Gvermi12424.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12424.t1
Unique NameGvermi12424.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length429
Homology
BLAST of Gvermi12424.t1 vs. uniprot
Match: A0A2V3IGE0_9FLOR (RNA polymerase II-associated protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGE0_9FLOR)

HSP 1 Score: 415 bits (1067), Expect = 3.960e-131
Identity = 230/442 (52.04%), Postives = 300/442 (67.87%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQR---SFQTANQHAKQAHQAPSESARSAGTDQ--------------HPPLFSVSEGTNLGVA---ETKQQHEQLERAKRLWMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKLAFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAFYSPPFVRENDCSLLSVLSELHVITTLIEIAKARCTAVSTVEISKRALNAVRMIVNNSPSLPESYVLEQHSSKPSRVLDMLMQQAVGTDRLAPSTTMLACDIIANIFVKATWVDKDKDHGLQRLSLLEDFLLETAAHLNWAMRDTPFQLNPIMQEAAKGVLRLFRAYLSQNLG 422
            MS QQI +AQ++I++TL+P SI+FLK+R   S   +N+       A S S    GTD                P   S+S+          E +Q  +Q ERAK +WMTDATE + TQ  VD +L  AV+DMGPIA ERFDLTGN+LTA+++Q LPTHKGLHHHGT P SAGYTLADLL+LTRST+LSQR++AL+VLT+LI  H   VTEPML+S G+KL F+PLPA DTFHSA+TNQVAYLEAVE LLQ     ++  L+RD+YF+S FYS    ++    L+ VL ++H +T L++IA A  T++ST+  +KR+LNA R+IV  +  L    + EQ S   SR+L+ LMQ AVG D+L+ STTMLACDI+A    K+ WV+KD         L E+FLL+ A HLNWA+RD+PFQL  + +E AKGVLRLFR++L++  G
Sbjct:  169 MSVQQIREAQQQIYSTLSPQSIAFLKKRRAKSSPVSNEPKPPLPPAVSPSLPPGGTDSIQKQQLSRGSAHTASPKSASLSDSFKRSPHNSNEHQQDADQFERAKSMWMTDATEPLQTQTVVDEVLSAAVEDMGPIATERFDLTGNVLTAEQIQSLPTHKGLHHHGTSPASAGYTLADLLVLTRSTVLSQRIVALRVLTALISLHAEHVTEPMLRSGGMKLVFAPLPAADTFHSAITNQVAYLEAVEALLQPVPSFEENMLVRDLYFSSDFYSSHIQQQPTSPLVQVLGQVHCVTVLLDIASALHTSISTLSFAKRSLNACRIIVLKASDLVLRVIKEQDSPPVSRILNTLMQLAVGKDKLSSSTTMLACDILALFISKSNWVEKDAISSFDERVLSENFLLDVAVHLNWALRDSPFQLRGLERETAKGVLRLFRSFLTRANG 610          
BLAST of Gvermi12424.t1 vs. uniprot
Match: R7QQ98_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ98_CHOCR)

HSP 1 Score: 277 bits (708), Expect = 1.220e-80
Identity = 170/427 (39.81%), Postives = 240/427 (56.21%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKLAFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAFYSPPFVRENDCSLLSVLSELHVITTLIEIAKARCTAVSTVEISKRALNAVRMIVNNSPSLPESYVLEQHSSKPSRVLDMLMQQAVGTDRLAPSTTMLACDIIANIFVKATWVDKDKDHGLQRLSLLEDFLLETAAHLNWAMRDTPFQLNPIMQEAAKGVLRLFRAYLSQNLGKHMFT 427
            M+PQQIL+AQREI + L+PD+I+FLK RS             APS +  S   D H P   +S              + +E+ KRLWMTDA   + +   VD +L KA+  +GP+A  RFDL G+ LT  ++  LPTH GLHHHG  P SAGYTLADLL+LTRST+L QRV+AL++LT+L+ NHG  V+ P+++S G+ LAF+P P+   F +ALTN++A++EAVE L++    L Q  L+   Y AS FYSP  +      +LSVL+E   +  L+ IA+   +   T + + RAL  VR IV  S       ++ + +S+       + Q  +G D L P T +LACD ++   V A W D +    L      + F+      L W +RD   + +    +AAKG LR+ RA L+   G   FT
Sbjct:    1 MTPQQILEAQREIASVLSPDNIAFLKNRS-----------RPAPSPTPLS---DSHSPSTPLS------------ADDHVEQQKRLWMTDACVPLESDTSVDSLLSKALHALGPLASHRFDLKGHSLTPHQIAHLPTHLGLHHHGAEPASAGYTLADLLLLTRSTVLGQRVLALRILTALLQNHGSSVSAPLVESGGLALAFAPFPSRLNFEAALTNRIAFIEAVEALVKPHSHLAQDCLVPSFYLASRFYSPN-LHLRPPPVLSVLAESACVPVLVNIARHDASNTETEQFALRALAMVRAIVTFSAKSSRDMLVGRATSQA------MQQLCLGRDTLRPITALLACDALSQAIVNAAWSDPELVKSLDDSCFSDTFMRRVTQPLTWFLRDASVRPSECHFQAAKGALRMLRACLTFQRGLMPFT 394          
BLAST of Gvermi12424.t1 vs. uniprot
Match: A0A1X2H0E3_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H0E3_SYNRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.470e-17
Identity = 84/250 (33.60%), Postives = 123/250 (49.20%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKLAFSPLPATDTFHSALTNQ-----VAYLEAVECLLQKSCVLDQRELIRDMY 245
            MS Q++ +A++E+ + L+P+SIS L  R  + A       + +PS +AR                     A+ ++  EQ ER K  WM  + +  P  E VD   Q +V       + RFDL GNI+ A  V V P HKGLHHHG  P+ AGYTLA+LL L RST+ SQR M L  L S I+      TEP+          + + A+    SAL ++     VA ++A+  L+         E++++ Y
Sbjct:  234 MSEQELEEARQEVLSQLSPESISILLNRPKKPA------VYSSPSVAARQT-------------------AQEQKAAEQAERDKLAWMDTSLQPPPLPEAVDE--QDSVY-----RRVRFDLQGNIMDAS-VDV-PRHKGLHHHGDEPDKAGYTLAELLYLVRSTVASQRAMVLTTL-SRILWRAKSATEPVWVDILRIFRRADIAASIYLRSALDDRHLIVLVAAVQALAALVLPQEAFAAPEVLKETY 448          
BLAST of Gvermi12424.t1 vs. uniprot
Match: A0A2P4YLX9_9STRA (RNA polymerase II-associated protein 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLX9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.070e-15
Identity = 83/266 (31.20%), Postives = 131/266 (49.25%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPS-ESARSAGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEHVDHILQKAVQDMG-PIAK----ERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINHG-------PRVTEPMLKSDGIKLAFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAFYSP 253
            MSPQ+IL+AQ+E+  TL+P  I  LK R  ++ N+  ++  +  + ES      D+      + +     +A  K + E  E+ KRL   +  +   TQ   D    KA + M  P+A+    ERFDL G +L A + + LP H GL HHG  P++AGYTL +LL L RS++ SQR MAL V+  ++ N         P V   + +   I L    +   D  ++AL+  V+ L A    ++ +   D    + ++   +  Y P
Sbjct:  139 MSPQEILEAQQELLRTLDPTLIEKLKNRR-KSGNKREREVKKVVAGESVVRMEEDEQLQKEEMIKN----LAAVKTEEELKEQTKRLPADERAKLDWTQNVKDKKDSKAAKKMARPVAEDATLERFDLEGKMLEATDAE-LPVHSGLFHHGDDPDAAGYTLPELLHLARSSVASQRAMALIVVAKILHNRQVLEQSSLPLVPRVLPRDMAITLR---IVLDDQNYTALSAGVSALHAFIVPVETNATSDTHIDLSELKHGTIVYPP 395          
BLAST of Gvermi12424.t1 vs. uniprot
Match: W2MZU9_PHYPR (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MZU9_PHYPR)

HSP 1 Score: 87.4 bits (215), Expect = 8.520e-15
Identity = 71/215 (33.02%), Postives = 107/215 (49.77%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGTNL--------GVAETKQQHEQLERAKRL-----WMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINH------GPRVTEPMLKSD 196
            MSPQ+IL+AQ+E+  TL+P+ +  LK R+     +  ++ +   + +  + G      +    EG            +A  K + E  E+AK L        D T++    E V +  + A+        ERFDL G +L A + + LP H GL HHG  P++AGYTL +LL L RS++ SQR MAL V+  ++ N       G RVT  +L  D
Sbjct:  141 MSPQEILEAQQELLRTLDPELVKKLKNRN---KKERKREENMVKTRNKVAIGES----IMKHDEGNEQIQKEEMIKSLAAVKTEEELKEQAKLLPAEERAKLDWTQTTKKDEKVANGKKIALPVAEDATLERFDLDGKLLEATDAE-LPVHSGLFHHGDDPDAAGYTLPELLHLARSSVASQRAMALNVVAKILHNRQLQERAGLRVTPRVLPRD 347          
BLAST of Gvermi12424.t1 vs. uniprot
Match: V9ET35_PHYPR (Uncharacterized protein (Fragment) n=9 Tax=Phytophthora TaxID=4783 RepID=V9ET35_PHYPR)

HSP 1 Score: 87.4 bits (215), Expect = 1.190e-14
Identity = 71/215 (33.02%), Postives = 107/215 (49.77%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGTNL--------GVAETKQQHEQLERAKRL-----WMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINH------GPRVTEPMLKSD 196
            MSPQ+IL+AQ+E+  TL+P+ +  LK R+     +  ++ +   + +  + G      +    EG            +A  K + E  E+AK L        D T++    E V +  + A+        ERFDL G +L A + + LP H GL HHG  P++AGYTL +LL L RS++ SQR MAL V+  ++ N       G RVT  +L  D
Sbjct:  141 MSPQEILEAQQELLRTLDPELVKKLKNRN---KKERKREENMVKTRNKVAIGES----IMKHDEGNEQIQKEEMIKSLAAVKTEEELKEQAKLLPAEERAKLDWTQTTKKDEKVANGKKIALPVAEDATLERFDLDGKLLEATDAE-LPVHSGLFHHGDDPDAAGYTLPELLHLARSSVASQRAMALNVVAKILHNRQLQERAGLRVTPRVLPRD 347          
BLAST of Gvermi12424.t1 vs. uniprot
Match: A0A329RN83_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RN83_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.750e-14
Identity = 106/367 (28.88%), Postives = 171/367 (46.59%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQR--SFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGT-NLGVAETKQQ-HEQL------ERAKRLWMTDATESIPTQE--HVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINH------GPRVTEPMLKSDGIKLAFS-PLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAFYSPPFVRENDCSLLSVLSELHVITTLIEIAKARC---TAVSTVEISKRALNAVRMIVNNSPSLPESYVLEQ----HSSKPSRVLDMLMQQAVGTDRLA 341
            MSPQ+IL+AQ+E+  TL+P  +  LK R    +   ++  +A +  S        D+        E   +L   +T+++ HEQ       ERAK  W    T++  T E  H   I +  V+D      ERFDL G +L A + + LP H GL HHG  P++AGYTL +LL L RS++ SQR MAL V+  ++ N       G  VT  +L  D   +A +  +   D  ++AL+  V+ L A    +           + ++   +    PP V  +   L    +  H +  ++ I  A     T++S  +++  AL+ V+ ++N        Y+LE       S   ++LD+L+  A  + R A
Sbjct:  143 MSPQEILEAQQELLRTLDPKLVEKLKSRRKKEKKREENVVKAGKKVSIGESIVKHDEEKEQVQKEEMIKSLAAVKTEEELHEQSKLLPAEERAKLDW----TQTTKTDEKAHGKKISRPVVEDA---TLERFDLDGKMLDATDAE-LPVHSGLFHHGDDPDAAGYTLPELLHLARSSMASQRAMALNVVAKILHNRQLQEHTGLPVTPRVLPRD---MAMTLRIVLDDQNYTALSAGVSALHAFIVPVDDGS--SDESYLSELKHGTVVL-PPRVHLHRNGLAENKNHSHEVEEVVYIDTAEADDGTSISDEDLA--ALDPVQALLNMDLGTRLRYILETIQLPDQSATEKMLDILIAVARHSPRAA 493          
BLAST of Gvermi12424.t1 vs. uniprot
Match: D0N9F5_PHYIT (RNA polymerase II-associated protein 1, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N9F5_PHYIT)

HSP 1 Score: 85.1 bits (209), Expect = 6.370e-14
Identity = 105/371 (28.30%), Postives = 166/371 (44.74%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQR----------SFQTANQHA--KQAHQAPSESARSAGTDQHPPLFSVSEGTNLGVAETKQQHEQL---ERAKRLW-MTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINH------GPRVTEPMLKSDGIKLAFS-PLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAFYSPPFVRENDCSLLSVLSELHVITTLIEIAKARC---TAVSTVEISKRALNAVRMIVNNSPSLPESYVLEQ----HSSKPSRVLDMLMQQAVGTDRLA 341
            MS Q+I++AQ+E+  TL+P+ +  LK R          S QT N+ A  +   +   E  +    +    L +V     L     K+Q + L   ERAK  W  T      P   H   I +   +D      ERFDL G  L   + + LP H GL HHG  PE+AGYT+ +LL L RS++ SQR MAL V+  ++ N       G  VT  +L  D   LA +  +   D  ++AL+  V+ L A    +      D  E + ++ + +    PP V  +   +    S  + +  ++ I        T++S  E++  AL+ V+ +V+   +    Y+LE           ++LD+L   A  + R A
Sbjct:  143 MSSQEIMEAQQELLRTLDPELVEKLKNRKKKEKKMGRNSVQTVNKVAIGQSIRKRDEEDEQLQKEEMIKSLAAVKTEQEL-----KEQAKLLSVEERAKLDWTQTSKKSEKPATGHSKKIARPVAEDA---TLERFDLDGKSLQKTDAE-LPVHSGLFHHGDDPEAAGYTVPELLHLARSSVASQRAMALNVVAKILHNRQLQERAGLLVTPRVLPRD---LAMTLRIVLDDQNYTALSAAVSALHAFVVPVD-----DDEEFVSELKYGTVVL-PPTVHLHRNDVTKSKSHSNEVNEVVYIDTTEADDGTSISDDELA--ALDPVQALVSMDLATRLRYILESIQLPDQDATEKMLDILRAVARHSPRAA 493          
BLAST of Gvermi12424.t1 vs. uniprot
Match: A0A0P1ALE3_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALE3_PLAHL)

HSP 1 Score: 83.2 bits (204), Expect = 2.700e-13
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSEGTNLGVAET----KQQHEQL---ERAKRLWMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTE 190
            MS Q+IL+AQ+E+  +L+P+ +  LK R  +T N    +     ++        ++      +   NL   +T    K+Q + L   ERAK  W    T+SI     V    ++  Q       ERFDL G I+ A    + P H GL HHG  PE AGYT  +LL LTRS++ SQR MAL ++  ++ N   +  E
Sbjct:  140 MSTQEILEAQKELLGSLDPELVKKLKNRRKKTENIEEVRNESFKTQVTIGESIVKNEDREKETLIKNLAAVKTEKELKEQEKLLTVEERAKLDW----TQSISKNSRVSR--KRVAQIAKEPTMERFDLNGKIVEATNADI-PVHSGLFHHGDDPEIAGYTFPELLHLTRSSVASQRAMALNIVAKVLHNRQLQTLE 329          
BLAST of Gvermi12424.t1 vs. uniprot
Match: H3GPI4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPI4_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 6.430e-13
Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = 0
Query:    1 MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARSAGTDQHPPLFSVSE-GTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEHVDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPESAGYTLADLLILTRSTILSQRVMALKVLTSLI 181
            MSPQ+I +AQ+E+  TL+P  +  LK R  +      K+      ES      ++   + S++   T     E  +     ERAK  W  DA +     E      +K          ERFDL G++L A +V+ LP H GL HHG  P +AGYT+ +LL L RS++ SQR MAL VL  ++
Sbjct:   65 MSPQEIREAQQELLQTLDPQLVEKLKNRRKKQDKAPVKRTKVKIGESVVKEEEEKQEMIRSLAAVKTXXXXXEQAKLLPAEERAKLDWTQDAGK-----EKAARGKKKRRSVAEDATLERFDLDGHVLEATDVE-LPVHSGLFHHGDDPNAAGYTVPELLHLARSSVASQRAMALTVLAKVL 240          
The following BLAST results are available for this feature:
BLAST of Gvermi12424.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGE0_9FLOR3.960e-13152.04RNA polymerase II-associated protein 1 n=1 Tax=Gra... [more]
R7QQ98_CHOCR1.220e-8039.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X2H0E3_SYNRA6.470e-1733.60Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A2P4YLX9_9STRA2.070e-1531.20RNA polymerase II-associated protein 1 (Fragment) ... [more]
W2MZU9_PHYPR8.520e-1533.02Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
V9ET35_PHYPR1.190e-1433.02Uncharacterized protein (Fragment) n=9 Tax=Phytoph... [more]
A0A329RN83_9STRA3.750e-1428.88Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0N9F5_PHYIT6.370e-1428.30RNA polymerase II-associated protein 1, putative n... [more]
A0A0P1ALE3_PLAHL2.700e-1333.50Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
H3GPI4_PHYRM6.430e-1335.16Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013930RNA polymerase II-associated protein 1, N-terminalPFAMPF08621RPAP1_Ncoord: 1..29
e-value: 8.3E-9
score: 35.1
IPR013929RNA polymerase II-associated protein 1, C-terminalPFAMPF08620RPAP1_Ccoord: 119..181
e-value: 2.1E-21
score: 75.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..74
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483RNA POLYMERASE II-ASSOCIATED PROTEIN 1coord: 1..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4681699..4683076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1Gvermi12424.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4681699..4683076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=429bp
MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARS
AGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEH
VDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPES
AGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKL
AFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAF
YSPPFVRENDCSLLSVLSELHVITTLIEIAKARCTAVSTVEISKRALNAV
RMIVNNSPSLPESYVLEQHSSKPSRVLDMLMQQAVGTDRLAPSTTMLACD
IIANIFVKATWVDKDKDHGLQRLSLLEDFLLETAAHLNWAMRDTPFQLNP
IMQEAAKGVLRLFRAYLSQNLGKHMFTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013930RNA_pol_II_AP1_N
IPR013929RNA_pol_II_AP1_C
IPR039913RPAP1/Rba50