR (Putative small nuclear ribonucleoprotein smd1 n=2 Tax=Amblyomma TaxID=6942 RepID=A0A1E1XKJ8_9ACAR)

HSP 1 Score: 66.2 bits (160), Expect = 1.820e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0
Query:    9 SLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRLE 101
            SL  +L AL GR+   ELRN + V GT++SVDA MN+ + +V+   P     +      +   +V  R + +VHIPDDID+  T+ L + R+E
Sbjct:   13 SLVLMLQALQGRQTTIELRNELSVWGTIESVDAYMNMDLRNVTVVSPGGKEEA------YTSFFVQGRQVRYVHIPDDIDMVATLKLQATRVE 99          
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A131X8Y5_9ACAR (Putative small nuclear ribonucleoprotein smd1 n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131X8Y5_9ACAR)

HSP 1 Score: 65.9 bits (159), Expect = 2.300e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0
Query:    9 SLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKR 99
            SL  +L +L GR+   ELRN + + GT+++VDA MNV +SD +   P+   T       +   +V  R + +VHIPDDID+  ++ L S R
Sbjct:   13 SLVLMLQSLRGRQTTIELRNELSIYGTVENVDAFMNVDLSDATVVGPNGEET-------YASFFVQGRQVRYVHIPDDIDMVASLQLQSTR 96          
BLAST of Gvermi12705.t1 vs. uniprot
Match: UPI000A2A7FE2 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7FE2)

HSP 1 Score: 65.5 bits (158), Expect = 2.360e-11
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 0
Query:    9 SLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRLEAVKYASS----GGKRR 113
            SL  LL +L G K   ELRN   +EGT+D VD  MN+TISD  +      VT+      +  + +    I +VHIPD+ID+R+ ++     +E  +   S    GGKRR
Sbjct:   13 SLVCLLTSLHGYKTTIELRNEDYIEGTIDHVDGFMNITISDAKF------VTNSGEEFHYSKMVLVGEKIRYVHIPDEIDMRQAIEQKLTSIENSRNRKSERRKGGKRR 115          
BLAST of Gvermi12705.t1 vs. uniprot
Match: A0A803VJW4_FICAL (LSM10, U7 small nuclear RNA associated n=27 Tax=Passeriformes TaxID=9126 RepID=A0A803VJW4_FICAL)

HSP 1 Score: 65.1 bits (157), Expect = 3.490e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    9 SLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRLEAVKYASSGGKRRK 114
            SL  LL  LCGR    ELR+     G + SVDA MNV +++V++      V+        + L+V  R+I +VHIPD++D+R T++   + +  V+Y     K R+
Sbjct:   16 SLVILLQGLCGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQGAVSQ------LDELFVTGRNIRYVHIPDEVDIRATIEEQLRAIHRVRYFGGRDKGRR 115          
BLAST of Gvermi12705.t1 vs. uniprot
Match: UPI0018934FEE (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018934FEE)

HSP 1 Score: 64.7 bits (156), Expect = 6.880e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 0
Query:    7 ATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDVSYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKR 99
            A SL  +L  L GR+   ELRN + V GT++SVDA MNV +S+ +       V  P     +   +V  R + ++HIPDDID+  ++ L   R
Sbjct:   11 AKSLVLMLQTLRGRQTTIELRNELSVWGTVESVDAFMNVDVSNAT-------VVGPNGEENYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
The following BLAST results are available for this feature:
BLAST of Gvermi12705.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J738_9FLOR1.570e-2654.00U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A6M2CNV9_RHIMP2.920e-1238.71Putative u6 snrna-associated sm-like protein lsm2 ... [more]
A0A6M2CMZ5_RHIMP6.220e-1238.71Putative u6 snrna-associated sm-like protein lsm2 ... [more]
L7M216_RHIPC6.360e-1238.71Sm domain-containing protein n=4 Tax=Rhipicephalus... [more]
UPI00189816808.770e-1238.95U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A1E1XKJ8_9ACAR1.820e-1138.71Putative small nuclear ribonucleoprotein smd1 n=2 ... [more]
A0A131X8Y5_9ACAR2.300e-1138.46Putative small nuclear ribonucleoprotein smd1 n=1 ... [more]
UPI000A2A7FE22.360e-1137.61U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A803VJW4_FICAL3.490e-1134.91LSM10, U7 small nuclear RNA associated n=27 Tax=Pa... [more]
UPI0018934FEE6.880e-1137.63U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..57
e-value: 1.2E-8
score: 34.5
NoneNo IPR availableGENE3D2.30.30.100coord: 2..95
e-value: 1.2E-16
score: 62.0
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 8..113
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1077673..1078183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12705.t1Gvermi12705.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1077673..1078183 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12705.t1 ID=Gvermi12705.t1|Name=Gvermi12705.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=116bp
MGSSGQATSLTFLLHALCGRKLYFELRNNIEVEGTLDSVDANMNVTISDV
SYKMPSQHVTSPPAPLFFELLYVAARHITFVHIPDDIDVRETMDLYSKRL
EAVKYASSGGKRRKT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf