Gvermi12329.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12329.t1
Unique NameGvermi12329.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Homology
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BLAST of Gvermi12329.t1 vs. uniprot
Match: A0A2V3IZW3_9FLOR (Zinc finger protein Gfi-1b n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZW3_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-8
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 0 
Query:    1 MCHSSFARANHLRLHVRTIHEKAKPFACEQC 31
            MC S+FAR+++LRLHVRTIHEKAKPFACEQC
Sbjct:    1 MCASTFARSSYLRLHVRTIHEKAKPFACEQC 31
The following BLAST results are available for this feature:
BLAST of Gvermi12329.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZW3_9FLOR1.200e-883.87Zinc finger protein Gfi-1b n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 55..78
e-value: 0.066
score: 22.3
coord: 113..136
e-value: 0.0022
score: 27.3
coord: 26..49
e-value: 0.29
score: 20.2
coord: 84..107
e-value: 0.045
score: 22.9
coord: 1..20
e-value: 130.0
score: 3.4
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 113..136
e-value: 0.002
score: 18.5
coord: 84..107
e-value: 0.0065
score: 16.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 57..78
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 28..49
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 86..107
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 115..136
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 26..54
score: 10.117529
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 55..83
score: 14.398848
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..25
score: 9.722651
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 113..136
score: 11.322948
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 84..112
score: 11.800961
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 107..136
e-value: 6.1E-8
score: 34.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 83..106
e-value: 1.2E-6
score: 30.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 53..82
e-value: 1.3E-5
score: 27.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..49
e-value: 1.7E-9
score: 39.9
NoneNo IPR availablePANTHERPTHR24384FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATEDcoord: 48..136
coord: 2..104
NoneNo IPR availablePANTHERPTHR24384:SF207SI:CH211-161M3.1-RELATEDcoord: 48..136
coord: 2..104
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 78..131
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 34..93
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4236809..4237249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12329.t1Gvermi12329.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4236809..4237249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12329.t1 ID=Gvermi12329.t1|Name=Gvermi12329.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MCHSSFARANHLRLHVRTIHEKAKPFACEQCPATFGHVSSKYRHFRTVHL
KRRDFSCDRCGQTFAERSAVFKHCRTVHEGSRPYPCHICGFRFHFKLHLT
QHIATVHEKQRPHQCTVCGACFGQRSSLNRHSRQIHGLATKRVTPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf