Gvermi12371.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12371.t1
Unique NameGvermi12371.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length457
Homology
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A2V3IK20_9FLOR (E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK20_9FLOR)

HSP 1 Score: 183 bits (465), Expect = 2.570e-53
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0
Query:  342 LQIHYFHEDHDTDHFLDYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPNRPRRR 450
            ++IHY    H  D  LDYEHLIRLD+QL+REKNRAD DQI+SLPT+KAT EDKE+RCCICMCDVEEGE LR+LPCSHKYH+SCIDEWLTYNGCCPVDKKRIAP R R R
Sbjct:    1 MEIHYLQGLHG-DRALDYEHLIRLDEQLLREKNRADNDQINSLPTRKATAEDKEVRCCICMCDVEEGEVLRVLPCSHKYHQSCIDEWLTYNGCCPVDKKRIAPRRSRGR 108          
BLAST of Gvermi12371.t1 vs. uniprot
Match: R7QS17_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS17_CHOCR)

HSP 1 Score: 174 bits (441), Expect = 2.130e-44
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 0
Query:  357 LDYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPNRPRRR 450
            LDYE+LIRLD+QL+R+KNRAD  QIDSLP +KAT  DKEIRCC+CMCDVEEGEELR+LPCSHKYHK CIDEWLTYNGCCPVDKKRIAP R RRR
Sbjct:  549 LDYENLIRLDEQLMRDKNRADTSQIDSLPMQKATTADKEIRCCVCMCDVEEGEELRVLPCSHKYHKKCIDEWLTYNGCCPVDKKRIAPPRSRRR 642          
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A7S0ZG11_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZG11_9RHOD)

HSP 1 Score: 98.6 bits (244), Expect = 1.080e-18
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 0
Query:  358 DYEHLIRLDDQLVREKNR---ADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPN 445
            +YE ++RLD+ L  E  R   A+   I  LP  KATV+D E  C IC+CD++ GE+LR LPCSH YH  CIDEWL  N  CPVD +RI  N
Sbjct:  338 EYESMLRLDEALEAESIRRRGANPTMISELPVYKATVKDTENSCRICLCDIQVGEDLRRLPCSHSYHPKCIDEWLKRNAICPVDNQRIDGN 428          
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A7S1T786_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T786_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 3.870e-15
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  358 DYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRI 442
            DYE L+RLD+++   +  A    + SLPT  AT    E +CCIC+C+ EEGE ++ LPC H +H++C+D WL     CP+DK+ I
Sbjct:  261 DYETLVRLDERIPNNRG-AQATVLQSLPTSLATARMTEEQCCICLCNYEEGETVKRLPCLHVFHQTCVDAWLERQASCPIDKRSI 344          
BLAST of Gvermi12371.t1 vs. uniprot
Match: F0ZRJ6_DICPU (RING-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZRJ6_DICPU)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-13
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 0
Query:  358 DYEHLIRLDDQLVREK-----------NRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRI 442
            DY+ L+ LDD +  +            ++ DK+Q  +      T  +    CCIC+C++E GEE+R LPC H +H +CID+WL  N  CPVDKK I
Sbjct:    9 DYDLLLSLDDNINNKGATNTEIIKLPVHKIDKNQATNPENNGPTTNET---CCICLCEMENGEEVRTLPCKHFFHVTCIDQWLKVNKVCPVDKKAI 101          
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A0S7I2L2_9TELE (RN167 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7I2L2_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 9.930e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  373 KNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNG-CCPVDKKRIAPNRP 447
            KNR  K+Q+  +PT K    D    C IC+ + EEG++LR+LPCSH YH  C+D WLT     CPV K+R+  N P
Sbjct:  121 KNRLTKEQLKRIPTHKFRKGDDYDLCAICLDEYEEGDKLRVLPCSHAYHCKCVDPWLTLTKKTCPVCKQRVTRNNP 196          
BLAST of Gvermi12371.t1 vs. uniprot
Match: UPI00102D6799 (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI00102D6799)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-12
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0
Query:  374 NRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNG-CCPVDKKRIAPN 445
            NR  KDQ+  LP  K    D+   C IC+ + E+G++LRILPCSH YH  C+D WLT     CPV K+++ P+
Sbjct:    2 NRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 74          
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A1A8ALF1_NOTFU (RING-type E3 ubiquitin transferase n=7 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8ALF1_NOTFU)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  373 KNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNG-CCPVDKKRIAPNRP 447
            KNR  KDQ+  +PT      D    C IC+ + EEG++LR+LPCSH YH  C+D WLT N   CPV K+R+  N P
Sbjct:  213 KNRLTKDQLKRIPTHTFKKGDDYDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTQNKKTCPVCKQRVIQNNP 288          
BLAST of Gvermi12371.t1 vs. uniprot
Match: F4PRR3_CAVFA (RING-type domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRR3_CAVFA)

