Gvermi12513.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12513.t1
Unique NameGvermi12513.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length226
Homology
BLAST of Gvermi12513.t1 vs. uniprot
Match: A0A2V3IEM0_9FLOR (Endonuclea_NS_2 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEM0_9FLOR)

HSP 1 Score: 189 bits (479), Expect = 8.410e-57
Identity = 106/215 (49.30%), Postives = 129/215 (60.00%), Query Frame = 0
Query:   17 DAYSIHNETISSPVGADFLPSIVH---QSALDRWKDSFKNCGGSLIIRGNSGIEPATRITATIKPACRKNGSR---PFSRAIYGWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVYANLFPCWQTQFNTPVMSNCENVVASELKAGNTVIYDTTLEYKSSNPWPTSIIIEAEKINKNRKRSKLYKVRIENTELAKLTNI 225
            D + + N T         LP ++    +SA D W   +K CGG+L+I   SG +PA +ITATI  +C   GS+   P    IYGWDDFK+FV  K+           P   P+ WARCHIIA QLGG+GN YANLFPCWQT+FN P MS CE      +K G  V+Y+ TLEY SSNPWPT+I I+A    K     KLY VRIENT+ AKLTNI
Sbjct:   28 DVFHLVNTTHPPDFDDQSLPILLRAPKRSAKDIWIQKYKACGGNLVISTQSGNKPAMKITATIVKSCLAIGSKVRIPKHSDIYGWDDFKKFVGNKRKR---------PGSAPL-WARCHIIAKQLGGRGNAYANLFPCWQTEFNHPRMSQCEAAAVKAVKQGKKVVYEVTLEYGSSNPWPTAIKIKATASGK-----KLYNVRIENTQAAKLTNI 227          
BLAST of Gvermi12513.t1 vs. uniprot
Match: UPI001986D9EA (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces melanogenes TaxID=67326 RepID=UPI001986D9EA)

HSP 1 Score: 66.2 bits (160), Expect = 4.100e-9
Identity = 56/188 (29.79%), Postives = 76/188 (40.43%), Query Frame = 0
Query:   53 NCGGSLIIRGNSGIEPATRITATIKPACRKNGSRPFSRA-----------IYGWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVY----ANLFPCWQTQFNT--PVMSNCE----NVVASELKAGNTVIYDTTLEYKSSNPW-PTSIIIEAEKINKNRKRSKLYKVRIENTE 218
            N GG  I+     +    R   T +   R  G++   R            I GW D + FV     G  +              +RCH+IAN LGGKG +     ANL PCWQ   NT  P M   E    + VAS     + V Y  T  YK S+   PT + + A     +R ++ L+   I NT+
Sbjct:  221 NSGGGWILNSTDPVPHRNRTDPTSQAGTRAAGAQACLRKPLGSGSAASGDITGWQDAQLFVATNSPGTAI--------------SRCHLIANVLGGKGQILDGGQANLVPCWQVGMNTGTPSMRTYEKQVQDAVASTTGPDDAVFYVVTPLYKDSDSTIPTGVTVSASLQRADRTQTLLFVTTISNTQ 394          
BLAST of Gvermi12513.t1 vs. uniprot
Match: UPI00099B5D28 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces caatingaensis TaxID=1678637 RepID=UPI00099B5D28)

HSP 1 Score: 65.9 bits (159), Expect = 5.030e-9
Identity = 57/196 (29.08%), Postives = 81/196 (41.33%), Query Frame = 0
Query:   53 NCGGSLIIRGNSGIEPATRITATIKPACRKNGSR-----------PFSRAIYGWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNV----YANLFPCWQTQFNT--PVMSNCEN-----VVASELKAGNTVIYDTTLEYKS-SNPWPTSIIIEAEKINKNRKRSKLYKVRIENTELAKLTNI 225
            N GG  I   ++ +    R   T     R  G+R           P S  I GW D + FV K   G  +              ARCH+IAN LGGKG V      NL PCWQ   NT  P M   E      V+A++++  + V Y  T  Y+  ++  PT +++ A     N  +  ++   I NT+     N+
Sbjct:  181 NSGGGWIQNSSAPVPHRNRTDPTSPAGTRAGGARACLRWPLGEGSPASGDITGWKDAQDFVDKNPPGAAI--------------ARCHLIANTLGGKGQVRDGGQDNLVPCWQVGMNTGTPSMWTYERQVKQKVMAADMRPDDAVYYMVTPLYRDDASTIPTGVVMSAAVQRANGAQELMFTEGIPNTQARSGLNL 362          
BLAST of Gvermi12513.t1 vs. uniprot
Match: M3B695_STRMB (Endonuclea_NS_2 domain-containing protein n=5 Tax=Streptomyces mobaraensis TaxID=35621 RepID=M3B695_STRMB)

HSP 1 Score: 60.8 bits (146), Expect = 2.810e-7
Identity = 53/167 (31.74%), Postives = 73/167 (43.71%), Query Frame = 0
Query:   74 ATIKPACRKNGSRPFSRA---IYGWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVY----ANLFPCWQTQFNT--PVMSNCENVVASELK-----AGNTVIYDTTLEYKS-SNPWPTSIIIEAEKINKNRKRSKLYKVRIENTELAKLTNI 225
            AT   AC +N     S A   I GW D ++FV               PP   I  ARCH+IAN LGGKG +     ANL PCWQ   NT  P M   E  V  ++        + V Y  T  Y+  ++  PT +++ A+    N   S ++   + NT+     N+
Sbjct:  249 ATGAQACLRNPLGTGSAASGDITGWQDAQQFVATH------------PPAAAI--ARCHLIANILGGKGQILDGGQANLVPCWQVGMNTGTPSMRTYEKQVQDQVADPGMGPDDAVFYQVTPLYQDGASTIPTGVVMSAKVQRANGTESLMFTTSVPNTQATSGLNL 401          
BLAST of Gvermi12513.t1 vs. uniprot
Match: A0A372GLZ1_9ACTN (Uncharacterized protein n=2 Tax=Actinomadura sp. LHW52907 TaxID=2303421 RepID=A0A372GLZ1_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 5.600e-7
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 0
Query:  117 VPPLRPIPWARCHIIANQLGGKGNVYANLFPCWQTQFNTPVMSNCENVVASELKAGNTVIYDTTLEYKSSNPWPTSIIIEA 197
            +P  R   +ARCH+IA QLGG G    NL  C Q+  N+PVMS  E  VA  +++G  V Y  +  Y+  N  P  I + A
Sbjct: 3024 LPETRQHKYARCHLIAQQLGGDGTNPNNLVTCMQSPVNSPVMSGLEGQVARAVESGQQVGYWVSPIYRRGNTKPDKIRLTA 3104          
BLAST of Gvermi12513.t1 vs. uniprot
Match: UPI0015C2C52A (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces rectiverticillatus TaxID=173860 RepID=UPI0015C2C52A)

HSP 1 Score: 58.9 bits (141), Expect = 1.270e-6
Identity = 46/144 (31.94%), Postives = 60/144 (41.67%), Query Frame = 0
Query:   94 GWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVY----ANLFPCWQTQFNT--PVMSNCEN-----VVASELKAGNTVIYDTTLEYKSSNPW-PTSIIIEAEKINKNRKRSKLYKVRIENTELAKLTNI 225
            GW+D K FV K   G  +              +RCH+IAN LGGKG V     ANL PCWQ   NT  P M   E      V    +   + V Y  +  YK  +   PT +I+ A     +     L+   I NT+     N+
Sbjct:  276 GWEDAKDFVAKHAPGTAI--------------SRCHLIANILGGKGQVKDGGRANLVPCWQVGMNTGTPSMRTYEKKVQDAVAEPSMGPNDAVFYQVSPTYKGGDSTIPTGVIMSAAVQRADTSEQLLFVTAILNTQAKNGLNL 405          
BLAST of Gvermi12513.t1 vs. uniprot
Match: F8K2Y1_STREN (Bulb-type lectin domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=F8K2Y1_STREN)

HSP 1 Score: 58.2 bits (139), Expect = 2.270e-6
Identity = 59/172 (34.30%), Postives = 75/172 (43.60%), Query Frame = 0
Query:   68 PATRITATIKPACRKNGSRPFSRA---IYGWDDFKRFVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNV----YANLFPCWQTQFNT--PVMSNCENVVASELKA--GNTVI-YDTTLEYKSSNPW-PTSIIIEAEKINKNRKRSKLY-KVRIENTELAKLTNI 225
            P TR  A +  AC +N     S A   I G  D ++FV     G  V              ARCH+IAN LGGKG V     ANL PCWQ   NT  P M   E      +K   GN  I Y+ T +Y SS    P  + + A     N  R +L+  + I NT+ +   N+
Sbjct:  238 PGTR--AAMARACLRNPPGEGSVASGDITGLQDAQKFVAAHAPGAVV--------------ARCHLIANVLGGKGQVRDGGQANLVPCWQVGMNTGTPSMRTYEQETRRAIKGLGGNDAIFYEVTPDYLSSTSTIPYGVTMSATVERANGTRQQLFGNIVIPNTQASSGLNL 393          
The following BLAST results are available for this feature:
BLAST of Gvermi12513.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IEM0_9FLOR8.410e-5749.30Endonuclea_NS_2 domain-containing protein n=1 Tax=... [more]
UPI001986D9EA4.100e-929.79DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
UPI00099B5D285.030e-929.08DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
M3B695_STRMB2.810e-731.74Endonuclea_NS_2 domain-containing protein n=5 Tax=... [more]
A0A372GLZ1_9ACTN5.600e-740.74Uncharacterized protein n=2 Tax=Actinomadura sp. L... [more]
UPI0015C2C52A1.270e-631.94DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
F8K2Y1_STREN2.270e-634.30Bulb-type lectin domain-containing protein n=3 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044929DNA/RNA non-specific endonuclease superfamilyGENE3D3.40.570.10Extracellular Endonuclease, subunit Acoord: 65..221
e-value: 3.4E-21
score: 77.4
IPR044927Type VII secretion system protein EssD-likePFAMPF13930Endonuclea_NS_2coord: 126..199
e-value: 7.1E-12
score: 45.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..225
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5988111..5988788 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1Gvermi12513.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 5988111..5988788 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=226bp
MMLRFLFLILFGLSISDAYSIHNETISSPVGADFLPSIVHQSALDRWKDS
FKNCGGSLIIRGNSGIEPATRITATIKPACRKNGSRPFSRAIYGWDDFKR
FVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVYANLFPCWQ
TQFNTPVMSNCENVVASELKAGNTVIYDTTLEYKSSNPWPTSIIIEAEKI
NKNRKRSKLYKVRIENTELAKLTNI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044929DNA/RNA_non-sp_Endonuclease_sf
IPR044927Endonuclea_NS_2