Gvermi12335.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12335.t1
Unique NameGvermi12335.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length406
Homology
BLAST of Gvermi12335.t1 vs. uniprot
Match: A0A2V3IHE8_9FLOR (HIT-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHE8_9FLOR)

HSP 1 Score: 301 bits (770), Expect = 1.130e-94
Identity = 171/391 (43.73%), Postives = 248/391 (63.43%), Query Frame = 0
Query:   37 SDSEESEQPLRSLSKGENEPHVLEQLLNAMNDDEKETFFSMFNVLMERACGSRSVPPKDGSGKGSQGTLIGSSSTCNPAGSLNDSSG--GFDCGEQQQETD------------SKREDIADTLEDLVQDMEELNLTYEQILSKLPRELADKFFDHLKEASFHETLKPWRPWW--------HVSRDDDGDDEEAIEP---PPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLRLYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIEVVSKCYGREVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRAIKWGTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERGRCEELRVAKRVVRLVS 402
            SD+ +SE+P        NEPHVLE+L++++++  ++  F++ +  MERACGS S PP    GKG            +   +L+DS+   GF      Q+T+            ++ ED    LE+LV+DMEE  ++Y++ILS+LP  + D+F + +K+ + HETLKPW PWW         V+ + +  DE+  EP   PPLPK  +L+V+PE+P+  ASP +IN VIDVL +ICL+LRL+DGDCLSDA HAA+ +W  S  LS+D RY T +QAC AC++ +S+     +A + L+D A VLGG  DWV+RCLFYGQ++L+     V  +  R+ IK   +K+G++VAW+LCQ S  F  A+R V SFVE+E+GR EELR+A+RVV+ V 
Sbjct:   91 SDTGQSEEPSAEDENNSNEPHVLEELIDSLDEAGRDALFTVLHSAMERACGSES-PPNRERGKGEDPDAPNKPQRTH---TLDDSAAKTGFAIRGSLQKTEKQGDRRKENTFETRPEDTVTVLEELVEDMEEREVSYDEILSRLPSHIVDEFHEKMKQHNLHETLKPWTPWWCVGHRIEEQVTLNTECADEQYPEPAALPPLPKKSDLLVTPEIPQFNASPYVINSVIDVLASICLTLRLHDGDCLSDASHAARTMWNYSSVLSSDARYKTENQACWACVQAISETDDNHLAFSILQDVALVLGGSCDWVSRCLFYGQSLLQASLNEVVDKNSRKIIKRRMRKVGYLVAWSLCQPSSKFGDASRRVDSFVEIEQGRREELRIARRVVQQVK 477          
BLAST of Gvermi12335.t1 vs. uniprot
Match: R7Q3D1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3D1_CHOCR)