HSP 1 Score: 80.1 bits (196), Expect = 2.540e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0
Query:  358 DYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRI 442
            DYE L++LD+ +  +  +A   +I  LPT K     K   CCIC+C++E G+ ++ LPC+H +H  CID WL  N  CP+DK+ I
Sbjct:  590 DYELLLQLDENVNNKGAQAT--EIKQLPTHKIKTGSKIDTCCICLCEMEIGQNVKSLPCTHYFHTECIDNWLKINKICPIDKQSI 672          
BLAST of Gvermi12371.t1 vs. uniprot
Match: A0A672JPK0_SALFA (RING-type E3 ubiquitin transferase n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672JPK0_SALFA)

HSP 1 Score: 79.0 bits (193), Expect = 2.960e-12
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  373 KNRADKDQIDSLPTKKATVEDKEIRCCICMCDVEEGEELRILPCSHKYHKSCIDEWLTYNG-CCPVDKKRIAPNRP 447
            KNR  K+Q+  +PT + T  D    C IC+ + EEG++LR+LPCSH YH  C+D WLT     CPV K+R+  N P
Sbjct:  216 KNRLSKEQLKKIPTHRFTKGDDYDVCAICLDEYEEGDKLRVLPCSHAYHCKCVDPWLTQTKKTCPVCKQRVTRNNP 291          
The following BLAST results are available for this feature:
BLAST of Gvermi12371.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK20_9FLOR2.570e-5378.90E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilar... [more]
R7QS17_CHOCR2.130e-4484.04RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A7S0ZG11_9RHOD1.080e-1852.75Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1T786_9RHOD3.870e-1544.71Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
F0ZRJ6_DICPU1.470e-1339.58RING-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A0S7I2L2_9TELE9.930e-1347.37RN167 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
UPI00102D67991.230e-1246.58E3 ubiquitin-protein ligase RNF13 n=1 Tax=Homo sap... [more]
A0A1A8ALF1_NOTFU1.610e-1248.68RING-type E3 ubiquitin transferase n=7 Tax=Nothobr... [more]
F4PRR3_CAVFA2.540e-1242.35RING-type domain-containing protein n=1 Tax=Cavend... [more]
A0A672JPK0_SALFA2.960e-1247.37RING-type E3 ubiquitin transferase n=2 Tax=Salaria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 398..438
e-value: 4.0E-5
score: 33.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 397..437
e-value: 8.4E-10
score: 38.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 398..439
score: 11.146755
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 363..445
e-value: 6.8E-18
score: 66.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR45931:SF3SI:CH211-59O9.10coord: 221..443
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 221..443
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 398..437
e-value: 8.46019E-17
score: 71.9493
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 391..445

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4390331..4391803 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1Gvermi12371.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4390331..4391803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=457bp
MASQPRPQSSGSRPQHTPRLVELDQILARNPCMSTHGSGDLQTNSRAIPF
TPALRPSSVNSTVYSDGNPLRHNPSVPRRYVHLERNQGAMLGRDTTPSFV
HTGTVRRSYPSSAETPSRHGIGTESRHSAVPNHLLGSTEPRVNPLRHNNQ
SETSQSLQNVNNTVRPVEGQRHNYSIEALTNPTTAGGNRPDSSVPGSVGL
LGERMPQVRRMDSPTQIRLMQYRRERELRHLRRVRYQPPPRPSPANNTRV
WSYALPSMEAINAQNREGAEQVIRRSAEQALRRGAEQALRRSAEQALRRG
AMRMRAARSAATGSGNTSPHVRGSHEDAPVVHRMIHVNRAGLQIHYFHED
HDTDHFLDYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCI
CMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPNRPRRR
SARLRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD