Gvermi12320.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12320.t1
Unique NameGvermi12320.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Homology
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A2V3IZY5_9FLOR (Protein SYS1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZY5_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 2.450e-102
Identity = 151/196 (77.04%), Postives = 176/196 (89.80%), Query Frame = 0
Query:    1 MAVNGTFYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPREDPRRSDNGKHQSTDLEAAINHDSLQRPPSSAPDVESAALTQ 196
            MAVNGTFYGR+RFDP+LILAQIVLLQA FYTSYL+LLV+FNYATGTT SITDQ+FNHTYITLRHFPGW+TCTALLISA GPAA+AFVALVGRAKRC+DFACTLFISHIIAT+VHSGFPNT+MWWLLN +AT  L+T+GEA+SLRLELREIA+PR++P R+D  + Q TD+EAA+N D   RP SS+ + ++A L Q
Sbjct:    1 MAVNGTFYGRDRFDPILILAQIVLLQASFYTSYLLLLVMFNYATGTTASITDQMFNHTYITLRHFPGWVTCTALLISAAGPAAIAFVALVGRAKRCIDFACTLFISHIIATTVHSGFPNTIMWWLLNIVATAALSTVGEAVSLRLELREIAIPRDNPTRTDK-RDQPTDIEAALN-DHSSRPNSSSSNADAAVLAQ 194          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A7S0ZK56_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK56_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 1.300e-26
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 0
Query:    4 NGTFYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSG-FPNTLMWWLLNTIATMGLATIGEAISLRL-ELREIAVPREDPRRSDNGKHQSTDLEAAINHDSLQRPPSSAPD 188
            +G FYGRE F+P LIL  IVLLQ CFY SY +LL   N   G  +S+ +Q+F    +T    PGW T  + ++ + GP   A V  + RAK+C+D+  TL+I H +A + +SG  P    WW +  +    ++   E + LRL ++REI++        +N K  ST      N ++ +   +SAPD
Sbjct:   29 DGAFYGRESFNPWLILFHIVLLQFCFYISYSILLFTLNRMGGIQSSVVEQMFQPVLLTFSTIPGWFTICSFVLCSIGPYLTALVFFIRRAKKCLDYTVTLYIIHFVACTSYSGRIPTHWAWWFVIILTATIVSLSAEFLCLRLFDMREISLNTTQ----NNSKESSTS-----NSNAAKPTQASAPD 206          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A0A0KC23_CUCSA (Protein SYS1 homolog n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KC23_CUCSA)

HSP 1 Score: 91.7 bits (226), Expect = 4.270e-20
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQI--FNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI+AQIV LQ CFY  YL L ++     GT  S    +  F++  I++    GW    + L+SA   A    V L+ RAK+C+DFA TL+I H+    ++ G+P+++ WW++N    + ++ +GE + ++ ELREI + R
Sbjct:    2 FYGAVVWDPWLIVAQIVCLQ-CFY--YLTLGILLATLVGTRVSRISLVYFFDYATISVSTATGWCVIASFLLSAIAGAGY-LVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPITR 147          
BLAST of Gvermi12320.t1 vs. uniprot
Match: UPI00125D4387 (protein SYS1 homolog n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D4387)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 55/150 (36.67%), Postives = 87/150 (58.00%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQI--FNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI+AQIV LQ C Y  YL L +      GT  S    +  F++  +T+    GW   T+ ++S+   A    V ++ RAK+C+DFA TL++ H+  + V+ G+P++L WW++N      +A +GE + ++ ELREI + R
Sbjct:    2 FYGAVVWDPWLIVAQIVCLQ-CLY--YLTLGIFMAGLVGTRVSRISLVYFFDYASVTVSTNTGWCVITSFILSSIAGAGY-LVYVIERAKKCLDFASTLYVIHLFTSLVYGGWPSSLTWWVVNVTGFAVMALLGEYLCIKRELREIPISR 147          
BLAST of Gvermi12320.t1 vs. uniprot
Match: UPI001CB8A2EC (protein SYS1 homolog n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8A2EC)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-18
Identity = 51/150 (34.00%), Postives = 86/150 (57.33%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQI--FNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI+AQIV +Q  +Y +  V + +F    GT  S    +  F+   +TL    GW    + ++S+   A +  + L+ RAK+C+DFA TL+I H+    ++ G+P+++ WW++N      +A +GE + ++ ELREI + R
Sbjct:    2 FYGTVVWDPWLIVAQIVCIQCLYYITLGVFMGVF---VGTRVSKLSLVYFFDFATVTLSTVTGWCVIASFILSSVAGAGI-LLYLIERAKKCLDFAATLYIIHLFICILYGGWPSSITWWVVNGTGLAVMALLGEYLCIQRELREIPISR 147          
BLAST of Gvermi12320.t1 vs. uniprot
Match: UPI000D1D0037 (protein SYS1 homolog n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D0037)

HSP 1 Score: 88.6 bits (218), Expect = 1.640e-18
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAV 152
            FYG   +DP LI++QIV +Q   Y S   LL  F        ++    F+HT ++     GW   +A ++++   AA  FV LV RAK+C+DF+ T++I H++ +S++ GFP T+ WWLL        A +GE + LR ELR+I +
Sbjct:   40 FYGAAVWDPWLIVSQIVCIQCLSYVSLGALLWAFVGVQVPRFTL-HFFFDHTLLSFSSATGWCLISAFILNSLLVAAYLFV-LVERAKKCLDFSATVYIIHLVLSSIYGGFPLTVTWWLLMGTCLAVTALLGEWLCLRRELRDIPI 183          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A830CU09_9LAMI (Protein sys1 homolog n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CU09_9LAMI)

HSP 1 Score: 85.9 bits (211), Expect = 9.630e-18
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAV 152
            FYG   +DP LI+AQIV LQ  +Y S  + L I      T  S+    F+   +T     GW    ++ +S+   A    V LV RAK+C+DFA TL+I H+  +  + G+P ++ WW++N  +   +A +GE + +R ELREI +
Sbjct:    2 FYGTVAWDPWLIVAQIVCLQCLYYISLGLFLSILVGPRVTKMSLV-YFFDFATVTASTSTGWCVVASIFLSSIAGAGF-LVYLVERAKKCLDFAATLYIIHLFISFSYGGWPTSVTWWVVNITSLAVMALLGEYLCMRRELREIPI 145          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A6S7MXJ5_LACSI (Protein SYS1 homolog n=4 Tax=Lactuca TaxID=4235 RepID=A0A6S7MXJ5_LACSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-17
Identity = 51/150 (34.00%), Postives = 84/150 (56.00%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQI--FNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI+AQI+ +Q C Y  YL L        GT  S+   +  F++  I++    GW    + ++S+   A    + L+ RAK+C+DFA TL+I H+    ++ G+P ++ WW++N      +A +GE + ++ ELREI + R
Sbjct:    2 FYGSVVWDPWLIVAQIICIQ-CLY--YLTLGFFMAILVGTRVSMMSLVYFFDYATISISTVTGWCVIASFILSSVAGAGF-LLYLIERAKKCLDFAATLYIIHLFICIIYGGWPTSITWWIVNGTGLALMALLGEYLCIKRELREIPISR 147          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A2I4GMD2_JUGRE (protein SYS1 homolog isoform X1 n=10 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GMD2_JUGRE)

HSP 1 Score: 85.9 bits (211), Expect = 1.370e-17
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI+AQIV LQ  +Y +  V L +         S+ +  F++  +T     GW    + L S+   AA    +L+ RAK+C+DF+ T++I+H+    V+ G+P+++ WW+LN      +A +G  +  R ELREI + R
Sbjct:    2 FYGSVVWDPWLIVAQIVCLQCLYYLTLGVFLTMLVGNRVPRMSL-EYFFDYATVTASTVTGWCVIASFLFSSLAGAAY-MTSLIARAKKCLDFSATVYITHLFICIVYGGWPSSITWWVLNGTGIAVMALLGAYLCRRRELREIPITR 147          
BLAST of Gvermi12320.t1 vs. uniprot
Match: A0A0E0JKN8_ORYPU (Uncharacterized protein n=8 Tax=Poaceae TaxID=4479 RepID=A0A0E0JKN8_ORYPU)

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-17
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 0
Query:    7 FYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSITDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFACTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREIAVPR 154
            FYG   +DP LI++QIV LQ C Y   L LL+     T         +F+   +T R   GW    A L++A   AA   + ++ RAK+C+DFA TL+I H+    V+ G+P +  WW++N      ++ +GE + +R EL+EI + R
Sbjct:    2 FYGAMVWDPWLIVSQIVCLQ-CLYYLALGLLMALLVGTRVPRLTLLYLFDFATLTPRTTTGWCVIAAFLLAAAAGAAF-MLHVIERAKKCLDFAATLYIIHLFICIVYGGWPASFTWWVVNIAGLAIMSLLGEYLCIRRELKEIPISR 147          
The following BLAST results are available for this feature:
BLAST of Gvermi12320.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZY5_9FLOR2.450e-10277.04Protein SYS1-like n=1 Tax=Gracilariopsis chorda Ta... [more]
A0A7S0ZK56_9RHOD1.300e-2636.36Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A0A0KC23_CUCSA4.270e-2037.33Protein SYS1 homolog n=10 Tax=Cucurbitaceae TaxID=... [more]
UPI00125D43871.680e-1936.67protein SYS1 homolog n=2 Tax=Ipomoea TaxID=4119 Re... [more]
UPI001CB8A2EC1.300e-1834.00protein SYS1 homolog n=1 Tax=Erigeron canadensis T... [more]
UPI000D1D00371.640e-1837.67protein SYS1 homolog n=1 Tax=Selaginella moellendo... [more]
A0A830CU09_9LAMI9.630e-1836.30Protein sys1 homolog n=1 Tax=Phtheirospermum japon... [more]
A0A6S7MXJ5_LACSI1.010e-1734.00Protein SYS1 homolog n=4 Tax=Lactuca TaxID=4235 Re... [more]
A0A2I4GMD2_JUGRE1.370e-1734.46protein SYS1 homolog isoform X1 n=10 Tax=Juglandac... [more]
A0A0E0JKN8_ORYPU2.000e-1735.81Uncharacterized protein n=8 Tax=Poaceae TaxID=4479... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019185Integral membrane protein SYS1-relatedPFAMPF09801SYS1coord: 10..151
e-value: 1.5E-29
score: 103.0
IPR019185Integral membrane protein SYS1-relatedPANTHERPTHR12952SYS1coord: 7..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..198
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..40
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 116..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..115
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 103..125
NoneNo IPR availableTMHMMTMhelixcoord: 17..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4200965..4201561 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1Gvermi12320.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4200965..4201561 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MAVNGTFYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSI
TDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFA
CTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREI
AVPREDPRRSDNGKHQSTDLEAAINHDSLQRPPSSAPDVESAALTQPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019185Integral_membrane_SYS1-rel