Gvermi12432.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12432.t1
Unique NameGvermi12432.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Homology
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A2V3IIS9_9FLOR (tRNA pseudouridine(55) synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIS9_9FLOR)

HSP 1 Score: 216 bits (550), Expect = 3.110e-65
Identity = 106/175 (60.57%), Postives = 135/175 (77.14%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEISQKS 175
            MLGGGRPF+++L  +A+VP L+   +L  +AA L   VVR+H L VV  SY  +MR+YEA+K+KHYRCV+YT G+LD++ L+ L ++ + + Q+TPLRVLHRRTQ  R K I    V R++N HFV+LDVVAQAGTYIKEFVHGD+GRT PS+ASLL CF DIVQLDVT+IS  S
Sbjct:  311 MLGGGRPFIVQLHQSAVVPCLISQRLLDHVAAELQHHVVRLHHLRVVDASYVHKMREYEADKQKHYRCVVYTTGILDQQALRKLQLRDLQLMQKTPLRVLHRRTQMTRPKRIARVDVVRLINPHFVVLDVVAQAGTYIKEFVHGDNGRTTPSIASLLHCFVDIVQLDVTDISHTS 485          
BLAST of Gvermi12432.t1 vs. uniprot
Match: R7QGX4_CHOCR (tRNA pseudouridine(55) synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGX4_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 6.520e-47
Identity = 93/176 (52.84%), Postives = 125/176 (71.02%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQR---IAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVL--DERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPFV+E+    IVP+L++  M++R   +AA++ + VV +    +V   YFA+MR +E EK+K YRCV++T   +  +E K +L       + Q+TPLRVLHRRTQAVR + IF   + RV++ +F ++DVVA AGTYIKEFVHGDHGRT P+VA LL C ADIVQLDVT+I
Sbjct:  301 MLGKGRPFVVEVINPKIVPALIEEEMVERMRALAASVSSSVV-IRDFRMVSKEYFAQMRSFEMEKKKCYRCVVWTRREVGSEELKDKLEVQGGFMLRQKTPLRVLHRRTQAVRERCIFEARLTRVVSPNFFVMDVVAAAGTYIKEFVHGDHGRTLPNVAQLLDCDADIVQLDVTDI 475          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A803RCD0_CANSA (tRNA pseudouridine(55) synthase n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A803RCD0_CANSA)

HSP 1 Score: 134 bits (337), Expect = 1.090e-36
Identity = 73/173 (42.20%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVL-DERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVM-NEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF++E+Q A  VPS+ D   ++++     + +V V  L  V +  +  MR+ E+EK+K Y  +++    L DE    + + + + + Q+TP+RVLHRR+   R K I    +E+V+ +  + LL +  QAGTYIKEFVHGD GRTHPS+ S+L C A+I+QLDVT++
Sbjct:    1 MLGSGRPFLIEIQNARHVPSVEDVKSIEKLINHSDSKLVGVKNLKTVDSQVWTLMREGESEKQKQYVALVWISRPLKDEDFESVCSFKELKVMQKTPIRVLHRRSPLEREKIIHWMKMEKVVGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILGCRAEILQLDVTDV 173          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A835UU65_VANPL (tRNA pseudouridine(55) synthase n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UU65_VANPL)

HSP 1 Score: 142 bits (359), Expect = 1.170e-36
Identity = 76/173 (43.93%), Postives = 116/173 (67.05%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIY-TEGVLDERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVM-NEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF++E+  A  +PS+VD   +     +     V+V  L +V +  +  MR+ EAEK+K Y  +++ +  VLDE  + + +++++ I+QRTP+RVLHRR+   R + I    +E+++ N HF LL +  QAGTYIKEFVHGD GRT+PS+ S+L+C A+I+QLDVT +
Sbjct:  405 MLGSGRPFLVEVSNARQLPSMVDVLQIAEKINSSDKGYVKVRNLEMVGSEVWNLMREGEAEKQKQYAALVWISRPVLDEDLMTISSIENMEISQRTPVRVLHRRSPLERKRIIHWMKIEKIVGNNHFFLLHLCTQAGTYIKEFVHGDLGRTYPSIGSILECRAEILQLDVTAV 577          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A8J5Y2V0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2V0_DIALT)

HSP 1 Score: 140 bits (353), Expect = 3.120e-36
Identity = 82/177 (46.33%), Postives = 117/177 (66.10%), Query Frame = 0
Query:    1 MLGGGRPFVLELQG-AAIVPSLVDAPMLQRIAAALH--ADVVRVHGLAVVPTSYFAEM-RQYEAEKRKHYRCVIYTEGVLDERKL--QLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPFV+E+Q  A + P       L  + AA++  ++ V+V  L VVP+S   ++ R+ E+E RK YRCV++    +  R++  +L     V + QRTP+RVLHRR    R +T++S   E ++N H+++LD+V Q+GTY+KEFVHGD GRTHP+V SLL C ADI+QLDV  I
Sbjct:  313 MLGSGRPFVIEMQEPACLEPGTAVGTPLAELEAAINLASEHVQVSQLRVVPSSSIGDLVREGESEHRKAYRCVVWLSRRVSAREVADKLDGAGEVLLEQRTPIRVLHRRPLLTRPRTVYSMRSE-LLNGHYLMLDLVTQSGTYVKEFVHGDFGRTHPNVGSLLGCSADILQLDVLSI 488          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A067D9A4_SAPPC (tRNA pseudouridine(55) synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9A4_SAPPC)

HSP 1 Score: 140 bits (352), Expect = 4.460e-36
Identity = 80/174 (45.98%), Postives = 115/174 (66.09%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGA--AIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLN-MQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF+LEL  A  A +P+ + A +  ++ AA + D+V +  L+      FA ++     KRK Y CV++T GVL   ++ +LN +  + + Q+TP+RVLHRRT   R K I   +VE ++N+H++LL +   AGTY+KEFVHGD GRT+P+VASLL C ADI+QLDV  +
Sbjct:  307 MLGNGRPFILELLDAKVATLPADMYATVQAQVNAA-NTDIVEIRELSSATKEGFAALQSGADSKRKTYCCVVWTSGVLTPERVAILNGICDLRVGQKTPVRVLHRRTLLTRPKVIHDASVE-LLNDHYMLLRLTTSAGTYVKEFVHGDLGRTYPNVASLLGCDADILQLDVENL 478          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A1Y1I146_KLENI (tRNA pseudouridine(55) synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I146_KLENI)

HSP 1 Score: 141 bits (355), Expect = 4.600e-36
Identity = 81/173 (46.82%), Postives = 109/173 (63.01%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLN-MQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVMNE-HFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPFVLELQ A ++P       +Q    +     V V  LA+V  S    +R+ EAEK+K Y  +++      +  +  LN M+ + + QRTP+RVLHRR+  +R +TI S   ERV  + H++LL +  QAGTY+KEFVHGD GRTHP+V S+L C ADI+QLDVT I
Sbjct:  414 MLGRGRPFVLELQNARVLPPPAAYAQMQAAVNSRPDKWVAVRDLALVDRSQVDLLREGEAEKQKEYAAIVWLPRPATQADVDKLNGMRDLVVQQRTPIRVLHRRSPLIRPRTIHSMRAERVAAKPHYLLLHLCTQAGTYVKEFVHGDLGRTHPNVGSILGCEADILQLDVTNI 586          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A2U1N9V5_ARTAN (tRNA pseudouridine(55) synthase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N9V5_ARTAN)

HSP 1 Score: 140 bits (352), Expect = 6.910e-36
Identity = 74/173 (42.77%), Postives = 115/173 (66.47%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIY-TEGVLDERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVM-NEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF++E+Q A  +PS V    +++   +L +++VRV  L V+    ++ MR+ EAEK+K Y  +++ +  + D+  L + +++ + + QRTP+RVLHRR+   R K I    +E +  +  + LL +  QAGTYIKEFVHGD GRTHPS+ S+L C A+I+QLDVT++
Sbjct:  352 MLGSGRPFLIEVQNARHIPSEVSVKEMEKKINSLESNLVRVKHLKVLDNQVWSLMREGEAEKQKQYAALVWISRDIKDDDLLAVSSLKDLKVLQRTPVRVLHRRSPLDREKIIHWMKIEEIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILGCRAEILQLDVTDV 524          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A2R6R3M5_ACTCC (tRNA pseudouridine(55) synthase n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6R3M5_ACTCC)

HSP 1 Score: 140 bits (353), Expect = 7.020e-36
Identity = 79/173 (45.66%), Postives = 113/173 (65.32%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLN-MQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVM-NEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF+LE+Q A  VPS V    ++R    L   +V+V  + VV +  +  MR+ EAEK+K Y  +++    L++  L+ L+ ++ + I Q+TP+RVLHRR+   R K I    +ER+  +  + LL +  QAGTY+KEFVHGD GRTHPSV SLL C A+I+QLDVT++
Sbjct:  388 MLGSGRPFLLEIQNARHVPSEVSIKEMERKVNNLENKLVKVKNVKVVGSQGWNLMREGEAEKQKQYAALVWISRPLEDDDLKTLSSLEDMPILQKTPIRVLHRRSPLEREKIIHWMRIERIAGSSQYCLLHLCTQAGTYVKEFVHGDLGRTHPSVGSLLGCRAEILQLDVTDV 560          
BLAST of Gvermi12432.t1 vs. uniprot
Match: A0A830B6H1_9LAMI (tRNA pseudouridine(55) synthase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B6H1_9LAMI)

HSP 1 Score: 135 bits (340), Expect = 7.340e-36
Identity = 79/173 (45.66%), Postives = 110/173 (63.58%), Query Frame = 0
Query:    1 MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTSYFAEMRQYEAEKRKHYRCVIYTEGVL-DERKLQLLNMQHVSIAQRTPLRVLHRRTQAVRHKTIFSTTVERVM-NEHFVLLDVVAQAGTYIKEFVHGDHGRTHPSVASLLQCFADIVQLDVTEI 171
            MLG GRPF++E+Q A   PS      ++    +L +  VRV  L  + +  +  MR+ EAEK+K Y  +++    L D+    LL+++ + I Q+TP+RVLHRR+   R KTI     ER+  + H+ LL +  QAGTYIKEFVHGD GRTHPSV S+L C A+IVQLDVT++
Sbjct:  117 MLGTGRPFLVEIQNARQFPSDELIKDIEMKINSLESKFVRVKNLKFLGSQGWELMREGEAEKQKQYAALVWISRPLNDDDAHALLSLKDMQILQKTPVRVLHRRSPLEREKTIHWMRTERIAGSSHYFLLQLCTQAGTYIKEFVHGDLGRTHPSVGSILGCRAEIVQLDVTDV 289          
The following BLAST results are available for this feature:
BLAST of Gvermi12432.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIS9_9FLOR3.110e-6560.57tRNA pseudouridine(55) synthase n=1 Tax=Gracilario... [more]
R7QGX4_CHOCR6.520e-4752.84tRNA pseudouridine(55) synthase n=1 Tax=Chondrus c... [more]
A0A803RCD0_CANSA1.090e-3642.20tRNA pseudouridine(55) synthase n=5 Tax=Cannabis s... [more]
A0A835UU65_VANPL1.170e-3643.93tRNA pseudouridine(55) synthase n=2 Tax=Vanilla pl... [more]
A0A8J5Y2V0_DIALT3.120e-3646.33Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A067D9A4_SAPPC4.460e-3645.98tRNA pseudouridine(55) synthase n=2 Tax=Saprolegni... [more]
A0A1Y1I146_KLENI4.600e-3646.82tRNA pseudouridine(55) synthase n=1 Tax=Klebsormid... [more]
A0A2U1N9V5_ARTAN6.910e-3642.77tRNA pseudouridine(55) synthase n=1 Tax=Artemisia ... [more]
A0A2R6R3M5_ACTCC7.020e-3645.66tRNA pseudouridine(55) synthase n=2 Tax=Actinidia ... [more]
A0A830B6H1_9LAMI7.340e-3645.66tRNA pseudouridine(55) synthase n=1 Tax=Phtheirosp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.3190coord: 64..172
e-value: 1.5E-36
score: 126.3
IPR039894tRNA pseudouridine synthase Pus10-likePANTHERPTHR21568UNCHARACTERIZEDcoord: 1..171
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 41..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4731284..4731811 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1Gvermi12432.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4731284..4731811 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTS
YFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLNMQHVSIAQRTPLRVL
HRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTH
PSVASLLQCFADIVQLDVTEISQKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039894Pus10-like
IPR020103PsdUridine_synth_cat_dom_sf