Gvermi12470.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12470.t1
Unique NameGvermi12470.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Homology
BLAST of Gvermi12470.t1 vs. uniprot
Match: R7QR91_CHOCR (D-aminoacyl-tRNA deacylase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR91_CHOCR)

HSP 1 Score: 167 bits (424), Expect = 2.650e-50
Identity = 90/166 (54.22%), Postives = 110/166 (66.27%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARN----AHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRP-VDRAGAAVRSGVFGARMQLQLVNDGPYTICLTATDGRCQPW 161
            MRLVVQKVSQAAVTS  +     T+ I  G C LVGFE++DT  D  + ++QLLKLR+F +  +        A N+     D+LLVSQFTLNA LKSGRPSFHRAM P  A PLF   ++ CR  +   G  V+SG+FG+ MQL LVNDGP+TICLT  DG+C  W
Sbjct:    1 MRLVVQKVSQAAVTSVAEGAAAETAEIGRGFCALVGFEKDDTISDCQSMSSQLLKLRIFPEAPSETGPGRVYAANLGDVQQDLLLVSQFTLNATLKSGRPSFHRAMGPTNAGPLFEEFIKLCREGLRERGCEVKSGIFGSYMQLHLVNDGPFTICLTCKDGKCSTW 166          
BLAST of Gvermi12470.t1 vs. uniprot
Match: A0A7N0UHV7_KALFE (D-aminoacyl-tRNA deacylase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UHV7_KALFE)

HSP 1 Score: 122 bits (305), Expect = 6.700e-32
Identity = 72/151 (47.68%), Postives = 92/151 (60.93%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR VVQ+V+ A    SV+ +  V S I  GL VLVG   +DT+ D D    ++L +RLFT+ AT+     NV+Q   +VLLVSQFTL   LK  +P FH AM P  A P +  +VER +   R  A V+ GVFGA MQ+ LVNDGP T+ L
Sbjct:   39 MRAVVQRVASA----SVEVEGRVVSRIGPGLLVLVGLHESDTESDADYMCRKVLNMRLFTNEATSKPWDQNVMQKSYEVLLVSQFTLYGVLKGNKPDFHVAMAPQKARPFYESIVERFKKSYREDA-VKDGVFGAMMQVSLVNDGPVTMQL 184          
BLAST of Gvermi12470.t1 vs. uniprot
Match: A0A6J0LYS3_RAPSA (D-aminoacyl-tRNA deacylase n=11 Tax=Brassiceae TaxID=981071 RepID=A0A6J0LYS3_RAPSA)

HSP 1 Score: 120 bits (302), Expect = 2.600e-31
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR V+Q+VS    +SSV     + S I  GL VL+G   +DTD D D    ++L +RLFT+  T      NV+Q G  VLLVSQFTL   LK  +P FH AMPP  A P +  LVER +      A V+ GVFGA M++ LVNDGP T+ L
Sbjct:   49 MRAVIQRVS----SSSVTVDGRIVSEIGPGLLVLIGIHESDTDADADYICRKVLNMRLFTNETTGRGWDQNVMQRGYGVLLVSQFTLYGFLKGNKPDFHVAMPPEKAKPFYASLVERFQKAYNPDA-VKDGVFGAMMKVNLVNDGPVTMQL 194          
BLAST of Gvermi12470.t1 vs. uniprot
Match: A0A059C8H7_EUCGR (D-aminoacyl-tRNA deacylase n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059C8H7_EUCGR)

HSP 1 Score: 120 bits (300), Expect = 4.100e-31
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR VVQ+V+ A    SV+ +    S I  GL VLVG   +DTD D D    ++L +RLFT+ +T      NV+Q    VLLVSQFTL   LK  +P FH AMPP  A P +  LVER R      A V+ G+FGA M++ LVNDGP T+ L
Sbjct:   35 MRAVVQRVASA----SVEVEGRTVSEIGPGLLVLVGIHDSDTDSDADYICRKVLNMRLFTNESTGRGWDQNVMQKNYGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYESLVERFRKTYSPDA-VKDGIFGAMMKVNLVNDGPVTMQL 180          
BLAST of Gvermi12470.t1 vs. uniprot
Match: UPI0011D2135A (D-aminoacyl-tRNA deacylase n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2135A)

