Gvermi12508.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12508.t1
Unique NameGvermi12508.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length219
Homology
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A2V3ISS6_9FLOR (Serine hydroxymethyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISS6_9FLOR)

HSP 1 Score: 167 bits (422), Expect = 1.730e-45
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 0
Query:   73 LTDNTPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            LT N PL +Q  + H LL+ +KS + R LE IA EN TS+ VL  L +VF NKYS+G PG RYY G  V+ +V+ +CR  ALAAF L+P L  VN+QPYS S ANF +YT L NPHD IMG ++PSGGHL+H FYTPK+RVS TSI
Sbjct:   44 LTGNIPLREQDPEVHHLLELEKSRQWRGLELIASENFTSSAVLECLGSVFTNKYSEGYPGVRYYGGNEVIDKVESLCRSRALAAFDLNPELWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGFYTPKKRVSATSI 189          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A7S0BKU8_9RHOD (Serine hydroxymethyltransferase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKU8_9RHOD)

HSP 1 Score: 156 bits (394), Expect = 1.890e-41
Identity = 82/143 (57.34%), Postives = 99/143 (69.23%), Query Frame = 0
Query:   76 NTPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            N PL +   + + LLQ++K  + R LE IA EN TS  VL  L +VF NKYS+G PG RYY G  VV +V+ +C+  AL AF LDPS   VN+QPYS S ANF  YT L NPHD IMG ++PSGGHL+H FYTPK+RVS TSI
Sbjct:   47 NVPLEEADPEVYGLLQEEKRRQWRGLELIASENFTSKAVLDTLGSVFTNKYSEGYPGARYYGGNEVVDKVERLCQQRALEAFDLDPSEWGVNVQPYSGSPANFAVYTALLNPHDRIMGLDLPSGGHLTHGFYTPKKRVSATSI 189          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A7J7IHC2_9RHOD (Serine hydroxymethyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHC2_9RHOD)

HSP 1 Score: 155 bits (391), Expect = 7.480e-41
Identity = 86/181 (47.51%), Postives = 108/181 (59.67%), Query Frame = 0
Query:   38 STSGCGNIFPTPPLMSVYPVNLDKTIRAQVRVRWPLTDNTPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            +TS      PTPP  S  P               P T   PL       H++L+++K  +RR LE IA EN TSA V+  L + F NKYS+G PG RYY G   + +V+ +C++ ALAAF L P+   VN+QPYS S ANF  YT L NPHD IMG ++PSGGHL+H FYT K+RVS TSI
Sbjct:   55 ATSRSSPAAPTPPAESQSPA--------------PRTGTEPLELVDPLVHQILEKEKDRQRRGLELIASENFTSAAVMEALGSAFTNKYSEGYPGRRYYGGNKYIDEVERLCQERALAAFGLSPAEWGVNVQPYSGSPANFAVYTALLNPHDRIMGLDLPSGGHLTHGFYTAKKRVSATSI 221          
BLAST of Gvermi12508.t1 vs. uniprot
Match: M1V536_CYAM1 (Serine hydroxymethyltransferase n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V536_CYAM1)

HSP 1 Score: 148 bits (373), Expect = 2.760e-38
Identity = 75/141 (53.19%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   78 PLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            PL     + +++L+++K  +RR LE IA EN TSA V+  L + F NKYS+G PG RYY G   + +V+ +C++ ALAAF L P+   VN+QPYS S ANF  YT L NPHD IMG ++PSGGHL+H FYT K+RVS TSI
Sbjct:   78 PLRVYDPEVYQILEKEKERQRRGLELIASENFTSAAVMEALGSAFTNKYSEGYPGRRYYGGNMYIDEVERLCQERALAAFSLSPTDWGVNVQPYSGSPANFAVYTALLNPHDRIMGLDLPSGGHLTHGFYTAKKRVSATSI 218          
BLAST of Gvermi12508.t1 vs. uniprot
Match: J3N865_ORYBR (Serine hydroxymethyltransferase n=6 Tax=Oryzeae TaxID=147380 RepID=J3N865_ORYBR)

HSP 1 Score: 147 bits (370), Expect = 3.540e-38
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 0
Query:   77 TPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPK-RRVSVTSI 218
            TPL+      H LL+++K  +R  +E IA EN TS  V+  L +   NKYS+G PG RYY G  V+ +++++CRD ALAAF LDP+   VN+QPYS S ANF +YT L NPHD IMG ++PSGGHL+H +YTP+  ++S TSI
Sbjct:   10 TPLAAADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVIDEIENLCRDRALAAFRLDPASWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTPRGEKISATSI 152          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A3B4WY20_SERLL (Glycine hydroxymethyltransferase n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WY20_SERLL)

HSP 1 Score: 137 bits (344), Expect = 3.590e-37
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 0
Query:   85 QTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            + +R L ++K  +   +E IA EN TS  V+  L +   NKYS+G PG RYY G  ++ QV+++CR  ALAAF  DP+   VN+QPYS S ANF  YT L  PHD +MG ++PSGGHL+H +YT K+++S TSI
Sbjct:   15 EVYRFLLEEKKRQVNGIELIASENFTSKAVMECLGSCMTNKYSEGMPGARYYGGNQIIDQVENLCRSRALAAFNCDPAKWGVNVQPYSGSPANFAVYTALLTPHDRVMGLDLPSGGHLTHGYYTAKKKISATSI 148          
BLAST of Gvermi12508.t1 vs. uniprot
Match: W6KY12_9TRYP (Serine hydroxymethyltransferase n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KY12_9TRYP)

HSP 1 Score: 144 bits (362), Expect = 5.540e-37
Identity = 73/146 (50.00%), Postives = 98/146 (67.12%), Query Frame = 0
Query:   73 LTDNTPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            L  N  L +     HRL+Q++   + + LE +A EN TS  VL  L +VF NKY++G PG RYY G  VV +++++CRD ALAAF L P    VN+QP+S S ANF +YT L NPHD +MG ++PSGGHL+H FYT  +R+S +SI
Sbjct:   18 LPGNVSLKEHDPHVHRLIQKELLRQFQGLELVASENFTSRAVLECLGSVFTNKYAEGLPGSRYYGGTEVVDELENLCRDRALAAFGLSPDTWGVNVQPHSGSPANFATYTGLLNPHDRLMGLDLPSGGHLTHGFYTATKRISSSSI 163          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A843VN40_COLES (Serine hydroxymethyltransferase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VN40_COLES)

HSP 1 Score: 144 bits (362), Expect = 6.210e-37
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 0
Query:   76 NTPLSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPK-RRVSVTSI 218
            N PL+    + H L++++K  + R +E IA EN TS  V+  L T   NKYS+G PG RYY G   + Q++++CRD AL AF+LDP+   VN+QPYS S ANF +YT L NPHD IMG ++PSGGHL+H +YT   +++S TSI
Sbjct:    9 NAPLNVVDEEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGTALTNKYSEGMPGNRYYGGNEFIDQIENLCRDRALKAFHLDPAAWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A1J3JL29_NOCCA (Glycine hydroxymethyltransferase (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JL29_NOCCA)

HSP 1 Score: 138 bits (347), Expect = 7.730e-37
Identity = 69/140 (49.29%), Postives = 95/140 (67.86%), Query Frame = 0
Query:   79 LSQQAAQTHRLLQQKKSGKRRILEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            L Q   + + LLQ +++ + + LE IA EN TS  VL  L T+F NKYS+G PG+RYY G   + QV+++C   A  AF+L+P+   VN+QPYS S ANF  YT +  PHD IMG ++PSGGHL+H +YT K+++S TSI
Sbjct:   12 LEQSDPEIYDLLQHEQTRQWKGLELIASENFTSRAVLETLGTIFTNKYSEGLPGKRYYGGNEYIDQVENLCIARAQQAFHLNPTEWGVNVQPYSGSTANFAVYTAILQPHDRIMGLDLPSGGHLTHGYYTAKKKISATSI 151          
BLAST of Gvermi12508.t1 vs. uniprot
Match: A0A7S0H3N8_9EUKA (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3N8_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 8.680e-37
Identity = 73/145 (50.34%), Postives = 95/145 (65.52%), Query Frame = 0
Query:   76 NTPLSQQAAQTHRLLQQKKSGKRRI--LEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCRDCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGGHLSHVFYTPKRRVSVTSI 218
            N  L Q   + +++L  KK  KR+   LE IA EN TS  V+  L TVF NKYS+G PG+RYY G   + Q + +C+  AL AF++D     VN+QPYS S ANF  +T L  PHD IMG ++PSGGHL+H FYTPK+++S TSI
Sbjct:    9 NLSLEQADEEMYKIL--KKEEKRQFCGLELIASENFTSRAVMETLGTVFTNKYSEGLPGKRYYGGNEFIDQAERLCQSRALKAFHVDAKEWGVNVQPYSGSPANFAVFTALLKPHDRIMGLDLPSGGHLTHGFYTPKKKISATSI 151          
The following BLAST results are available for this feature:
BLAST of Gvermi12508.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISS6_9FLOR1.730e-4558.90Serine hydroxymethyltransferase n=1 Tax=Gracilario... [more]
A0A7S0BKU8_9RHOD1.890e-4157.34Serine hydroxymethyltransferase n=2 Tax=Rhodosorus... [more]
A0A7J7IHC2_9RHOD7.480e-4147.51Serine hydroxymethyltransferase n=1 Tax=Cyanidioco... [more]
M1V536_CYAM12.760e-3853.19Serine hydroxymethyltransferase n=1 Tax=Cyanidiosc... [more]
J3N865_ORYBR3.540e-3851.75Serine hydroxymethyltransferase n=6 Tax=Oryzeae Ta... [more]
A0A3B4WY20_SERLL3.590e-3749.25Glycine hydroxymethyltransferase n=1 Tax=Seriola l... [more]
W6KY12_9TRYP5.540e-3750.00Serine hydroxymethyltransferase n=1 Tax=Phytomonas... [more]
A0A843VN40_COLES6.210e-3750.00Serine hydroxymethyltransferase n=1 Tax=Colocasia ... [more]
A0A1J3JL29_NOCCA7.730e-3749.29Glycine hydroxymethyltransferase (Fragment) n=1 Ta... [more]
A0A7S0H3N8_9EUKA8.680e-3750.34Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 87..107
e-value: 2.3E-37
score: 130.2
IPR039429Serine hydroxymethyltransferase-like domainPFAMPF00464SHMTcoord: 80..217
e-value: 1.1E-34
score: 119.8
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3D3.40.640.10coord: 108..218
e-value: 2.3E-37
score: 130.2
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 71..218
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 68..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5820996..5831233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12508.t1Gvermi12508.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 5820996..5831233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12508.t1 ID=Gvermi12508.t1|Name=Gvermi12508.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=219bp
MALANYSYTTRRVTAWEVYSATRWDQTEFEFAKTLFASTSGCGNIFPTPP
LMSVYPVNLDKTIRAQVRVRWPLTDNTPLSQQAAQTHRLLQQKKSGKRRI
LEPIAPENVTSAVVLYYLRTVFINKYSQGCPGERYYCGKHVVPQVQHMCR
DCALAAFYLDPSLLAVNLQPYSVSVANFTSYTTLFNPHDCIMGQEVPSGG
HLSHVFYTPKRRVSVTSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015422PyrdxlP-dep_Trfase_small
IPR039429SHMT-like_dom
IPR015421PyrdxlP-dep_Trfase_major
IPR001085Ser_HO-MeTrfase
IPR015424PyrdxlP-dep_Trfase