Gvermi12358.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12358.t1
Unique NameGvermi12358.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Homology
BLAST of Gvermi12358.t1 vs. uniprot
Match: A0A2V3ICW9_9FLOR (DUF1775 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICW9_9FLOR)

HSP 1 Score: 199 bits (507), Expect = 7.340e-63
Identity = 97/164 (59.15%), Postives = 122/164 (74.39%), Query Frame = 0
Query:    4 KLVVAQLLLCSVLVLAHVTITPERIPAGKSSIIQIRVSHDCGDDTIGTTNFTVVMPMKMG-VTVEQDASWTVILNKDPEDKDHITSITYLGFLPDGFYKLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPSCDAHGGGELRYPAPHVNVTAHEGSGH 166
            KL+ A L LC  L  AHV ITP  +PA KSSIIQ+RVSHDCGD+T+GTTNFT +MPMKM  V+VE D +W +++NKD ED+D++ S+T+LGFLPDGFYKLFG+R+R     AG +L+F SYQDCHNQG S+AWD I + D     + RYPAP+V +     SGH
Sbjct:    4 KLLSACLALCVALAAAHVKITPAEVPANKSSIIQLRVSHDCGDETVGTTNFTFIMPMKMKYVSVELDTAWKILINKDEEDEDYVRSVTFLGFLPDGFYKLFGVRMRFPDLPAGEKLYFKSYQDCHNQGASLAWDQIATDDNP---KPRYPAPYVTLVEPTESGH 164          
BLAST of Gvermi12358.t1 vs. uniprot
Match: A0A2V3ICW4_9FLOR (DUF1775 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICW4_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 6.000e-62
Identity = 95/149 (63.76%), Postives = 118/149 (79.19%), Query Frame = 0
Query:   19 AHVTITPERIPAGKSSIIQIRVSHDCGDDTIGTTNFTVVMPMKMG-VTVEQDASWTVILNKDPEDKDHITSITYLGFLPDGFYKLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPSCDAHGGGELRYPAPHVNVTAHEGSGH 166
            AHV+ITP+ +PAGKSSIIQ+RVSHDCGD+TIGTTNFTVV+P KM  VTVE D +W ++++K  +D+D++ S+T+LGFLPDGFYKLF +RIR   E  G +L+F SYQDCHNQGTS+AWD IP CD +   + RYPAPHV V     SGH
Sbjct:   20 AHVSITPKEVPAGKSSIIQLRVSHDCGDETIGTTNFTVVLPSKMARVTVELDTAWNILIHKHAQDEDYVQSVTFLGFLPDGFYKLFAMRIRFPDE-VGQKLYFRSYQDCHNQGTSLAWDEIP-CDHNP--DPRYPAPHVTVVNATESGH 164          
BLAST of Gvermi12358.t1 vs. uniprot
Match: A0A1X6NT16_PORUM (DUF1775 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NT16_PORUM)

HSP 1 Score: 103 bits (256), Expect = 4.810e-24
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 0
Query:   17 VLAHVTITPERIPAGKSSIIQIRVSHDCGDDTIGTTNFTVVMPMKM-GVTVEQDASWTVILNKDPEDKDHIT----------SITYLGFLPDGFYKLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPS--CDAHGGGELRYPAPHVNV 158
            V+ HVTI P++ P     + +IR+ HDCGD T+GT+N TV +P  +  V  EQ A W  I      D   ++          + T++GFLPDG Y+ FGL +++  +  G+ L++ + QDCH       WD IP+  C+A     L +PAP V +
Sbjct:   85 VVGHVTINPKKAPTSGHLLFKIRLPHDCGDKTVGTSNITVTLPPGVVSVKQEQVAGWLAIHKMKTLDPPLVSGGRSYTETMETATWVGFLPDGMYREFGLSVKLLPQADGTVLYWKAVQDCHGGEAPRVWDEIPTSPCNAT---RLAHPAPKVEL 236          
The following BLAST results are available for this feature:
BLAST of Gvermi12358.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ICW9_9FLOR7.340e-6359.15DUF1775 domain-containing protein n=1 Tax=Gracilar... [more]
A0A2V3ICW4_9FLOR6.000e-6263.76DUF1775 domain-containing protein n=1 Tax=Gracilar... [more]
A0A1X6NT16_PORUM4.810e-2436.13DUF1775 domain-containing protein n=1 Tax=Porphyra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038507YcnI-like superfamilyGENE3D2.60.40.2230coord: 18..166
e-value: 4.7E-24
score: 87.2
IPR012533YcnI-likePFAMPF07987DUF1775coord: 20..158
e-value: 4.6E-18
score: 65.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..166
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4335808..4336308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1Gvermi12358.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4335808..4336308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MVTKLVVAQLLLCSVLVLAHVTITPERIPAGKSSIIQIRVSHDCGDDTIG
TTNFTVVMPMKMGVTVEQDASWTVILNKDPEDKDHITSITYLGFLPDGFY
KLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPSCDAHGGGELR
YPAPHVNVTAHEGSGH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038507YcnI-like_sf
IPR012533YcnI-like