Gvermi12377.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12377.t1
Unique NameGvermi12377.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length121
Homology
BLAST of Gvermi12377.t1 vs. uniprot
Match: A0A2V3J6X8_9FLOR (GATA zinc finger domain-containing protein 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6X8_9FLOR)

HSP 1 Score: 104 bits (260), Expect = 1.840e-26
Identity = 58/118 (49.15%), Postives = 74/118 (62.71%), Query Frame = 0
Query:   10 VPRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRAGADKLKPGPKG--ADAAAASRPMELSALPPPDE--PSRRQPRSSGIAIYELLNDECAAC-----GVAAAKTHARPPK 118
            +PRVCQ+CG T+TSQWRYG N+  LLCNACGI+WKR N R  ++++KPGPK   A  A A+  M+LS L  P E  PS  + + S +AI ELLND+           A +    RPPK
Sbjct:   15 IPRVCQNCGTTETSQWRYGPNNDTLLCNACGIRWKRKNRRPDSERVKPGPKRTLAPHACANAQMDLSKLLSPIEHSPSSVRKQRSCMAISELLNDDVPRSPPVPRASATSPNKVRPPK 132          
BLAST of Gvermi12377.t1 vs. uniprot
Match: R7QRN6_CHOCR (GATA-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRN6_CHOCR)

HSP 1 Score: 72.4 bits (176), Expect = 3.160e-13
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 0
Query:   12 RVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRAGADKLKPGPKGADAAAASRPMELSALPPPDEPSRRQP 87
            R CQ C  + TSQWRYG + K+LLCNACGI+WKR N      +LKPGPK       SR    +  P P+  S  +P
Sbjct:    8 RACQTCHTSVTSQWRYGLSGKVLLCNACGIRWKRKNRTTDKRRLKPGPK------RSRQCSTTTCPSPNYMSSFRP 77          
BLAST of Gvermi12377.t1 vs. uniprot
Match: A0A8J4LMT6_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LMT6_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 3.180e-6
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0
Query:   14 CQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRAGADKLKPGPKGADAAAA 67
            C HCG T++ QWR G   K +LCNACG +++R N    A  +    K A AAAA
Sbjct:  396 CDHCGATESPQWRRGPPAKPMLCNACGTRFRRTNQLNPAAAVSTANKAAAAAAA 449          
BLAST of Gvermi12377.t1 vs. uniprot
Match: L8GTF3_ACACA (GATA zinc finger domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GTF3_ACACA)

HSP 1 Score: 53.9 bits (128), Expect = 6.330e-6
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 0
Query:    7 SAAVPRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNP 48
            S A  R CQ CG   T +WR G N K  LCNACG+++++N P
Sbjct:  639 SRAAGRTCQSCGTATTPEWRMGPNGKGTLCNACGLRYRKNKP 680          
BLAST of Gvermi12377.t1 vs. uniprot
Match: A0A139AKW7_GONPJ (GATA-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AKW7_GONPJ)

HSP 1 Score: 53.5 bits (127), Expect = 8.610e-6
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0
Query:   11 PRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNN--PRAGADKLKPG 58
            PRVC +CG   T  WR+G     +LCN+CG+KW+R    P     K +PG
Sbjct:  448 PRVCTYCGSGSTPMWRHGPPPYAILCNSCGVKWRRGKILPDMPHAKYRPG 497          
The following BLAST results are available for this feature:
BLAST of Gvermi12377.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J6X8_9FLOR1.840e-2649.15GATA zinc finger domain-containing protein 8 n=1 T... [more]
R7QRN6_CHOCR3.160e-1347.37GATA-type domain-containing protein n=1 Tax=Chondr... [more]
A0A8J4LMT6_9CHLO3.180e-646.30Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
L8GTF3_ACACA6.330e-650.00GATA zinc finger domain containing protein n=1 Tax... [more]
A0A139AKW7_GONPJ8.610e-644.00GATA-type domain-containing protein n=1 Tax=Gonapo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 8..60
e-value: 8.4E-9
score: 45.2
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 14..46
e-value: 5.6E-12
score: 45.1
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 12..47
score: 9.406961
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 13..47
e-value: 7.89753E-12
score: 53.9158
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 6..75
e-value: 1.9E-14
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..92
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 8..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4434444..4434915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1Gvermi12377.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4434444..4434915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=121bp
MAAAGASAAVPRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRA
GADKLKPGPKGADAAAASRPMELSALPPPDEPSRRQPRSSGIAIYELLND
ECAACGVAAAKTHARPPKKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA