Gvermi12385.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12385.t1
Unique NameGvermi12385.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Homology
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A2V3J467_9FLOR (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J467_9FLOR)

HSP 1 Score: 278 bits (711), Expect = 3.010e-92
Identity = 141/196 (71.94%), Postives = 163/196 (83.16%), Query Frame = 0
Query:   16 AAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAFVLTLTILAL 211
            A+     +KV TVADV+KW+ DLG+SQYA  F SNEV+G ILKTLTSEELRDDL VTNLRHRR IL A  RLLQE+  P  Q LPEHGRILDHLSNVRTYHSWIRVGIQFL FAVVTLRL+PNFR++ L+TA+S YFA +GI+AL+Y V+RYK VIDMIESSGPST+N++PDR+GVV ML +A AAF L L I+AL
Sbjct:   28 ASENAPAAKVRTVADVRKWLCDLGYSQYADSFSSNEVNGSILKTLTSEELRDDLAVTNLRHRRHILDATRRLLQEDAPPTAQYLPEHGRILDHLSNVRTYHSWIRVGIQFLAFAVVTLRLAPNFRSTALVTAASFYFALVGISALLYAVFRYKRVIDMIESSGPSTHNYTPDRVGVVSMLFIALAAFTLALIIIAL 223          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A1X6P5I1_PORUM (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5I1_PORUM)

HSP 1 Score: 216 bits (550), Expect = 1.280e-66
Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 0
Query:    2 PAPHPYPLPSVLAQAAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEE--------VAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFML--ILAFAAFVL 204
            PA  P P+P             KV + ADVQ W++ LG+++Y   F +NE+ G++L+TLTS+ELRDDL V +LRHRR++L A++ LL  +        V   V  LPEHGRILDHLSNVR+YHSW+RVG+Q LGF++VTLRL+P FR   L+TA+SLYFAAIG+ AL+YGV+RY+ VI MIE SG  T  + PDR+GV+ ML  +L  A FVL
Sbjct:  105 PAAPPAPMPD------------KVHSSADVQSWLSALGYARYGPTFAANEITGDVLRTLTSDELRDDLGVRHLRHRRDLLDAISALLARDAELRSSPTVPDVVDALPEHGRILDHLSNVRSYHSWMRVGVQMLGFSIVTLRLTPKFRERPLVTAASLYFAAIGVGALLYGVFRYRQVIGMIERSGAKTPAYDPDRVGVLAMLFAVLTAAVFVL 305          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A7S2ZTG3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTG3_9RHOD)

HSP 1 Score: 189 bits (481), Expect = 2.180e-57
Identity = 97/188 (51.60%), Postives = 131/188 (69.68%), Query Frame = 0
Query:   25 VSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFR-NSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAFVLTLTILAL 211
            + T  DV  W+ +LG  +Y   F+SNE++GEIL +LTSEELRDDL V NL+HRRE+L A+  +    +      LPEHGRILDHLSNVRT+HSW+RVG+Q L FA+V+LRL P +R N +LIT  SLY++ +G  A++YG+ RY +V+  IE SG  T  + PD++GV  ML+L   A  LTL ++ L
Sbjct:   30 LQTSEDVANWLRELGKDEYISTFMSNEINGEILASLTSEELRDDLGVINLKHRRELLTAIKSI--GGMKKGEDTLPEHGRILDHLSNVRTFHSWVRVGVQLLAFALVSLRLFPTWRENRNLITGCSLYYSCVGAFAILYGLARYALVVKWIEESGVKTPKYHPDKIGVAVMLVLVLVATALTLYVITL 215          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A5J4YSG0_PORPP (SAM domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSG0_PORPP)

HSP 1 Score: 169 bits (428), Expect = 7.720e-49
Identity = 91/183 (49.73%), Postives = 122/183 (66.67%), Query Frame = 0
Query:   27 TVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEE--VAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAFVLTLT 207
            +V DV  W+   G+ +Y   F  NEVDG IL TL++EELRD+L V NL+HRR++LAA++ L+ +   VAP  +  PE G IL+HLSNVRTYHSW+R+GIQ    AV TLRL+P FR   + TAS+ Y    G+   +YG+YRY+ VI MI++S      + PD +GV  ML+L+ AA  L LT
Sbjct:   77 SVEDVADWLKRQGYPEYVDAFRFNEVDGAILTTLSTEELRDELHVCNLKHRRDLLAAIDLLVDQSGMVAPR-ETPPEDGWILNHLSNVRTYHSWLRLGIQLFSLAVATLRLTPVFRPKGITTASAFYNCLCGVGLFLYGIYRYRQVILMIDNSSQHDRFYKPDYVGVYGMLVLSLAAGALVLT 258          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A7S1XIP6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIP6_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 2.580e-46
Identity = 74/134 (55.22%), Postives = 103/134 (76.87%), Query Frame = 0
Query:   25 VSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIA 158
            ++   DV +W+  LG+ +Y + F +NEV+GEILKTL+SEELRDDL V+ LRHRR+IL A+N L++E V      LPEHGR+LDHLSNVRTYHSW+R+GIQ L  ++ TLRL+P +R+  L+TAS++ F  +G++
Sbjct:   35 ITNADDVAEWLRALGYPEYVEAFRTNEVNGEILKTLSSEELRDDLGVSVLRHRRDILDAINELVRESVPVQRDALPEHGRVLDHLSNVRTYHSWVRIGIQILALSIGTLRLAPVYRDKTLVTASAMTFGFMGVS 168          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A1X6PDD2_PORUM (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDD2_PORUM)

HSP 1 Score: 121 bits (304), Expect = 1.340e-30
Identity = 76/201 (37.81%), Postives = 114/201 (56.72%), Query Frame = 0
Query:   18 GGTTVSKVSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPA---------VQKLPEHGRILDHLSNVRTYHSWIRVGIQFL-------GFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVF-MLILAFAA 201
            G   +  + T ++V  W++DLGF +YA  FL + V G IL++LT+E+LRD+L V  LRHRR ++AA++ L  EE A              LPE GR+L H+SNVRT HSW R+ +Q L         A+V L+   +     ++ A S +  A  + A +YG +R+  V  +++S   +++ F PD  GV+F  LIL F A
Sbjct:   18 GMVQLPALDTPSEVVAWVSDLGFPEYAPAFLDHAVSGVILRSLTTEDLRDELGVKPLRHRRALIAAIDHLNSEETAGTPHAGLVTGTFSALPEFGRMLTHMSNVRTVHSWQRLAVQQLILAAGVVRLALVELKEEKDVLYRFVLAACSAFCGACVLFA-VYGGWRFLKVTSILDSDKRASSKFYPDLAGVIFSQLILHFVA 217          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A7S3EMN2_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMN2_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 1.940e-26
Identity = 63/151 (41.72%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    9 LPSVLAQAAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFA--AIGI 157
            L S  ++  G   +  V  V DV  WI  +G+ +YA  F+ NEVDG  LKT+T +ELR+++ VT  +HR +IL  ++ L+       +  +PE GR+L  LSNVRTY SW  VGIQ   F+V  +RL P  R   L+   SL+ A  AIG+
Sbjct:   57 LSSARSEFIGRDALVDVIGVDDVVDWINAIGYPEYANKFVENEVDGRTLKTITQQELREEIGVTIPKHRSDILRRLDGLIMSTSRAQLDPIPEIGRVLSLLSNVRTYQSWTLVGIQLFIFSVGYMRLGPLIRPVWLVATGSLFAAVSAIGV 207          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A7S3ECN3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECN3_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 4.840e-18
Identity = 61/176 (34.66%), Postives = 91/176 (51.70%), Query Frame = 0
Query:   31 VQKWITDLGFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRL----SPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAF 202
            V +W+  +G   Y+  F+   VD  +LK+L+ ++LRD+L VTN+  RR I   +  LL  +V      LPE GRIL HL NVR +++WIR  +Q L FAV    L       F  +  I A       + I  L+ G +RY V+  +  S   + N   P  +G++ +L+ A A F
Sbjct:   38 VVEWLERIGMGSYSAPFIEQTVDVSLLKSLSLKDLRDELGVTNMSDRRRIFNGILMLLSRDVDKYA--LPEDGRILTHLFNVRVFNAWIRCAVQLLIFAVAVNFLVFCDDVTFIRNCAIGA-----CIVAIVFLLVGFWRYFVIHRV--SKRVNYNMLVPSDIGLIPVLVSAAATF 204          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A2V3IUE9_9FLOR (DUF202 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE9_9FLOR)

HSP 1 Score: 72.8 bits (177), Expect = 2.950e-12
Identity = 53/171 (30.99%), Postives = 86/171 (50.29%), Query Frame = 0
Query:   39 GFSQYAQDFLSNEVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAFVLTLTIL 209
            G + Y   F ++ +   +L++L++ ELRD++ +  L HRR++L+    L Q   +  V   P  G IL HLSNVRT HSWIR   Q +  ++   RL    R+  +    ++    +G    +YG +RY  V+  +E+       FS D +G V  L ++     L L +L
Sbjct:   40 GLAAYVPLFEAHNLSEHVLQSLSNAELRDEVRMNVLAHRRKMLS----LTQPARSCGV---PVFGAILVHLSNVRTCHSWIRTTFQAVILSLAVSRLGA-LRDERIALGVAIGICCMGAVHSVYGGWRYLAVMKRVENG----MRFSADTVGAVLALCVSLCVAALVLLVL 198          
BLAST of Gvermi12385.t1 vs. uniprot
Match: A0A7S3A7Q0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A7Q0_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 4.660e-11
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 0
Query:   99 LPEHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSLYFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFAAFVLT 205
            +PE GR L  LSNVRTY SW  VGIQ   F+V  +RL P  R   L+   SL+ A   I    Y    Y+  + ++ +S P+    +P    VV + ++    F+LT
Sbjct:   11 IPEIGRGLSLLSNVRTYQSWTLVGIQLFIFSVGYMRLGPLIRPVWLVATGSLFAAVSAIGVFTYAGVSYRRFLAVLRNSSPNRRVLTPAYRAVVVLAVIELVIFLLT 117          
The following BLAST results are available for this feature:
BLAST of Gvermi12385.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2V3J467_9FLOR3.010e-9271.94SAM domain-containing protein n=1 Tax=Gracilariops... [more]
A0A1X6P5I1_PORUM1.280e-6653.52SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S2ZTG3_9RHOD2.180e-5751.60Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YSG0_PORPP7.720e-4949.73SAM domain-containing protein n=1 Tax=Porphyridium... [more]
A0A7S1XIP6_9RHOD2.580e-4655.22Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A1X6PDD2_PORUM1.340e-3037.81SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S3EMN2_9RHOD1.940e-2641.72Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S3ECN3_9RHOD4.840e-1834.66Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IUE9_9FLOR2.950e-1230.99DUF202 domain-containing protein n=1 Tax=Gracilari... [more]
A0A7S3A7Q0_9RHOD4.660e-1136.45Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 23..90
e-value: 9.0E-12
score: 55.1
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 27..87
e-value: 1.5E-14
score: 54.2
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 26..90
score: 16.705479
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 27..93
e-value: 1.7E-16
score: 62.3
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 27..89
IPR003807Domain of unknown function DUF202PFAMPF02656DUF202coord: 107..170
e-value: 3.8E-11
score: 43.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 211..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..114
NoneNo IPR availableCDDcd09487SAM_superfamilycoord: 30..86
e-value: 7.29357E-14
score: 61.8717
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 191..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4461075..4461710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1Gvermi12385.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4461075..4461710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MPAPHPYPLPSVLAQAAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSN
EVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLP
EHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSL
YFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFA
AFVLTLTILAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed_sf
IPR003807DUF202