Gvermi12510.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12510.t1
Unique NameGvermi12510.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length292
Homology
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A0L7LDT2_9NEOP (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LDT2_9NEOP)

HSP 1 Score: 76.3 bits (186), Expect = 5.050e-12
Identity = 61/268 (22.76%), Postives = 119/268 (44.40%), Query Frame = 0
Query:    8 TFKIEIING-DNYFSWKFGMTNYLKKKGYWKAVGEEENNATANEKALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHFTSKRLH-----EGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKK-----------PEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTV 258
            T  IE + G  NY +WKF +   L   G W  +   E +   +++AL  I L +      Y+ +  T   AW  LA+++ENKG+  ++        ++LH     +  S  ++I+ +  L  +L  +       E    LL  LP+ +E LV+  +++      L +       R   ++E L++            +  T+ + +   +     G +++    N   +   +++VL+VP++ATN++S+ K  E G  + F    C++
Sbjct:   34 TSSIEKLEGVSNYLNWKFAIKMLLTMDGLWNTIEGTETDLVRDQRALARIALCIKPALYQYIRNATTAKGAWKNLADIFENKGLLRRV-----LLLRQLHRIDYTQFSSMSEYIQGVMTLVQQLSDIGRKTDDAEVAEILLSGLPQEFEYLVSNLETV-----CLTNDLTSEIVRTRLLQEELRRNMVNYKDFNRNAKHTTVAVANNEQLKCNGVGDLMV----NFGNEVRQLKNVLYVPQLATNLMSVSKFVESGFTVEFNGNGCSI 287          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A1Y1IQ98_KLENI (Protein with ribonuclease H-like and integrase domains n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQ98_KLENI)

HSP 1 Score: 76.3 bits (186), Expect = 6.420e-12
Identity = 64/257 (24.90%), Postives = 113/257 (43.97%), Query Frame = 0
Query:   11 IEIINGDNYFSWKFGMTNYLKKKGYWKAVGEEENNATANEKALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKKP------EPVTIRLG----DGTHVNSTEKGSILMEISMNGSMKTLPVQ-DVLFVPEIATNILSIGKIDERGHRIYFQKGWC 256
            I+ ++ +NY +W   +   L  K  W  V +   +   ++KAL  I L+V+D+    +E CK   EAW+ L + Y++K  A KM   +   S ++  GE    ++   K L   L    ++   +E    +L  LPK +  L T  ++ E  I ++          +   EE+ K+         V    G    +  H     +G       + GS+ TLP   +V++VP +A N++S+ K  E    ++ + G C
Sbjct:    9 IDKLDVENYRTWSSKIKFLLTSKDLWNGVKDPVAHPAQSKKALSIIGLNVEDHHLGSIEECKPAKEAWDLLEKTYKSKTNARKMQLRQELHSLKMKSGEPVTMYVGRAKNLYRDLVATGVEMKPDELAWSVLAGLPKTFSILRTILEASESAISSVDAILPKLLVHEQGFEESPKEKGGGGSDSAVAYVAGQKGKEKVHGKDESRGKGPTSAIIGGSLVTLPGSANVMYVPGVAANLISVSKATEVASVLFKENGNC 265          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A4C1ZLS2_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZLS2_EUMVA)

HSP 1 Score: 72.8 bits (177), Expect = 4.170e-11
Identity = 48/159 (30.19%), Postives = 79/159 (49.69%), Query Frame = 0
Query:    7 STFKIEIINGDNYFSWKFGMTNYLKKKGYWKAVG-------EEENNATA-----NEKALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLV 153
            S ++I+ ++  NY +W   M + L   GYW  V        EEE+         ++KAL  I L ++  Q  +++SCKT +EAWN L EV+   G   K+   +   +K++ E  S  +H+     +  KL ++ ++  +E   + LL SLP  YE  V
Sbjct:    2 SLYQIDKLSDSNYDAWSIHMKSVLVHSGYWNIVSGKETADDEEESKRKEKWPERDQKALATITLCINAAQLSHIKSCKTSSEAWNTLKEVFRPSGPVKKVYLYKQLLNKKMSEDGSMSEHLRSFSEIVDKLAEVGIELHEELVTIILLSSLPAQYEQFV 160          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A438HDU0_VITVI (DUF4219 domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HDU0_VITVI)

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-10
Identity = 62/274 (22.63%), Postives = 120/274 (43.80%), Query Frame = 0
Query:   13 IINGDNYFSWKFGMTNYLKKKGYWKAVGEEEN------NATANE----------KALIDICLSVDDNQNVYVESCK--TGTEAWNALAEVYENKGMANKMDPEE---HFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTVLSKHSNE 265
            I++GDNY +W   MT +L+    W+AV E         N T  +          KA    CL    + +++++  K  +  E W  L E Y+       M        F  K++ E ++ K +  +L  +  K++ L  + + E+ + ++L+      E+    +   E  ++   + F   +        T+ K     +R+G+G ++    KG++ +E      +    + DVLFVP+I  N+LS+G++ E+  ++YF+   C +      E
Sbjct:   12 ILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILQE-----ETSAAVDYCQEEQLFVATYLFRELDRT------TISK-----VRIGNGEYIPVKGKGTVAIESQTGLKL----IYDVLFVPDIDQNLLSVGQLVEKEFKVYFEDRNCIIKDAEGKE 265          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 71.2 bits (173), Expect = 3.980e-10
Identity = 70/272 (25.74%), Postives = 117/272 (43.01%), Query Frame = 0
Query:   14 INGDNYFSWKFGMTNYLKKKGYWKAV----GEEENNATA--NEKALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLVTK-EKSMEHGIWTLVHPFNMTNNRKLFMEETLKK---PEPVTIRLGDGTHVNSTEKGSILMEISM---NGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTVLSKHSNEKLLQVKK 272
            +N DNY +W       L +K  W+AV    G + N A    N++AL  + L V+D     +  C    +AW  L E++   G+ + +     F +  +   ES + ++  L  L+ KL       T  +  + +L  LP+ YESL+   EK   +   T+V P  +   +++   E+  K    E      G  T+      G  +   +    N            F  E+  N+LSIG+I+ERG ++ F +G   V+ K+ +  L   KK
Sbjct:    4 LNRDNYHTWCIRSRAVLVQKRCWEAVEPGYGIQMNEAQRKMNDEALTLLFLIVEDTFLHDIGDCIRARDAWTCLKEMHTKFGLLHVLQLMREFFNINMKPNESVQSYLARLMDLRGKLANGGYAFTDRKVALVMLLGLPRSYESLILSLEKDEANLTTTIVKPRLLVEEKRIIRNESSAKVYHEEQALHTKGFATNQKKPAFGKPMKNYAAKRPNEEETNRGRSTTCFSCELGGNLLSIGRIEERGLKVEFPEGKAKVIGKNGDTLLSGEKK 275          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A5AWN8_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AWN8_VITVI)

HSP 1 Score: 70.9 bits (172), Expect = 5.230e-10
Identity = 72/286 (25.17%), Postives = 132/286 (46.15%), Query Frame = 0
Query:   13 IINGDNYFSWKFGMTNYLKKKGYWKAVGEE----------------ENNATANEKALIDICL--SVDDNQNVYVESCKTGTEAWNALAEVYE-NKGMANK--MDPEEHFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTK---EEYIMRLLRSLPKIYESLVTKEKSMEHGIWTLVHPFN----------------MTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTV 258
            I NG+NY +W   MT +L+    W+A+ E+                 +      KA    CL  +V       +   ++  E WN L E Y+ N+ + N   M+  + F   R+ E ++ K + E+L  +  K++ L +   K   + +I R+ R+  +  E+ V  E+  E  +++     N                MT ++ LF E  + +     +R+G+G ++    KG++ +E S+ G +K +   DVLFVP I  N+LS+G++ E+G ++ F+   C +
Sbjct:   12 IFNGENYQTWAIRMTVHLQALDVWEAIEEDYEISPLGANPTVAQMKNHKEKKTRKAKAKACLFSAVSPLILTKIVQLESAAEIWNHLREEYQGNERVRNMQVMNLIQEFEIVRIKESQTIKDYAEQLLTITNKVRLLDVKCNKCGRQGHIERICRTQQQQGETNVAAEQYQEKQLFSATCFANGSTSKSWLVDSGCTNHMTYDQDLFRE--IDRTAISKVRIGNGEYIPVKGKGTVAIE-SLTG-LKFI--SDVLFVPNIDQNLLSVGQLVEKGFKVCFEDRNCII 291          
BLAST of Gvermi12510.t1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045)

HSP 1 Score: 68.9 bits (167), Expect = 2.020e-9
Identity = 56/258 (21.71%), Postives = 108/258 (41.86%), Query Frame = 0
Query:   10 KIEIING-DNYFSWKFGMTNYLKKKGYWKAVGEEEN-NATANEKALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHFTSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYESLVTKEKS-MEHGIWTLVHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTVLSKHSN 264
            +IE + G DNYF+WKF + +YL+ +  W+ +    + +   + KA   I L V+    V++E+ KT  E W  L  V+E+ G++ K+                                 L+ D         L+ +   I  S+     S +    W +     M   R+       + P    I++ +   +     G + ++  +N     + V++VLF+P++ TN+LSI ++ + G ++ F    C + + + N
Sbjct:    7 QIEKLAGRDNYFTWKFAVMSYLQLEELWECIEPGTDVDLKKDVKATSKIILLVEPMNYVHIENAKTAKEVWENLQNVFEDSGLSRKVG--------------------------------LLKD---------LINTSLDICGSIAFSAYSTLNQDDWYIDSGATMHMTRRSDWMYDEQSPPVHRIKVANSEAIPVQSMGKVNIQTKLNKDEHRIQVRNVLFIPKLTTNLLSISQLTKSGCKVEFTNTGCNIYNGNKN 223          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A151T4X1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T4X1_CAJCA)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-9
Identity = 35/101 (34.65%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  171 NMTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTVLSKHSNEKLLQVK 271
            +MT++++LF E  LK  E   +R+G+G H+    KG+I +E  +   +    + DVL+VPEI  N+LS+G++ E+G+++YF+  +C ++   S +++ +VK
Sbjct:   54 HMTHDKELFKE--LKGTETSKVRIGNGQHIAVKGKGTIAIESCLGTKL----IYDVLYVPEIDQNLLSVGQLMEKGYKVYFEDKFC-LIKDASGQEIFKVK 147          
BLAST of Gvermi12510.t1 vs. uniprot
Match: A0A5N5JA73_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5JA73_9ROSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-8
Identity = 37/109 (33.94%), Postives = 67/109 (61.47%), Query Frame = 0
Query:  171 NMTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTVLSKHSNEKLLQVKKENSTHCF 279
            +MTN++KLF  ++L   E   +++G+G +++   KG+I +  S    +    + DVL+VPEI  N+LS+G++ ERG ++ F+ G C V   +  E++L+VK +  +  F
Sbjct:  137 HMTNDKKLF--KSLMPTEITKVKIGNGDYISVEGKGTITITSSSGVKL----ISDVLYVPEINQNLLSVGQLIERGLKVVFEDGCCQVFDAN-REEILKVKMKGKSFSF 238          
BLAST of Gvermi12510.t1 vs. uniprot
Match: UPI0005F4A6DE (uncharacterized protein LOC105557114 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F4A6DE)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-8
Identity = 33/112 (29.46%), Postives = 62/112 (55.36%), Query Frame = 0
Query:  149 YESLVTKEKSMEHGIWTL--VHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHVNSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIYFQKGWCTV 258
            Y +  T + +++   W L      +MT N+K   +    +   + +    G  + +  KG++ + +S+NG+   +PVQ+VL VP++  N+LS+ KI E+GH + F+K  CT+
Sbjct:  198 YSAFATLQGTIDKLEWFLDSCASAHMTGNKKWLRDA---QDTNIAVMTSSGEKLTTAAKGTVTLNLSVNGAEAAIPVQEVLHVPDLTANLLSVSKIVEKGHIVTFRKEGCTI 306          
The following BLAST results are available for this feature:
BLAST of Gvermi12510.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L7LDT2_9NEOP5.050e-1222.76Putative retrovirus-related pol polyprotein from t... [more]
A0A1Y1IQ98_KLENI6.420e-1224.90Protein with ribonuclease H-like and integrase dom... [more]
A0A4C1ZLS2_EUMVA4.170e-1130.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HDU0_VITVI1.600e-1022.63DUF4219 domain-containing protein n=1 Tax=Vitis vi... [more]
A0A087T1Z9_STEMI3.980e-1025.74Retrovirus-related Pol polyprotein from transposon... [more]
A5AWN8_VITVI5.230e-1025.17Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
UPI001F12C0452.020e-921.71uncharacterized protein LOC124543428 n=1 Tax=Vanes... [more]
A0A151T4X1_CAJCA2.130e-934.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5JA73_9ROSI1.000e-833.94Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
UPI0005F4A6DE1.050e-829.46uncharacterized protein LOC105557114 n=1 Tax=Volle... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..135
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 48..156
e-value: 3.1E-22
score: 78.8
NoneNo IPR availablePANTHERPTHR34676:SF12ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATEDcoord: 7..182
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 7..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5893701..5894862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1Gvermi12510.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 5893701..5894862 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=292bp
MDIGEKSTFKIEIINGDNYFSWKFGMTNYLKKKGYWKAVGEEENNATANE
KALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHF
TSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYE
SLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHV
NSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIY
FQKGWCTVLSKHSNEKLLQVKKENSTHCFKSSKKIEEKYVP*
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