Gvermi12302.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12302.t1
Unique NameGvermi12302.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length441
Homology
BLAST of Gvermi12302.t1 vs. uniprot
Match: A0A2V3J5Y6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Y6_9FLOR)

HSP 1 Score: 355 bits (912), Expect = 2.380e-116
Identity = 192/342 (56.14%), Postives = 231/342 (67.54%), Query Frame = 0
Query:    1 MGFLGFDLVYELQVELGWEKEFATAARKEYLRYLELRAKAQDHRACKLTPSRVIAIVWNLHRQWTVDYENTCAALGGYIHHYPPAMRLGLPSEQTYANTVEMYKTHFNENPPDAYWGLPICSTKPSSSNVDYLSPLKVADRTDALIQPGTKLKRRSQAVGSSRVLAPAMARTIDATNPTASVAMGHT------------KSEPKSPTSKRTSGTIRVRQGYVLRPMPPGEKRKRGRPSMSEYIPAAQATSQLQDYVGNATPLEGPIKPATSGAVSVPGRGSAAMLKSRR------QQGKPLDAKDVNVN--GRTASDVPAAAAMFKRPRGRPRKDGSWPVPR 322
            MG+LGFDLVYELQVELGWEKEFA AARKEY+RYLELR KAQD   CKLTPSRVIAIVW+LHRQWT DYENTC+ALGG+IHHYPP MR+G  SE+TYA TVE+YK+HFNE+PPD+YWG PIC+   S+S+ DYLS L +    D       + +RRS    +    A A+  ++ + +P  S A+ H             K E K    K+ +   RV+QGYVLRP+PPGEKRKRGRPSMSEYIP +QA+  + + +     +E   K   SGAVSVPGRGSAA++KSRR        G  L+A+D+N    G       AAA M KRPRGRPRKD SW V R
Sbjct:    1 MGYLGFDLVYELQVELGWEKEFAVAARKEYMRYLELRVKAQDFHTCKLTPSRVIAIVWSLHRQWTADYENTCSALGGFIHHYPPVMRMGFASERTYAATVELYKSHFNESPPDSYWGAPICAK--SASSTDYLSSLHMPPNADMPSHAHGRTRRRSPTAAA----AVAVRSSVPSADPVMS-AVQHPQVHHPEANAAAIKPETKPVKQKKITRVSRVQQGYVLRPLPPGEKRKRGRPSMSEYIPVSQASEYMPEIMATVPAVEAQAKSPGSGAVSVPGRGSAAIVKSRRLHENNKNHGAVLEAQDINGQTVGEATGSATAAAVMMKRPRGRPRKDTSWAVAR 335          
BLAST of Gvermi12302.t1 vs. uniprot
Match: R7Q8G6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8G6_CHOCR)

HSP 1 Score: 205 bits (521), Expect = 3.800e-55
Identity = 147/430 (34.19%), Postives = 195/430 (45.35%), Query Frame = 0
Query:    7 DLVYELQVELGWEKEFATAARKEYLRYLELRAKAQDHRACKLTPSRVIAIVWNLHRQWTVDYENTCAALGGYIHHYPPAMRLGLPSEQTYANTVEMYKTHFNENPPDAYWGLPICSTKPSSSN--VDYL---------------SPLKV-ADRTDALIQPGTKLKRRSQAVGSSRVLAPAMARTIDATNPTASVAMGHTKSEPKSPTSK------------------RTSGTIRVRQG-----YVLRPMPPGEKRKRGRPSMSEYIPAAQATSQLQDYVGNATPLEGPIKPATSG----------------AVSVPGRG---SAAMLKSRRQQGKPL-------DAKDVNVNGRTASDVPAAAAM-------------------FKRPRGRPRKDGSWPVPR-------TRPGPVMKQKIEPITSADAQM 343
            DLVYELQVELGW   FA  A  EY+R+L LR ++ D   CK  PSR +  VW LHRQWT DYE TC++LGG++HH+PPAMR+ +  E+ YA T+  YK  F E+PP ++WG  IC+ KP +SN   + L               SP K  A    A I P    +  ++A  ++      +  T D + P+   A    +S   +  SK                  R+ G  R R       Y+L+P+ PGEKRKRGRPS ++Y+    A+S         T    P  P   G                A S PG+    S A+ K  R   KP        +A  +    +TAS  P +                       KRPRGRPRKDGSWPVPR       T+P   + QK      AD ++
Sbjct:    7 DLVYELQVELGWSPHFAATAHSEYMRWLRLRTQSGDFEYCKFPPSRAVGTVWGLHRQWTHDYEKTCSSLGGFVHHFPPAMRMNIAREEAYAATLHTYKALFGEDPPSSHWGPAICTYKPLASNGVTNMLLASKDPPRALPSLRRSPTKRDASNHSAPITPTKGKRATTEARRATSAKTTGIGNTTDRSRPSVEGARAQRRSPKTTKDSKKNDPSSSEAIMEDADQAPRSPGRPRKRFSGPSPLYILKPLRPGEKRKRGRPSFADYV---LASSLSLSQASGETKKRDPKSPTEKGTASKLTGATQSLRRRKATSSPGKTASPSPAIAKKERTH-KPFRRVARWSEASRIGDFNKTASTNPTSVVQTSSGDQSNNGQPKKGAPGPLKRPRGRPRKDGSWPVPRVRKPEAATKPAAAVPQKSTIKADADGKV 432          
The following BLAST results are available for this feature:
BLAST of Gvermi12302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J5Y6_9FLOR2.380e-11656.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q8G6_CHOCR3.800e-5534.19Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 274..285
score: 24.65
coord: 219..229
score: 51.89
coord: 304..314
score: 61.74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..440
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..419
IPR000637HMG-I/HMG-Y, DNA-binding, conserved sitePROSITEPS00354HMGI_Ycoord: 303..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4139891..4141213 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12302.t1Gvermi12302.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4139891..4141213 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=441bp
MGFLGFDLVYELQVELGWEKEFATAARKEYLRYLELRAKAQDHRACKLTP
SRVIAIVWNLHRQWTVDYENTCAALGGYIHHYPPAMRLGLPSEQTYANTV
EMYKTHFNENPPDAYWGLPICSTKPSSSNVDYLSPLKVADRTDALIQPGT
KLKRRSQAVGSSRVLAPAMARTIDATNPTASVAMGHTKSEPKSPTSKRTS
GTIRVRQGYVLRPMPPGEKRKRGRPSMSEYIPAAQATSQLQDYVGNATPL
EGPIKPATSGAVSVPGRGSAAMLKSRRQQGKPLDAKDVNVNGRTASDVPA
AAAMFKRPRGRPRKDGSWPVPRTRPGPVMKQKIEPITSADAQMSTESDQP
PTSAQPIAVQDSTDQTPKGTSGDEAGKGEEMAQRVATGSGDNEMIDVSEN
AQKKELVSTPQSSPTHLVPQATMPAAAPQPMETDKGPTAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR000637HMGI/Y_DNA-bd_CS