HSP 1 Score: 119 bits (298), Expect = 8.630e-31
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR VVQ+V+ A    SV+ +    S I  GL VLVG   +DTD D D    ++L +RLFT+ +T      NV+Q    VLLVSQFTL   LK  +P FH AMPP  A P +  LVER +      A V+ GVFGA M++ LVNDGP T+ L
Sbjct:   40 MRAVVQRVASA----SVEVEGRTVSEIGPGLLVLVGIHESDTDSDADYICRKVLNMRLFTNESTGRGWDQNVMQKNYGVLLVSQFTLYGFLKGNKPDFHVAMPPQKAKPFYESLVERFQKAYSPDA-VKDGVFGAMMKVNLVNDGPVTMQL 185          
BLAST of Gvermi12470.t1 vs. uniprot
Match: M1AQ86_SOLTU (D-aminoacyl-tRNA deacylase n=13 Tax=Solanaceae TaxID=4070 RepID=M1AQ86_SOLTU)

HSP 1 Score: 117 bits (294), Expect = 8.740e-31
Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR VVQ+V+ A    SV+ +    S+I  GL VLVG   +D D D D    ++L +RLF +  T     H+V+Q   +VLLVSQFTL   LK  +P FH AMPP  A P +  LVE+ +   +  A V+ GVFGA+M++ LVNDGP T+ L
Sbjct:    1 MRAVVQRVASA----SVEVEGRTVSAIGPGLLVLVGLHESDVDSDADYICRKVLNMRLFPNEETGKTWDHSVVQKNYEVLLVSQFTLYGILKGNKPDFHVAMPPEKAKPFYASLVEKFQKAYKQDA-VKDGVFGAKMKVNLVNDGPVTMHL 146          
BLAST of Gvermi12470.t1 vs. uniprot
Match: D7MCR8_ARALL (D-aminoacyl-tRNA deacylase n=6 Tax=Camelineae TaxID=980083 RepID=D7MCR8_ARALL)

HSP 1 Score: 117 bits (292), Expect = 1.750e-30
Identity = 68/151 (45.03%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR V+Q+VS    +SSV     + S I  GL VL+G   +DTD D D    ++L +RLF++  T      NV+Q    +LLVSQFTL   LK  +P FH AMPP  A P +  LVE+ +      A V+ GVFGA MQ+ LVNDGP T+ L
Sbjct:    1 MRAVIQRVS----SSSVTVDGRIVSEIGPGLLVLIGIHESDTDSDADYICRKVLNMRLFSNETTGKGWDQNVMQRNYGILLVSQFTLYGFLKGNKPDFHVAMPPDKAKPFYASLVEKFQKAYNPDA-VKDGVFGAMMQVNLVNDGPVTMQL 146          
BLAST of Gvermi12470.t1 vs. uniprot
Match: A0A804K960_MUSAM (D-aminoacyl-tRNA deacylase n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K960_MUSAM)

HSP 1 Score: 115 bits (288), Expect = 9.580e-30
Identity = 69/154 (44.81%), Postives = 92/154 (59.74%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICLTAT 154
            MR VVQ+V    +++SV+ +  V S I  GL VLVG   +DTD D D    ++L +RLF++  T      +V Q+   VLLVSQFTL   LK  +P FH AMPP  A P +  LVE+ R       AV+ GVFGA M++ LVNDGP T+ L ++
Sbjct:    1 MRAVVQRV----LSASVEVEGRVVSEIGPGLLVLVGVHESDTDADADYICRKVLNMRLFSNSKTGKAWDLSVKQSNFGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYESLVEKFRK-SYTSDAVKDGVFGAMMKVNLVNDGPVTMQLDSS 149          
BLAST of Gvermi12470.t1 vs. uniprot
Match: A0A4D8ZHX2_SALSN (D-aminoacyl-tRNA deacylase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZHX2_SALSN)

HSP 1 Score: 116 bits (291), Expect = 1.080e-29
Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICLTAT 154
            MR VVQ+V+ A    SV+ +  + SSI  GL VLVG    D + D +    ++LK+RLF +  T      NV+Q   +VLLVSQFTL   LK  +P FH AMPP  A   +  LVER +   RA A V+ GVFGA M+++LVNDGP T+ L ++
Sbjct:   53 MRAVVQRVASA----SVEVEGRLISSIGQGLLVLVGLHEADVESDAEYICRKVLKMRLFPNEKTGTAWDQNVMQKNFEVLLVSQFTLYGVLKGNKPDFHVAMPPAAAKLFYASLVERFQKAYRADA-VKDGVFGAMMEVKLVNDGPVTMQLESS 201          
BLAST of Gvermi12470.t1 vs. uniprot
Match: UPI000B794ED3 (D-tyrosyl-tRNA(Tyr) deacylase-like isoform X1 n=6 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B794ED3)

HSP 1 Score: 116 bits (291), Expect = 1.130e-29
Identity = 69/151 (45.70%), Postives = 87/151 (57.62%), Query Frame = 0
Query:    1 MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAAAQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHRAMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTICL 151
            MR VVQ+V+ A    SV+ +  V S I  GL V VG   +DTD D D    ++L +RLF +  T      NV+Q    VLLVSQFTL   LK  +P FH AMPP  A P +  LVE+ R   R  A ++ GVFGA M++ L NDGP T+ L
Sbjct:   49 MRAVVQRVTSA----SVEVEGRVVSDIGPGLLVFVGLHESDTDSDADYICRKVLNMRLFPNETTGRGWDQNVMQKNYGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVEKFRKSYRPDA-IKDGVFGAMMKVNLANDGPVTMQL 194          
The following BLAST results are available for this feature:
BLAST of Gvermi12470.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QR91_CHOCR2.650e-5054.22D-aminoacyl-tRNA deacylase n=1 Tax=Chondrus crispu... [more]
A0A7N0UHV7_KALFE6.700e-3247.68D-aminoacyl-tRNA deacylase n=1 Tax=Kalanchoe fedts... [more]
A0A6J0LYS3_RAPSA2.600e-3147.02D-aminoacyl-tRNA deacylase n=11 Tax=Brassiceae Tax... [more]
A0A059C8H7_EUCGR4.100e-3147.02D-aminoacyl-tRNA deacylase n=4 Tax=Myrtoideae TaxI... [more]
UPI0011D2135A8.630e-3147.02D-aminoacyl-tRNA deacylase n=1 Tax=Syzygium oleosu... [more]
M1AQ86_SOLTU8.740e-3145.03D-aminoacyl-tRNA deacylase n=13 Tax=Solanaceae Tax... [more]
D7MCR8_ARALL1.750e-3045.03D-aminoacyl-tRNA deacylase n=6 Tax=Camelineae TaxI... [more]
A0A804K960_MUSAM9.580e-3044.81D-aminoacyl-tRNA deacylase n=1 Tax=Musa acuminata ... [more]
A0A4D8ZHX2_SALSN1.080e-2945.45D-aminoacyl-tRNA deacylase n=1 Tax=Salvia splenden... [more]
UPI000B794ED31.130e-2945.70D-tyrosyl-tRNA(Tyr) deacylase-like isoform X1 n=6 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003732D-aminoacyl-tRNA deacylase DTDTIGRFAMTIGR00256TIGR00256coord: 1..152
e-value: 5.0E-37
score: 125.6
IPR003732D-aminoacyl-tRNA deacylase DTDPFAMPF02580Tyr_Deacylasecoord: 2..151
e-value: 4.1E-43
score: 147.3
IPR003732D-aminoacyl-tRNA deacylase DTDPANTHERPTHR10472D-TYROSYL-TRNA TYR DEACYLASEcoord: 1..153
IPR023509D-aminoacyl-tRNA deacylase-like superfamilyGENE3D3.50.80.10coord: 1..152
e-value: 1.6E-47
score: 163.9
IPR023509D-aminoacyl-tRNA deacylase-like superfamilySUPERFAMILY69500DTD-likecoord: 1..151
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4957958..4958443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12470.t1Gvermi12470.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4957958..4958443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12470.t1 ID=Gvermi12470.t1|Name=Gvermi12470.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MRLVVQKVSQAAVTSSVDAQPTVTSSIHAGLCVLVGFERNDTDHDVDAAA
AQLLKLRLFTDPATNARNAHNVLQAGADVLLVSQFTLNAALKSGRPSFHR
AMPPHLAAPLFHRLVERCRPVDRAGAAVRSGVFGARMQLQLVNDGPYTIC
LTATDGRCQPW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003732Daa-tRNA_deacyls_DTD
IPR023509DTD-like_sf