Gvermi12437.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12437.t1
Unique NameGvermi12437.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length459
Homology
BLAST of Gvermi12437.t1 vs. uniprot
Match: A0A2V3ITA9_9FLOR (Protein sel-1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITA9_9FLOR)

HSP 1 Score: 441 bits (1134), Expect = 2.760e-148
Identity = 232/454 (51.10%), Postives = 305/454 (67.18%), Query Frame = 0
Query:    1 LAKLLRAAPIRFTLALACDYPALVLDSVLHMNLSQDTLVHFARQLQYGPVGRRGYRTASRYVALGLLHRVICRSPHNAHAQCLMGEILLPFVNYGQNGLYVPRSVLAQALACFEAAADIPLGLFLKGRLLLTMESVHKDSAKAALGKQLVHKAADLGCARALVFLAHRYEYPQLDLAVSFASDVPKDRDSRERHIVSLYRKAAEANDPDALNDLGTSYAQEYGGLQGDFDTVVQYYLRAITAGSLHAFDNLGTHYETGMGMRFPGRVDYGMALFYYRQGARKXXXXXXXXXXXXXXXXXGDTLSRDLYRAEKYYWIALRLGSDCSDLQTSARTVHDLCALYATKIKVGNPGDEETVRCERKLRQVLPSDAGADELMSKVNRGICQIIQRRSTSMTIKVVGEENARLIAKRVRSVWKNTDNMPEDEREAILQHLTGGDFVEDTTPPRKKRATLKR 454
            L+KL+   P++ TL +ACD P   L S+L MNL    L+ FARQL++GP GR G R A RY+AL +L  V+   P N HA CL GE+LLP V+YG+N    P SVL +AL+CFEAA+  P GLFLKGRLLLTME++HKD  K+ +GK  V KAA  GC RA VFLAHRYEYPQLD +VSFASDVP+DRD RER IV LY++AAEANDPD LNDLGTSYA+ YGGLQ DFD V                            MRFP R+DY  ALFYY+QG+++       XXXXXXXXXX D L +DL RA+++Y + L+L +DC+DLQT+ R V DL +L  T IK+ +PG ++  +CE+ L  ++PS+   DE + +VN+ + Q +++RS    ++++GEEN+RL  KR + VW N + +P+ ++EA L+H+ G    +   PPRKKR T +R
Sbjct:   50 LSKLINHFPLQLTLPIACDAPDFYLRSILRMNLPPPLLIEFARQLEFGPCGRVGERPAQRYLALCILSHVLQEHPKNIHALCLKGELLLPVVHYGRNYPTTPLSVLEEALSCFEAASHDPTGLFLKGRLLLTMEAIHKDVDKSKMGKACVLKAARCGCGRASVFLAHRYEYPQLDQSVSFASDVPRDRDERERFIVDLYKQAAEANDPDGLNDLGTSYAEGYGGLQPDFDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRFPDRIDYVRALFYYKQGSQRGCPKCAYXXXXXXXXXXXDVLPKDLTRAKRFYMLCLKLCNDCNDLQTAGRAVSDLMSLLVTTIKLEDPGSQKARKCEKLLGTIIPSNESGDEYLERVNKALLQAVRKRSKRTLVRMLGEENSRLAFKRAKEVWNNNEGLPDADQEAALEHMFGNHAFQSPEPPRKKRNTSRR 503          
BLAST of Gvermi12437.t1 vs. uniprot
Match: R7Q7Q9_CHOCR (Sel1-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q9_CHOCR)

HSP 1 Score: 308 bits (789), Expect = 5.610e-96
Identity = 171/407 (42.01%), Postives = 238/407 (58.48%), Query Frame = 0
Query:   32 NLSQDTLVHFARQLQYGPVGRRGYRTASRYVALGLLHRVICRSPHNAHAQCLMGEILLPFVNYGQNGLYVPRSVLAQALACFEAAADIP--LGLFLKGRLLLTMESVHKDSAKAALGKQLVHKAADLGCARALVFLAHRYEYPQLDLAVSFASDVPKDRDSRERHIVSLYRKAAEANDPDALNDLGTSYAQEYGGLQGDFDTVVQYYLRAITAGSLHAFDNLGTHYETGMGMRFPGRVDYGMALFYYRQGARKXXXXXXXXXXXXXXXXXGDTLSRDLYRAEKYYWIALRLGSDCSDLQTSARTVHDLCALYATKIKVGNPGDEETVRCERKLRQVLPSDAGADELMSKVNRGICQIIQRRSTSMTIKVVGEENARLIAKRVRSVWKNTDNMPEDEREA-ILQHLTG 435
