Gvermi12493.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12493.t1
Unique NameGvermi12493.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Homology
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A2V3IQ26_9FLOR (Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ26_9FLOR)

HSP 1 Score: 447 bits (1150), Expect = 1.450e-154
Identity = 219/319 (68.65%), Postives = 257/319 (80.56%), Query Frame = 0
Query:   14 ILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLCPEPECANIDCAKCGQILECYVNSGFPNLDQAVCDVVSDQSQFCTTRGGDGTACLQQCKGRFGVACFTEESFGSCPQMIGSDPKCKGGAARNRPADLSNFASYTVCVRADGTVEVSCLNDKCESGSSCSCAQPF 332
            +L+  + Q SC PLNVCFAIDESGSI  T+F +QT+A++AIAQ L++FAPGSTLSAVGFS+ AE++QSPTTDIN  F+ AIQ N Q+G +TSSG+ L LC++ I SAADPRII+LLTDG DN  P GTSVA  IKN GI I T+GIG+G++  SL+SIASSPDLF FVD FS+F   +E IV+++CP PEC N DCAKCGQ+LECYVNSGF + D+AVCDVV+D SQFCTTR GDGTAC QQCKGR GV CF   SFGSCPQ IGSD KC GGA + R ADLSNFASYTVC+  +G VEVSCL+ KCESGS CSCA PF
Sbjct:   64 LLRITSAQRSCPPLNVCFAIDESGSISPTDFIEQTEAIVAIAQELSTFAPGSTLSAVGFSSFAELIQSPTTDINGEFVQAIQGNSQLGGTTSSGAALQLCQTQIASAADPRIIVLLTDGADNTMPFGTSVAGGIKNNGIIIITIGIGSGINAPSLRSIASSPDLFIFVDDFSSFEDSIEVIVDTICPVPECVNFDCAKCGQVLECYVNSGFVSADEAVCDVVNDASQFCTTRRGDGTACQQQCKGRQGVQCFPGTSFGSCPQRIGSDAKCMGGAGKGRRADLSNFASYTVCISRNGRVEVSCLSQKCESGSHCSCASPF 382          
BLAST of Gvermi12493.t1 vs. uniprot
Match: Q7XZ43_GRIJA (Alpha 1 type VII collagen (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ43_GRIJA)

HSP 1 Score: 137 bits (344), Expect = 1.400e-35
Identity = 79/169 (46.75%), Postives = 106/169 (62.72%), Query Frame = 0
Query:   24 CLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTLSAVGFSN------TAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQ-SIASSPDLFTFVDSFS 185
            C P  +C+AIDES SI  TEF Q   AL+ I    ++ APGS+ +AV FS         EVV   T+D+   F+ A+  NP+ G  TSSG+GL LC+  +   A P++ILL+TDG DN+ P G  V  AIK  G T+A VGIG+ ++   L+ +I+SSPDL+TFVD FS
Sbjct:   25 CPPAKICYAIDESESISGTEFAQLNAALVEITNTFSTAAPGSSFAAVDFSGLQNGGGVGEVVSPLTSDVTT-FLAALAANPKRGGFTSSGTGLNLCDQELDGQAQPKVILLITDGVDNRNPIGVDVEAAIKANGNTVAVVGIGDNLNDDDLRDTISSSPDLYTFVDDFS 192          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A2V3IFK7_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFK7_9FLOR)

HSP 1 Score: 131 bits (329), Expect = 1.610e-31
Identity = 67/180 (37.22%), Postives = 112/180 (62.22%), Query Frame = 0
Query:   20 TQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLC 199
            T   C   +VCF +DESGSI S+E+  +   +I+++++++S   G+  SA GF+++A V+Q+ T+++   F+P I  + Q G ST+  +GL  C + +   A  R+I+L+TDG DN  P   ++AP +K AG+ I T+G+G+GVD   L+S+A++P  F    +FS+    V  + ES C
Sbjct:   33 TSEDCSINSVCFVLDESGSIQSSEYIVEQQFVISVSRVISSRTNGTLYSAYGFASSASVIQASTSNLEGTFVPVINQSQQSGGSTNMYAGLNACFNEVNGNAGNRVIVLITDGGDNGNPLAEALAPTVKAAGVAIVTIGVGSGVDEDYLRSLATTPAFF-IPSTFSSLPADVVRVAESSC 211          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A2V3J5W6_9FLOR (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5W6_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 1.740e-27
Identity = 74/196 (37.76%), Postives = 117/196 (59.69%), Query Frame = 0
Query:   13 VILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLC------PEP 202
            V+ Q+ +++ +C   +VCFA+D+SGSI    +    + +I +A+ + S + G+  SA GFSN+   +Q+ T+ +  +F+PA+  +     ST+  +GL  C + I      ++I+LLTDGQDN  P  +S+AP IK+AGITI TVGIG GV    L+ +AS+PD F  +  FST  ++V  + +  C      PEP
Sbjct:   22 VVRQDDSSEETCPIDSVCFAMDQSGSI-FLNYGAIQNFVIEVAREIESRSFGTLFSAYGFSNSVTTIQTSTSQLETLFVPAVTASGPPSGSTNMYAGLNGCFNDIADQPGNKVIILLTDGQDNAFPLASSLAPVIKDAGITIVTVGIGAGVSAPYLEQLASTPDFFIQL-MFSTLPSEVVSLSQMTCDAVDASPEP 215          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A2V3IGK2_9FLOR (Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK2_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 8.010e-21
Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = 0
Query:   14 ILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIA-QLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQ--DNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLCPEPECANIDCAK 211
            +L +   +  C   NVC+ +D+S S+ ++++D++ D +I IA Q+    A     SAV FS  AEV+Q PT D+N  F+ A+    Q    T   + L+ C+ L+  A   + I+L+TDG    N+  +  ++A  IK+ G  I TVG+G+ +D A L+ IAS PDLF    SF      + ++V  +C +      DC+K
Sbjct:   18 VLGQPPVEKPCRIDNVCYLLDQSDSVTTSQYDKEKDFVIKIARQVELKSASDPFNSAVAFSTDAEVIQDPTRDLNK-FVNAVNGPRQFFEGTKFSTALSECQELLEDAEGSKAIVLITDGGFFGNEGQNAEAIAAEIKDEGTFIVTVGVGSLIDEAFLRRIAS-PDLFVGT-SFDNLDEVIMQVVSDICVD--IIETDCSK 213          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A7S1THZ2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THZ2_9RHOD)

HSP 1 Score: 95.1 bits (235), Expect = 1.760e-19
Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 0
Query:    6 AALLLLCVILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTLS----AVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIG-NGVDTASLQSIASSPDLFTFVDSFS 185
            A +LLL V +    T   C   N+CFAIDESGSID+TEF  +++A+  IA  + S +    ++    A GFS+  +++ SP   + ++ + AI  N Q   +T +G+ L  C +L+ SA+  R+++L+TDG     P     A AIK   I + TVG+G      A L+S++S P  +   D+F+
Sbjct:   35 ACVLLLWVSVAVVVTAQPCAVNNICFAIDESGSIDATEFQTESNAVGTIATRIDSISSSVGITTKYGAYGFSDRVKLI-SPLAQLPSL-LAAITANTQTPGATYTGAALTSCRTLLSSASGVRVVVLVTDGVPTDDPG--PAAAAIKANNIKLVTVGVGVTATAEALLKSLSSGPGFYVNADNFT 215          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A7S1XDR4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDR4_9RHOD)

HSP 1 Score: 93.6 bits (231), Expect = 2.890e-18
Identity = 69/197 (35.03%), Postives = 101/197 (51.27%), Query Frame = 0
Query:   15 LQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTSFAPGSTL----SAVGFSNTAEVVQSPTTDINAVFIPAIQNNP-QVGLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNAGIT-IATVGIGNGVDTAS-LQSIASSPDLFTFVDSFSTFITKVEEIVESLCPEPEC 204
            L   A    C   N+CFAIDESGSI  + F  +T+ ++ +A+ L   +    +    +A+ F  +   V S  TD+ A F   + NNP +    T        C SL+  A+  R I+L+TDG  +   +    A A+K+   T I TVG+G     AS LQS+AS PD F    SFS    K E++V+++CP P+C
Sbjct:   24 LWALAYSQPCTINNICFAIDESGSISDSAFVDETNVVLQVARALDMISKMQGIQTKYAAIDFGASESTVSS-LTDV-ASFEQRVSNNPHRKDPDTLYAPAFERCGSLLSGASGVRAIVLVTDGAPSDTTAAIVAANALKSMPNTFIITVGVGLTSSRASFLQSLASGPDFFAEASSFSAL--KFEKVVQAICPPPKC 216          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A1D3DZF4_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces thermolilacinus SPC6 TaxID=1306406 RepID=A0A1D3DZF4_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 2.640e-15
Identity = 67/191 (35.08%), Postives = 104/191 (54.45%), Query Frame = 0
Query:   17 EAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTS---FAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADP---RIILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSP---DLFTFVDSFSTFITKVEEIVESL 198
            E++TQ++  P ++   +DESGSI+ TEF Q TD   ++   +     FA G  +  VGFS TA+ V   + D  AV   AI NN Q+  ST    GL      +G   DP   ++++++TDG  N      S A A++    T+  VG+G+GV  A+L+++AS P   + FT V SF      +E++VE++
Sbjct:   57 ESSTQST--PTDLVLVLDESGSINDTEFGQLTDFADSVVAAVADDGLFANGGRVGVVGFSQTAQDVSPLSADEGAVR-SAIVNNTQMRSSTCISCGLDRAGVQLGPD-DPLRNQVVIVITDGNANPGDPTASAAAALQGKA-TVFAVGVGDGVSQATLETVASGPGSDNTFT-VGSFDDLADLLEKLVEAV 241          
BLAST of Gvermi12493.t1 vs. uniprot
Match: A0A543PP74_9MICO (von Willebrand factor type A domain-containing protein n=1 Tax=Humibacillus xanthopallidus TaxID=412689 RepID=A0A543PP74_9MICO)

HSP 1 Score: 85.9 bits (211), Expect = 8.690e-15
Identity = 69/192 (35.94%), Postives = 104/192 (54.17%), Query Frame = 0
Query:   17 EAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTS---FAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADP---RIILLLTDGQDNQAPSGTSVAPAIKN--AGITIATVGIGNGVDTASLQSIASSP--DLFTFVDSFSTFITKVEEIVESL 198
            E++TQ++  P ++   +DESGSIDSTEF Q      A+ + + +   FA G  +  VGFS  AEVV SP +        AI  NPQ G ST    GL    +++G A DP   ++++++TDG    A SG   A A  N  A   +  VG+G+G+  ++L++IAS P  D    V  FS+  T +  +V ++
Sbjct:   67 ESSTQST--PTDLVLVLDESGSIDSTEFGQLKSFADAVVEAVGNDGLFANGGRVGVVGFSTGAEVV-SPLSGNETDVRNAIAANPQSGGSTCMSCGLNEASTVMG-ADDPARNQLVIVITDGN---ATSGDPTASAAANLQAKAEVFAVGVGDGISQSTLETIASGPGADNTFSVGGFSSLATLLSALVSAV 251          
BLAST of Gvermi12493.t1 vs. uniprot
Match: UPI001674109F (PKD domain-containing protein n=1 Tax=Streptomyces roseolilacinus TaxID=66904 RepID=UPI001674109F)

HSP 1 Score: 84.0 bits (206), Expect = 3.610e-14
Identity = 64/190 (33.68%), Postives = 100/190 (52.63%), Query Frame = 0
Query:   17 EAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDALIAIAQLLTS---FAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQVGLSTSSGSGLALCESLIGSAADPR--IILLLTDGQDNQAPSGTSVAPAIKNAGITIATVGIGNGVDTASLQSIASSP---DLFTFVDSFSTFITKVEEIVESL 198
            E++TQ++  P ++   +DESGS++ TEFDQ TD    +   +     FA G  +  VGFS+ AE V   + D  AV   AI NNPQ+  +T    GL      +G     R   ++++TDG  N      S A A++    T+  VG+G+GV  A+L+++AS P   + FT   SF      +E++V ++
Sbjct:    8 ESSTQST--PTDLVLVLDESGSVNDTEFDQLTDFADGVVAAVADDGLFANGGRVGVVGFSHVAEDVIPLSGDEGAVR-SAIANNPQLRNNTCISCGLDRAGVQLGPDDPQRNQAVIVITDGNANPGDPTASAAAALQGKA-TVFAVGVGDGVSQATLETVASGPGADNTFT-AGSFDDLAALLEKLVAAV 192          
The following BLAST results are available for this feature:
BLAST of Gvermi12493.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ26_9FLOR1.450e-15468.65Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
Q7XZ43_GRIJA1.400e-3546.75Alpha 1 type VII collagen (Fragment) n=1 Tax=Griff... [more]
A0A2V3IFK7_9FLOR1.610e-3137.22Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3J5W6_9FLOR1.740e-2737.76Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis... [more]
A0A2V3IGK2_9FLOR8.010e-2133.83Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariop... [more]
A0A7S1THZ2_9RHOD1.760e-1935.14Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S1XDR4_9RHOD2.890e-1835.03Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A1D3DZF4_9ACTN2.640e-1535.08Uncharacterized protein n=1 Tax=Streptomyces therm... [more]
A0A543PP74_9MICO8.690e-1535.94von Willebrand factor type A domain-containing pro... [more]
UPI001674109F3.610e-1433.68PKD domain-containing protein n=1 Tax=Streptomyces... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 26..199
e-value: 1.8E-20
score: 84.0
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 28..186
e-value: 5.7E-23
score: 82.1
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 28..198
score: 17.050518
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 21..205
e-value: 5.1E-33
score: 116.6
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 14..201
NoneNo IPR availablePANTHERPTHR22588UNCHARACTERIZEDcoord: 16..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..333
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableCDDcd00198vWFAcoord: 27..181
e-value: 4.50134E-24
score: 94.5549

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5437902..5438903 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1Gvermi12493.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 5437902..5438903 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MNSIFAALLLLCVILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDA
LIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQV
GLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNA
GITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLCP
EPECANIDCAKCGQILECYVNSGFPNLDQAVCDVVSDQSQFCTTRGGDGT
ACLQQCKGRFGVACFTEESFGSCPQMIGSDPKCKGGAARNRPADLSNFAS
YTVCVRADGTVEVSCLNDKCESGSSCSCAQPFE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf