Gvermi12397.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12397.t2
Unique NameGvermi12397.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Homology
BLAST of Gvermi12397.t2 vs. uniprot
Match: A0A2V3J521_9FLOR (B-box zinc finger protein 19 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J521_9FLOR)

HSP 1 Score: 228 bits (582), Expect = 2.090e-64
Identity = 191/530 (36.04%), Postives = 265/530 (50.00%), Query Frame = 0
Query:    1 MTRLVRVRALCDGCSAAAATLFCVTLRNVLCETCDCVSSRSHL-------PHFTLTNAITAIPFXXXXXXXXXXXXXXXXXXXXXXXXNDTVHKAAPYSHCRTSIQNTLRTRAVQFRSRSQSAA-HKISVSQTNQQA-------CMHKS--PNANSRMDRKKQRAVSQRAYTSSSFLSNPKLVPKP-----PREKQANVCD--RQN----GQFCPPLERS--VPISRNSDVSRNHLENTPEDLVLHQAVELQHLEPLHPLQSETDPPRHSLFHTDEYNPFFYSRAPQSNVHVSVDTLPFSSMPSEIAEAAKSLCEPLLITEDSDIQPLETDPLADSDSCSLDLSSVIPTTSLDPASDNTMPHVNLRPPPPSPYTSTLPGSVXXXXXXXXXXXXXXSGDPSMWRNHTGSQSSKTATVAAAATAAAEMFLLKSVPDAAAPKEKQNHASLMDACPEIDPRGVAAAXXXXXXXXXXXVNMNL-----GTLSPRPPFPELSLKGRLPRHVSEPALPLRAAAQQHVFDEAMRRLDI 495
            MTRLVRVRA+CD CSAA AT++CV+  +VLC  CD    R+H            L  AITA+PF                        NDTVHKAAP SH RT IQ TLR+RAVQFR  S SAA  + S +   Q A         H+   P+ ++   + ++ A +  A+TS++  + P+   K      PR   +N     RQN     Q  PP   S  V I++  +  R   E  P            +LE   P Q    P R+ LFH ++Y+PFF S    S++ +++    F  +P+EIA+AAKSLC+PL+I+ +  +QPL  DPLA+ D  S+DLS V+   SLDP  ++ +    L+PP  +P  +  P  +              +  PS+              +AAAATAAAE +LL++   A++  E+ ++ ++ +    +DP GVA A           V++         +S R  F       RLPRH SEP LPLRAAAQ+HVFDEAMRRLDI
Sbjct:    1 MTRLVRVRAVCDDCSAAPATIYCVSHGHVLCVDCD---RRTHHNARLSAHQRIGLAAAITALPFCEYCDNAPATTYCETESTTLCDKCNDTVHKAAPLSHSRTPIQKTLRSRAVQFRPISTSAALPRCSANGPIQPAPSGPAIKSAHRPHVPSQSASPSKSRRHASNTNAHTSNNCYNPPRNDLKSSSAQSPRHNPSNTVHVMRQNLPHFTQLSPPPSSSPLVSITQTKNAYRRDSEQVPATS--------NYLELTQPSQPSDQPSRNPLFHAEDYSPFFDSHPTHSDLQLTIANPNFVPLPTEIADAAKSLCDPLIISGEPPMQPLGRDPLAEPDPNSIDLSKVVTCPSLDPDPEDCVLEEQLKPPTTTPLPTKAPSKLLKTEPHSSVDYIHGTPQPSI------------TVMAAAATAAAERYLLETTSPASSSCERLSNPAI-ECGRGLDPGGVAEAATAAAESAAAAVDIGSVPARRSIVSGRHHF------ARLPRHASEPILPLRAAAQKHVFDEAMRRLDI 500          
BLAST of Gvermi12397.t2 vs. uniprot
Match: R7QFN9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFN9_CHOCR)

HSP 1 Score: 65.1 bits (157), Expect = 4.890e-8
Identity = 48/118 (40.68%), Postives = 60/118 (50.85%), Query Frame = 0
Query:    1 MTRLVRVRALCDGCSAAAATLFCVTLRNVLCETCDCVSSRSHLPHFT------LTNAITAIPFXXXXXXXXXXXXXXXXXXXXXXXXNDTVHKAAPYS--HCRTSIQNTLRTRAVQFR 110
            MTRL  VRA+CDGC +AAAT+FCV  R V+C +CD     S  PH        L++A+TA+PF                         D V  A+  S  HCRT I +TLR R V+FR
Sbjct:    1 MTRLFGVRAVCDGCLSAAATVFCVNHRTVVCFSCDDEQHAS--PHTASHQRVDLSSAVTALPFCERCDDAPAIVYCESEGITFCDKC-DCVSHASQTSPPHCRTPISSTLRHRPVEFR 115          
The following BLAST results are available for this feature:
BLAST of Gvermi12397.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J521_9FLOR2.090e-6436.04B-box zinc finger protein 19 n=1 Tax=Gracilariopsi... [more]
R7QFN9_CHOCR4.890e-840.68Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 53..98
e-value: 0.0019
score: 27.5
coord: 6..50
e-value: 1.0
score: 7.3
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 57..93
e-value: 3.8E-6
score: 27.0
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 53..98
score: 9.996857
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 6..55
score: 8.61709
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..384
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..500
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4555625..4557127 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2Gvermi12397.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4555625..4557127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MTRLVRVRALCDGCSAAAATLFCVTLRNVLCETCDCVSSRSHLPHFTLTN
AITAIPFCEYCDDAPATVYCETEGAALCDKCNDTVHKAAPYSHCRTSIQN
TLRTRAVQFRSRSQSAAHKISVSQTNQQACMHKSPNANSRMDRKKQRAVS
QRAYTSSSFLSNPKLVPKPPREKQANVCDRQNGQFCPPLERSVPISRNSD
VSRNHLENTPEDLVLHQAVELQHLEPLHPLQSETDPPRHSLFHTDEYNPF
FYSRAPQSNVHVSVDTLPFSSMPSEIAEAAKSLCEPLLITEDSDIQPLET
DPLADSDSCSLDLSSVIPTTSLDPASDNTMPHVNLRPPPPSPYTSTLPGS
VPHDSTQPTSLPLDTSGDPSMWRNHTGSQSSKTATVAAAATAAAEMFLLK
SVPDAAAPKEKQNHASLMDACPEIDPRGVAAAATAAAASAAAAVNMNLGT
LSPRPPFPELSLKGRLPRHVSEPALPLRAAAQQHVFDEAMRRLDIDLVKH
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box