            N   D+L+   R     PVGR G R + R V + L   ++ R P+N HA CL GE L+   +YG+N  Y PRSV+ +A   F+ A+ +      FLKGR LLTME +H+++ +A LG   V  AA   C RALVFLAHRYE PQLD + SFASD+PK +  +ER I+  Y+KAAE  + DA+NDLGTSYA+ YG L+ DFD  V+ Y+  I AGSLHA+DN+GTHYETGM  RFPGR+  G AL+YYR GA++                   T+S +  +AE YY  A+RL  D +D    A+   DL ALY T+IKV  P   +     R+L  V+  +    + + +VN+ I   ++ + T+++ K+VG+ N + I K  ++V +        E  A +L H+ G
Sbjct:   88 NAPTDSLIELIRVCFDAPVGRVGDRQSVRTVGVLLCDELLRRDPNNVHALCLKGEALVSCAHYGKNDPYAPRSVMQEAYELFDTASKLGSHTATFLKGRWLLTMEPLHRNAEQAHLGVTCVKAAARELCPRALVFLAHRYETPQLDSSFSFASDLPKGKAQKERFILGYYKKAAELGNADAINDLGTSYAEGYGNLECDFDKAVEQYILGIEAGSLHAYDNVGTHYETGMAGRFPGRIHLGKALYYYRLGAKQRCPKCTYNLAVAYDEGMSGTVSMNNKKAENYYIHAIRLAEDSNDAVVVAKAAKDLVALYITRIKVNRPDSIQVTSARRRLFSVVGDEDIIQQTLLQVNKSIATAMRGKITALS-KLVGDMNCKTIVKHAKAVDQMVKRDKASETNAKLLFHILG 493          
The following BLAST results are available for this feature:
BLAST of Gvermi12437.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITA9_9FLOR2.760e-14851.10Protein sel-1-like n=1 Tax=Gracilariopsis chorda T... [more]
R7Q7Q9_CHOCR5.610e-9642.01Sel1-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 208..244
e-value: 24.0
score: 10.3
coord: 285..322
e-value: 1.1
score: 18.3
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 250..283
e-value: 0.76
score: 10.6
coord: 208..243
e-value: 9.0
score: 7.2
coord: 96..118
e-value: 4.4
score: 8.2
coord: 286..321
e-value: 0.24
score: 12.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 66..354
e-value: 2.8E-31
score: 110.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 435..458
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 243..343
coord: 103..262
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 243..343
coord: 103..262
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 196..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4742077..4743453 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12437.t1Gvermi12437.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4742077..4743453 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12437.t1 ID=Gvermi12437.t1|Name=Gvermi12437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=459bp
LAKLLRAAPIRFTLALACDYPALVLDSVLHMNLSQDTLVHFARQLQYGPV
GRRGYRTASRYVALGLLHRVICRSPHNAHAQCLMGEILLPFVNYGQNGLY
VPRSVLAQALACFEAAADIPLGLFLKGRLLLTMESVHKDSAKAALGKQLV
HKAADLGCARALVFLAHRYEYPQLDLAVSFASDVPKDRDSRERHIVSLYR
KAAEANDPDALNDLGTSYAQEYGGLQGDFDTVVQYYLRAITAGSLHAFDN
LGTHYETGMGMRFPGRVDYGMALFYYRQGARKGCPKCAYNLGAAYEEGMG
DTLSRDLYRAEKYYWIALRLGSDCSDLQTSARTVHDLCALYATKIKVGNP
GDEETVRCERKLRQVLPSDAGADELMSKVNRGICQIIQRRSTSMTIKVVG
EENARLIAKRVRSVWKNTDNMPEDEREAILQHLTGGDFVEDTTPPRKKRA
TLKRKAKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf