Gvermi12683.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12683.t1
Unique NameGvermi12683.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length247
Homology
BLAST of Gvermi12683.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 270 bits (689), Expect = 4.750e-88
Identity = 141/243 (58.02%), Postives = 174/243 (71.60%), Query Frame = 0
Query:    4 LFTILCASLFFTLVFATVSTDSATRRVDEVDTPLTEGAPQQAEVQAAIDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKFAGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF 246
            LF  LCA+      FATV+T SA RR+DE+DTPLT+G   +AEVQ A+ I   T C+PNICFAVDGSGSM+  EF+LE DF  LVAAV++ D +++FA +QYGLRP+FIS LT++A  FL  V  T  + APRTFIAPG+AGC RQ   +  +P  IV+LGDG SNFD+  PPLDP +IAQ FLANPN TISAVGVG     +ML  IAG  + VF   +W+ V  VLA+LV +VCG+ AVEF
Sbjct:    7 LFFALCAA-----AFATVTTTSADRRIDELDTPLTKGTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCGLDAVEF 244          
BLAST of Gvermi12683.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 239 bits (609), Expect = 5.680e-76
Identity = 124/244 (50.82%), Postives = 165/244 (67.62%), Query Frame = 0
Query:    3 RLFTILCASLFFTLVFATVSTDSATRRVDEVDTPLTEGAPQQAEVQAAIDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKFAGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF 246
            R F + CA  FF + FA V       R++ +++PLT GA  +A++  A++IV  T C PN+CFA+DGS S+ D EF+L+LDFV L+  ++SLD +S ++ IQYGLRP+F+S  T +A  FLL V+ T  +++ RTFIAPGI GC RQ  RV  Q  KI++LGDG S FD+  PPLDP +IA  FLA PN +I AVGV  +    +LE I G  DRVF+  +WM+V+ VLADLV  VCG  AVEF
Sbjct:    4 RTFFLCCA--FFAVCFAVVPE----ARIEALNSPLTTGAANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVS-FDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVCGADAVEF 240          
BLAST of Gvermi12683.t1 vs. uniprot
Match: A0A2V3IPP3_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP3_9FLOR)

HSP 1 Score: 190 bits (483), Expect = 7.070e-57
Identity = 102/222 (45.95%), Postives = 140/222 (63.06%), Query Frame = 0
Query:   22 STDSATRRVDEVDTPLTEGAPQQAEVQAAIDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKFAGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSA 243
            S  +A R V + ++ LT+       V+AA+D+V    CN NICFAVDGSG M+  +FK++LDF+ LVA ++SLDP S++A +QYG R   IS LT +   FLL+V  TV   + RTF+A GI+ C RQL R      KIV+LGDG S F    PP DP +++Q FL++P+  I AVGV +++  SMLE I G A +VF   +W +V+  L  LV  VCG  +
Sbjct:   20 SYQTALRSVLDPNSLLTKSEENMKFVKAAMDVVRKKKCNLNICFAVDGSGYMHGKDFKMQLDFINLVAGIVSLDPTSRYAAVQYGRRSSVISRLTRDTKSFLLNVKGTVQQCSSRTFVARGISRCARQLRRAKRGAKKIVVLGDGRSRFQTYGPPRDPVSVSQAFLSDPSHGICAVGV-NFRDTSMLEQITGDASKVFMVSDWESVLDALDALVVQVCGAES 240          
BLAST of Gvermi12683.t1 vs. uniprot
Match: A0A2V3ITK9_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK9_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 2.900e-56
Identity = 103/223 (46.19%), Postives = 141/223 (63.23%), Query Frame = 0
Query:   24 DSATRRVDEVDTPLTEGAPQQAEVQAAIDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKFAGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF 246
            ++A +R++ +DTPLT        +  A   V    C+PN+CFA+DGS ++N   F+L+ DFVKLVA VISLD +S+FA +QYGLR   IS LT +A  FLL VD    +   RTF+A GI GC +QL++ P +   IV+LGDGD +        +  ++A+ FL +P+  ISAV VG +   S LE I G+ +RVF  DEW  V+ V A+LV DVCG+ AVEF
Sbjct:   46 EAARKRLERIDTPLTRSPSAMMSLARAFGEVAGGGCDPNVCFALDGSRTINSTNFQLQKDFVKLVAGVISLDEQSQFAALQYGLRSDVISDLTLDAEDFLLKVDGAKKVGYRRTFVAFGIFGCIQQLLKTPFEANHIVLLGDGDDDILVRHSGFNAESVAKRFLFSPHNAISAVAVG-FSDTSHLERIVGNPNRVFEVDEWAEVVDVTAELVEDVCGLDAVEF 267          
BLAST of Gvermi12683.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 110 bits (274), Expect = 1.200e-25
Identity = 68/182 (37.36%), Postives = 105/182 (57.69%), Query Frame = 0
Query:   59 CNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKFAGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPN-QPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVC 239
            CN  +CFA+DGSGS++  +FK++ D VKL+A+V + +  + F+ +QYGL    IS  T NA +F   VD ++  +APRTFI  G+  C   L   P  +  +I++LGDG SNF  LA PL  +T+        +  ISAVG+G  + +  L  I GS  R+   + + ++  ++  LV  +C
Sbjct:   65 CNMRLCFALDGSGSISPVQFKVQQDLVKLLASV-AREGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNFFTLALPLVLSTLN-------DIQISAVGIGFPRNSRTLLDITGSRSRLCAVNRYSDIRRIVFKLVRGLC 238          
BLAST of Gvermi12683.t1 vs. uniprot
Match: UPI000C04B899 (agrin-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04B899)

HSP 1 Score: 57.4 bits (137), Expect = 8.190e-6
Identity = 51/177 (28.81%), Postives = 77/177 (43.50%), Query Frame = 0
Query:   58 NCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPE-SKFAGIQYGLRPRFISMLTDNAGQ----FLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPN-----QPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEW 224
            N   ++ FA+DGS S++D E++L  DFVK V    S+  + +  A +QY           D+  +     L +V+    ++   T I  G+    +++    N        K+ I      N D +A   D +  A      PN T  AVGVGD  V   L  IA S D VF  +E+
Sbjct: 1116 NVKFDVGFAIDGSNSIDDNEYRLTKDFVKDVIKAFSISEDGTHVALLQYASIGTMEIYFNDDEYRDPDLLLKEVENVRALRGAATDIGDGLEVALKEMFSTKNGMRGNDVKKLFIFFTDGRNTDTVA---DLSVKANQIKNIPNMTSIAVGVGDIVVRDELLTIASSEDEVFELEEF 1289          
BLAST of Gvermi12683.t1 vs. uniprot
Match: A0A2B4SE78_STYPI (Agrin n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SE78_STYPI)

HSP 1 Score: 57.4 bits (137), Expect = 8.960e-6
Identity = 51/177 (28.81%), Postives = 77/177 (43.50%), Query Frame = 0
Query:   58 NCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPE-SKFAGIQYGLRPRFISMLTDNAGQ----FLLDVDKTVHMKAPRTFIAPGIAGCWRQLMRVPN-----QPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVGDYQVASMLEGIAGSADRVFTADEW 224
            N   ++ FA+DGS S++D E++L  DFVK V    S+  + +  A +QY           D+  +     L +V+    ++   T I  G+    +++    N        K+ I      N D +A   D +  A      PN T  AVGVGD  V   L  IA S D VF  +E+
Sbjct: 4631 NVKFDVGFAIDGSNSIDDNEYRLTKDFVKDVIKAFSISEDGTHVALLQYASIGTMEIYFNDDEYRDPDLLLKEVENVRALRGAATDIGDGLEVALKEMFSTKNGMRGNDVKKLFIFFTDGRNTDTVA---DLSVKANQIKNIPNMTSIAVGVGDIVVRDELLTIASSEDEVFELEEF 4804          
The following BLAST results are available for this feature:
BLAST of Gvermi12683.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IQR5_9FLOR4.750e-8858.02Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ISA4_9FLOR5.680e-7650.82VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IPP3_9FLOR7.070e-5745.95Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ITK9_9FLOR2.900e-5646.19VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q3A9_CHOCR1.200e-2537.36VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
UPI000C04B8998.190e-628.81agrin-like n=1 Tax=Stylophora pistillata TaxID=504... [more]
A0A2B4SE78_STYPI8.960e-628.81Agrin n=1 Tax=Stylophora pistillata TaxID=50429 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 60..232
e-value: 5.6E-5
score: 32.5
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 62..226
e-value: 5.4E-14
score: 52.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 62..238
score: 12.489398
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 54..244
e-value: 2.8E-19
score: 71.8
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 58..225
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..246
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableCDDcd00198vWFAcoord: 62..217
e-value: 8.42634E-13
score: 62.5834

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:820451..821191 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1Gvermi12683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 820451..821191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=247bp
MFRLFTILCASLFFTLVFATVSTDSATRRVDEVDTPLTEGAPQQAEVQAA
IDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKF
AGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQL
MRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVG
DYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf