Gvermi12382.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12382.t1
Unique NameGvermi12382.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Homology
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A2V3J6V0_9FLOR (Membrane-anchored ubiquitin-fold protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V0_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 1.010e-76
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 0
Query:    1 MDVDKTALSQADTALTDLDSSPAVNHSMCDIRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDTSPGVAASAA-VDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM 145
            MD +K ALSQADTALTD+DSSPAV +S CDIRFL+VNGTSFRL+VPASSTI +VK+AVIQHRPKELADFL DT+P  AA+   VDDIRVLHLGKFLDD KTLKECNF TA+NEFTTVHLSVRVP++PSD+VKDKFNKK   CCQVM
Sbjct:    1 MDTEKPALSQADTALTDVDSSPAVQNSSCDIRFLMVNGTSFRLTVPASSTIHDVKDAVIQHRPKELADFLKDTNPNAAATPTKVDDIRVLHLGKFLDDVKTLKECNFNTATNEFTTVHLSVRVPSNPSDEVKDKFNKKKPPCCQVM 146          
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A7S0BLQ6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLQ6_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 3.440e-28
Identity = 60/136 (44.12%), Postives = 88/136 (64.71%), Query Frame = 0
Query:   11 ADTALTDLDS-SPAVNHSMCDIRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDT-SPGVAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQV 144
            AD   TD  +   A + S C +RFLLVNG  FR+  PA ++I  VKN++I+ +P EL D  + T SP +     +DDIR+L+LGKFL+D KTL+EC+F   S+  TTVH+S++ P+S  ++V+ +  K  S CC +
Sbjct:    6 ADVGTTDASAVESADDGSSCFLRFLLVNGNDFRMEFPAKTSIRGVKNSIIKSKPPELVDLAERTHSPAIEK---IDDIRILYLGKFLEDYKTLEECSFGVGSSNSTTVHISLK-PSSSVNEVQKERRKNKSGCCTL 137          
BLAST of Gvermi12382.t1 vs. uniprot
Match: R7QSY1_CHOCR (Rad60-SLD_2 domain-containing protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSY1_CHOCR)

HSP 1 Score: 101 bits (252), Expect = 1.990e-24
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0
Query:   65 ELADFLDDTSPG-VAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM 145
            EL  FL +++P  ++  A  ++IR+LHLGKFLDDAKTL+EC F +  +  TTVH+S+RVPT  S+ VK+K NKKGS CC++M
Sbjct:   95 ELVAFLKESNPNAISGPAKTEEIRILHLGKFLDDAKTLQECKFASGPDNLTTVHISLRVPTKASEDVKEKINKKGSACCEIM 176          
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A7S2ZMW3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMW3_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 2.210e-18
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   43 LSVPASSTILNVKNAVIQHRPKELADFLDDT-SPGVAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQV 144
            +  PA ++I  VKNA+I+ +P+EL D  + T SP   A   +DDIR+L+LGKFL+D KTL+EC+    S+  TTVH+S++ P+   ++V+ +  KK S CC +
Sbjct:    1 MEFPARTSIRGVKNAIIKSKPQELVDLAEKTHSP---ALEKIDDIRILYLGKFLEDYKTLEECSLGIGSSNSTTVHISLK-PSLSVNEVQKERRKKKSGCCTL 99          
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A1X6NKE9_PORUM (Rad60-SLD_2 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKE9_PORUM)

HSP 1 Score: 82.4 bits (202), Expect = 2.490e-16
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 0
Query:   28 MCDIRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDTS-PGVAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNE-------FTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM 145
            +C +RFLL N T FR+S P  +TI ++K  +I   P +++DFL  +  P V ++   +++R+LHLGKFLDD + L + +F    N         T VHL  +   + +++ K++  K    CC +M
Sbjct:  129 LCTLRFLLANSTEFRISAPPETTIRDIKTQIITQHPPQVSDFLRASQLPPVVST---EEMRILHLGKFLDDPRKLADYSFAVGGNAPGDPTDGVTAVHLLCKPLKAAAEEAKERPPKGPGCCCSLM 251          
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A7S1ERV6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERV6_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 8.270e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query:   25 NHSMCDIRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQV 144
            N   C IRFLL N TSF        TI  VK +++  +P EL + L+++S    +S  V ++R+L LG+FL+D+KTL ECN +   ++ TTVHLSV+  TS  D          + CC V
Sbjct:   27 NMQSCKIRFLLPNDTSFTRDFEPQFTIARVKQSLLDDKPPELVEQLENSSQVYPSS--VTELRILLLGRFLEDSKTLTECNVSL--DDVTTVHLSVKSITS-EDPSSTNRKSHPTGCCAV 141          
BLAST of Gvermi12382.t1 vs. uniprot
Match: M2XVT2_GALSU (Ubiquitin-like domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVT2_GALSU)

HSP 1 Score: 66.6 bits (161), Expect = 3.760e-11
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 0
Query:   28 MCDIRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKTLKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM 145
            +C IRFLL++G  FR++ P ++T+L +K  V++ RP+    FL+     + +     DIR+ + GK +++ KTL++  +  +  E +T+H  VR+ T    Q +    KK   C   +
Sbjct:   32 VCTIRFLLLDGNDFRVAFPPNTTVLQLKERVLEDRPQAFLSFLEHNR--LPSPLYPSDIRLFYFGKDMEEEKTLQD--YGISPQEVSTIHFVVRMRTHQVVQSEKDEVKKQRACASCV 145          
BLAST of Gvermi12382.t1 vs. uniprot
Match: A0A067QA44_9AGAM (Ubiquitin-like domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067QA44_9AGAM)

HSP 1 Score: 53.9 bits (128), Expect = 7.940e-6
Identity = 40/115 (34.78%), Postives = 55/115 (47.83%), Query Frame = 0
Query:   31 IRFLLVNGTSFRLSVPASSTILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKTLKECNF-------TTASNEFTTVHLSVRVPTSPSDQVKDKFNKKG 138
            + FLLV G    +S    +T+  VK  +    P E A++ D+  P      A   +R+L+LGK L D  TL + NF       T  +   T VHLS+R    PS+   D F KKG
Sbjct:  114 VTFLLVTGRRRTMSFEPDTTVGRVKELIWNTWPSE-AEWQDERPP------APSYLRILYLGKILQDDDTLTKLNFPATTSSPTVPATPSTIVHLSIRPHAHPSE---DDFKKKG 218          
The following BLAST results are available for this feature:
BLAST of Gvermi12382.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J6V0_9FLOR1.010e-7680.14Membrane-anchored ubiquitin-fold protein 1 n=1 Tax... [more]
A0A7S0BLQ6_9RHOD3.440e-2844.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
R7QSY1_CHOCR1.990e-2454.88Rad60-SLD_2 domain-containing protein (Fragment) n... [more]
A0A7S2ZMW3_9RHOD2.210e-1843.69Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NKE9_PORUM2.490e-1634.13Rad60-SLD_2 domain-containing protein n=1 Tax=Porp... [more]
A0A7S1ERV6_9RHOD8.270e-1640.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2XVT2_GALSU3.760e-1130.51Ubiquitin-like domain-containing protein n=1 Tax=G... [more]
A0A067QA44_9AGAM7.940e-634.78Ubiquitin-like domain-containing protein n=1 Tax=J... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039540UBL3-like, ubiquitin domainPFAMPF13881Rad60-SLD_2coord: 29..142
e-value: 2.3E-12
score: 47.0
NoneNo IPR availableGENE3D3.10.20.90coord: 14..126
e-value: 2.3E-22
score: 80.7
NoneNo IPR availablePANTHERPTHR13169:SF0UBIQUITIN-LIKE PROTEIN 3coord: 26..144
IPR040015UBL3-likePANTHERPTHR13169UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEINcoord: 26..144
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 19..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4453986..4454628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12382.t1Gvermi12382.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4453986..4454628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12382.t1 ID=Gvermi12382.t1|Name=Gvermi12382.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MDVDKTALSQADTALTDLDSSPAVNHSMCDIRFLLVNGTSFRLSVPASST
ILNVKNAVIQHRPKELADFLDDTSPGVAASAAVDDIRVLHLGKFLDDAKT
LKECNFTTASNEFTTVHLSVRVPTSPSDQVKDKFNKKGSMCCQVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039540UBL3-like_ubiquitin_dom
IPR040015UBL3-like
IPR029071Ubiquitin-like_domsf