Gvermi12305.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12305.t1
Unique NameGvermi12305.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length519
Homology
BLAST of Gvermi12305.t1 vs. uniprot
Match: A0A2V3IMQ2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMQ2_9FLOR)

HSP 1 Score: 562 bits (1448), Expect = 4.880e-195
Identity = 287/489 (58.69%), Postives = 364/489 (74.44%), Query Frame = 0
Query:   19 AFVYRTATNITWDSWVLSDPSAEETWSETAAAIETLKDGSSIVATDRQ-LHNSESVPNIYKIHPSQDVAWSMQSKLVKGSPFAMVINELFDVVYIVVSSSNLSGSDFQGHVLRFSGISSNGTSDDIGSKVSEAIFFTTESTQGATKLFDCAINSINGDVYVTGGTSGSLYEESRGKGDIIVVRLAPSGEVLNAVQFGNREDEFGRAIDISADGSEIVMAAHRGLEGGGSEALMYRLSAESLQILEGPQMLIEQGATPLFTVNDIAIGAPAIDGSVTTFMTGKALAIPDRDIDLFMHVFAVIKDDVSNVPVYIDGTSNGKGADQGVAVRVAKDGNAYCIGTSEAVDGARKILLLVISPTGQILLLKSLDGHESMNQQLKPTAMTLTQVSNRTTVRFVGYTQDQNGSRATFATVSPEIGAVRPFEGFGSIVEEAAVDDSGGNEDGSVQEKKG---FVMNKNMVIIICSAGVGALALTAILAMIVFLHASSR 503
            A+       + WDSWVL DP AEE WSE A A+E+L+ G SIV  DRQ   +S S P +YK+  SQ VAWS++SKLV GSPF + +NE+FD  Y++VSS+   GS+   HVLRFSGISSNG  + I S+V E++F+T  +  G TKLF CAINS+NGDVY+TGGTS SLY  S+GKGD+IV RLA SGEVL A+QFG   DEFGRAID++ D +EIV+A +R LE GGSEALMYRL   +L++ +GP+ML+  GA PLFTVNDIA+G PA D SVTTFMTGKAL IPDRD+D+F+H+FAV+ +D S VPVY+DG SNGKG DQGV++RV  DGNAYCIG++E+VDGAR+ LLLVISPTG+ILLL   +   +M Q  +PTA++LT+   RT VR+VGY +  NG+RA+F  V P  GA++PFEGFG +VEEAA   +G  ED ++ E+ G     +NKN +III S  VGALA+  I+AM+V  + SSR
Sbjct:    3 AYAEGLTEEVKWDSWVLEDPFAEEIWSERAVAVESLEGGDSIVVIDRQESQHSPSTPVLYKVTKSQQVAWSLRSKLVSGSPFGIAVNEMFDNAYVIVSSTKAGGSESDVHVLRFSGISSNGNPETIQSRVKESLFYTVGTANGVTKLFGCAINSVNGDVYLTGGTSSSLYGNSQGKGDVIVARLAASGEVLTAIQFGTANDEFGRAIDVNEDATEIVLAVNRNLEDGGSEALMYRLDPTTLELNDGPRMLVNYGAKPLFTVNDIALGRPAADRSVTTFMTGKALVIPDRDVDMFVHIFAVLPNDYSEVPVYVDGMSNGKGMDQGVSIRVGSDGNAYCIGSTESVDGARQALLLVISPTGRILLLTGREDGSNMTQLERPTAVSLTEEDGRTAVRYVGYMKGLNGNRASFGFVKPASGAIKPFEGFGEVVEEAA---AGNPEDNTITEENGESHVGLNKNTIIIIASTAVGALAVAGIVAMVVITYGSSR 488          
BLAST of Gvermi12305.t1 vs. uniprot
Match: A0A1Q7E7G1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium 13_1_40CM_66_11 TaxID=1805195 RepID=A0A1Q7E7G1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-6
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 0
Query:  155 TESTQGATKLFDCAINSINGDVYVTGGTSGSLYEESRGKGDIIVVRLAPSGEVLNAVQFGNREDEFGRAIDISADGSEIVMAAHRG-LEG---GGSEALMYRLSAESLQILEGPQMLIEQGATPLFTVNDIAIGAPAIDGSVTTFMTGKAL-AIPDRDIDLFMHVFAVIKDDVSNVPVYID--GTSNGKGADQGVAVRVAKDGNAYCIGTS 358
            T ST  A  +   A++++ G+VYV GGT GSL   ++G  D+ + R   SG  L+  QFG   D+FG  + +   G+  V    +G L G   G  +A + +  A   Q+       ++Q  T   + +D   G  A D     F+ G    A+P R I  F H F + K D +   +++    TS+ K A  GVAV V   GN Y  G++
Sbjct:  125 TSSTDVANSV---AVDAV-GNVYVVGGTGGSLGGANKGFADVFLARFDGSGVPLSFQQFGTNLDDFGNRVVVDGVGNVYVAGVTQGSLSGTNQGSYDAFLAKYDASDTQLW------LKQFGT---SFSDWPFGM-ATDAEGNVFVAGTTEGALPSRPIQSFAHAF-LAKYDGAGAQLWVQQLDTSSIKDA-LGVAVDVG--GNVYVAGST 317          
The following BLAST results are available for this feature:
BLAST of Gvermi12305.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMQ2_9FLOR4.880e-19558.69Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1Q7E7G1_9BACT2.800e-631.28Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..473
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 474..498
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 499..518
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availableTMHMMTMhelixcoord: 474..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4146167..4147723 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1Gvermi12305.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4146167..4147723 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=519bp
MIRASPFVLFLCLQVYCTAFVYRTATNITWDSWVLSDPSAEETWSETAAA
IETLKDGSSIVATDRQLHNSESVPNIYKIHPSQDVAWSMQSKLVKGSPFA
MVINELFDVVYIVVSSSNLSGSDFQGHVLRFSGISSNGTSDDIGSKVSEA
IFFTTESTQGATKLFDCAINSINGDVYVTGGTSGSLYEESRGKGDIIVVR
LAPSGEVLNAVQFGNREDEFGRAIDISADGSEIVMAAHRGLEGGGSEALM
YRLSAESLQILEGPQMLIEQGATPLFTVNDIAIGAPAIDGSVTTFMTGKA
LAIPDRDIDLFMHVFAVIKDDVSNVPVYIDGTSNGKGADQGVAVRVAKDG
NAYCIGTSEAVDGARKILLLVISPTGQILLLKSLDGHESMNQQLKPTAMT
LTQVSNRTTVRFVGYTQDQNGSRATFATVSPEIGAVRPFEGFGSIVEEAA
VDDSGGNEDGSVQEKKGFVMNKNMVIIICSAGVGALALTAILAMIVFLHA
SSRNPGGEASRRPLDSTI*
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