HSP 1 Score: 185 bits (469), Expect = 3.730e-50
Identity = 126/355 (35.49%), Postives = 191/355 (53.80%), Query Frame = 0
Query:   56 PHVLEQLLNAMNDDEKETFFSMFNVLMERACGSRSVPPKDGSGKGSQGTLIGSSSTCNPAGSLNDSSGGFDCGEQQQETDSKREDIAD----TLEDLVQDMEELNLTYEQILSKLPRELADKFFDHLKEASFHETLKPWRPWW-HVSRDD----DGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLRLYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACI-EVVSKCYGREVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRAIKWGTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERGRCEELRVAKRVVRL 400
            P +LEQ +N+++D  KE F SM +  +      +++  + G G  S    +G  +  +PAG            + Q +  +   + AD     LE+L  DME  +L+Y++IL +LP E+A  F   L +      L+ WRPWW  +  DD    DG D    E PPLP  + L+V   V +RA SP ++N V +VL A C+SLRL +GD  SD  H A+ IW  S  LS D RY ++ +AC + + ++V     +  AL    D + V+ G S+WV R L+  Q +  E         G++ ++   +KI ++V+WALCQ++     AAR+V S+ E+ERGRCEE+RVA   +RL
Sbjct:  120 PELLEQFINSLDDQGKE-FVSMIDKGVRERLEEQNLLAR-GEGAASLIPDVGKEAPSSPAGRK----------KAQHDLPANAPESADGVTEKLEELTHDMEAQDLSYDEILRRLPEEMARDFEARLLDGRASRMLQLWRPWWIFLPVDDVVENDGSDGSVAELPPLPSPDSLIVPISVSRRA-SPTIVNNVSEVLGAYCMSLRLCNGDWHSDPSHVARKIWEFSSVLSDDRRYASMEEACTSSMGKLVQVGKSQAAALEAFNDVSAVISGRSEWVARALYECQGIF-EAALAEAPAMGKKPLRARVRKIAYLVSWALCQDTSALVIAARAVLSYAELERGRCEEVRVAGEAIRL 460          
BLAST of Gvermi12335.t1 vs. uniprot
Match: A0A166A936_DAUCS (HIT-type domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166A936_DAUCS)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-6
Identity = 59/240 (24.58%), Postives = 107/240 (44.58%), Query Frame = 0
Query:  187 LKPWRPWW--------HVS------------------RDDDGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLRLYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIE-----VVSKCYGREVALATLEDAACVL--GGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRA--------IKWGTKKIGFMVAWALCQESFVFTHAARSVGSFVEMER 385
            ++PW PWW        H+S                  + +  ++++++  PP P+     VS ++   A SPLL   ++D++ + C +LRLY+G+ L+D   +      +S  L    +  TVS+A   C+E     V+    G +  L  L+D  C+L  GG +     C F  Q +++   K ++ +  R++        +K   +K+ FM+ W   Q    +     S+ S VE E+
Sbjct:  162 IEPWEPWWLKPSAKTIHLSEQGSRLVQPIVRHESIASKSEIVENDQSLHIPPGPETPLPPVS-KLSATAPSPLLAVHLVDIIYSYCFTLRLYNGEWLTDPIGSVMHALSVSLVLGQGGKPETVSEAVSHCLEQTCSPVLRHVGGLQFGLGLLDDVVCLLSIGGTALVCLLCDF--QRMIQAAEKELKSEKPRKSRRVEAKGNLKSAERKVYFMMCWVHEQHEDTWF----SIASMVEAEK 394          
BLAST of Gvermi12335.t1 vs. uniprot
Match: M5WUD7_PRUPE (HIT-type domain-containing protein n=7 Tax=Prunus TaxID=3754 RepID=M5WUD7_PRUPE)

HSP 1 Score: 59.7 bits (143), Expect = 4.180e-6
Identity = 58/241 (24.07%), Postives = 103/241 (42.74%), Query Frame = 0
Query:  185 ETLKPWRPWW--------------------------HVSRDDDGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLRLYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIE-----VVSKCYGREVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRA--------IKWGTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERG 386
            + +KPW PWW                           +S +DD +  +A E PP P      VS ++     SP L   ++D++ + C +LRLY+GD LSDA  +A  +  +S  L    +  TV +A   C+E        +  G +  L  ++D   +L   +  +   L   Q +++ G + ++ +  R++        +K   +KI F++ W   Q       A  S+ + V+ E+G
Sbjct:  146 KMIKPWDPWWLKPSARAITFSKEGTQLIKPLANEEESMSTEDDLESNQASEIPPGPDTPLPPVS-KLSSTKPSPTLAVHLVDIIYSYCFTLRLYNGDWLSDATGSAMVLLSVSSVLGQGGQPETVLEALSYCLEQTCSPAFRQMGGLQFGLGLIDDVITLLTLGTPALLCLLSDLQRMVQAGERELKSEKPRKSRRAEIRSKLKVAERKIYFIMCWVHEQPG----EAWSSLAAIVKAEKG 381          
The following BLAST results are available for this feature:
BLAST of Gvermi12335.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHE8_9FLOR1.130e-9443.73HIT-type domain-containing protein n=1 Tax=Gracila... [more]
R7Q3D1_CHOCR3.730e-5035.49Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A166A936_DAUCS1.040e-624.58HIT-type domain-containing protein n=3 Tax=Daucus ... [more]
M5WUD7_PRUPE4.180e-624.07HIT-type domain-containing protein n=7 Tax=Prunus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 138..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..130
IPR039646Zinc finger HIT domain-containing protein 2PANTHERPTHR15555ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATEDcoord: 130..375

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4262654..4263871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1Gvermi12335.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4262654..4263871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MRRDDDLQLFQDFEPSSSDSNRRAPDERQASSGVCGSDSEESEQPLRSLS
KGENEPHVLEQLLNAMNDDEKETFFSMFNVLMERACGSRSVPPKDGSGKG
SQGTLIGSSSTCNPAGSLNDSSGGFDCGEQQQETDSKREDIADTLEDLVQ
DMEELNLTYEQILSKLPRELADKFFDHLKEASFHETLKPWRPWWHVSRDD
DGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLR
LYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIEVVSKCYGR
EVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRAIKW
GTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERGRCEELRVAKRVVRL
VSIEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039646ZNHIT2