Gvermi12468.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12468.t1
Unique NameGvermi12468.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Homology
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BLAST of Gvermi12468.t1 vs. uniprot
Match: A0A2V3IEU7_9FLOR (5'-AMP-activated protein kinase subunit gamma-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU7_9FLOR)

HSP 1 Score: 245 bits (625), Expect = 3.670e-77
Identity = 151/267 (56.55%), Postives = 189/267 (70.79%), Query Frame = 0 
Query:    1 LATHAVHRLVPAQSRVLIVDARVDALSALRSLGDNDVRAAAVLHDGELRAMLTLATALHAAAQPALLRAPLRELLARAAAQPLARVSADAPQLAAARLLARSGAPPLAVMHRGEPLHWLLAERLVALLQPRFRRAAWLRLSVRAARVGRFHHVLSAAPRMRVDLAARLMLERRLDSLPVVAADGAVVGVLDAELLGAAVVAAXXXAAPLPAAHVGAFMHRARVCSRDDSLRHVLAMLRDGCRRVFVLEHRRVV-GVIGLRHLLRFLL 266
            L++HAVH LVPA SRVLIVDA +    A R+LG+NDVRAAAVLH+G L  MLTL +ALH A    LL  PL   + ++A QP   VSADA QL AARLL+++G+PPLAVMH  E LHWL AERL+ALL+PRFR A +LR S+ + ++GR+  +++A  RMRV+ AAR+M+ R LDSLPV A  G VVGVLD E++GAA  A            V AFM +  VC+R+++L  V+  LRDG RRVFV + +RVV GVIGL HLLRF L
Sbjct:   41 LSSHAVHELVPAHSRVLIVDANICTQHAFRALGENDVRAAAVLHNGSLCGMLTLTSALHVACDSQLLSRPLYTFVQQSAVQPFISVSADAAQLHAARLLSQTGSPPLAVMHGSEALHWLFAERLLALLEPRFRDAPFLRYSIGSLQLGRYTDLVTADMRMRVEDAARVMISRGLDSLPVTAG-GRVVGVLDGEVVGAAAAAGGIGG------EVCAFMQQGAVCAREEALGSVIGKLRDGWRRVFVADEQRVVIGVIGLGHLLRFFL 300
The following BLAST results are available for this feature:
BLAST of Gvermi12468.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IEU7_9FLOR3.670e-7756.555'-AMP-activated protein kinase subunit gamma-2 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainSMARTSM00116cbs_1coord: 152..200
e-value: 1.6
score: 16.8
coord: 220..266
e-value: 0.0026
score: 27.0
coord: 15..62
e-value: 2.2
score: 15.6
coord: 82..129
e-value: 81.0
score: 1.6
IPR000644CBS domainPFAMPF00571CBScoord: 214..266
e-value: 1.6E-7
score: 31.7
NoneNo IPR availableGENE3D3.10.580.10coord: 134..267
e-value: 2.4E-15
score: 58.4
NoneNo IPR availableCDDcd02205CBS_pair_SFcoord: 151..263
e-value: 3.81472E-11
score: 56.8691
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 151..266
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 5..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4952012..4952936 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12468.t1Gvermi12468.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4952012..4952936 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12468.t1 ID=Gvermi12468.t1|Name=Gvermi12468.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
LATHAVHRLVPAQSRVLIVDARVDALSALRSLGDNDVRAAAVLHDGELRA
MLTLATALHAAAQPALLRAPLRELLARAAAQPLARVSADAPQLAAARLLA
RSGAPPLAVMHRGEPLHWLLAERLVALLQPRFRRAAWLRLSVRAARVGRF
HHVLSAAPRMRVDLAARLMLERRLDSLPVVAADGAVVGVLDAELLGAAVV
AAAAAAAPLPAAHVGAFMHRARVCSRDDSLRHVLAMLRDGCRRVFVLEHR
RVVGVIGLRHLLRFLLPPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom