Gvermi12287.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12287.t1
Unique NameGvermi12287.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length261
Homology
BLAST of Gvermi12287.t1 vs. uniprot
Match: A0A2V3IUW7_9FLOR (NADH-cytochrome b5 reductase 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUW7_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 3.810e-106
Identity = 152/254 (59.84%), Postives = 192/254 (75.59%), Query Frame = 0
Query:    7 RTIRQMRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAPDMSLSFKHTEHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGTSEWLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCAREELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEGWAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGYTRKAHALSRKRIKS 260
            R + ++RPLPPF SYPLIAKKTLVP S E G+LPVR FTFAY  D+SLSF+   H+K++RPGP+KPRSYTPTS++ R GSFDL +KIYPGG SEWLD  +IG RV + GPLPL  K  VY PGPFVVV+ALGIG+T G++ A+ EL  +  VTL+YS+R +EEAIFG E+++L+Q YP  F ++M ASRE VEGW HG + + L+ + +    + D RF+VVGTK+MMKS+W  L  MGY +  HAL RKR KS
Sbjct:    5 RRLHRIRPLPPFGSYPLIAKKTLVPHSAENGVLPVRTFTFAYPSDVSLSFEPAHHLKLVRPGPYKPRSYTPTSDAYREGSFDLTIKIYPGGNSEWLDNVSIGDRVTMIGPLPLPFKAKVYKPGPFVVVVALGIGITLGYIGAKRELDRNGFVTLVYSIRRKEEAIFGDELDELKQKYPDRFEIKMIASREHVEGWQHGRLTEDLMHQFIPDAPKDDIRFLVVGTKQMMKSIWSILRGMGYNQAEHALIRKRFKS 258          
BLAST of Gvermi12287.t1 vs. uniprot
Match: A0A812I5S6_9DINO (Cyb5r1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I5S6_9DINO)

HSP 1 Score: 106 bits (265), Expect = 2.660e-24
Identity = 78/234 (33.33%), Postives = 119/234 (50.85%), Query Frame = 0
Query:   12 MRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAPDMSLSFKHTEH-----VKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGT-SEWLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCAREELG-----CDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEGWAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMM 234
            M+P+  F  + L+AK+TL     E+G  PVR FTF      SL     +      V++   G    RSY+P S   R GSFDL +KIYPGG  S  LD  A+G +  + GP P+       N    V +IA G+G+T+    AR +L       +R+V L++  +   +  +  E+++L Q +P  F +    SRE  EG     +D  L++   G +A +   F+VVGTK+++
Sbjct:    3 MKPMRQFRPFELLAKETLAE-GGEEGF-PVRRFTFQLPEGCSLESLGFDMGLGDCVQVSAAG--SVRSYSPVSPGQRAGSFDLAVKIYPGGQCSGHLDSLAVGDQAMISGPAPVPWLAHALNQQQHVGLIAFGVGITEALPVARSQLAKPVDVVERVV-LLWGNKTWMDVFWQEELQELAQQHPGRFQVVFALSREDHEGCVRSRIDPPLLQSTFGDFAPT-AGFLVVGTKQIL 230          
BLAST of Gvermi12287.t1 vs. uniprot
Match: A0A812YH42_SYMPI (Mcr1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YH42_SYMPI)

HSP 1 Score: 96.7 bits (239), Expect = 4.010e-20
Identity = 73/234 (31.20%), Postives = 111/234 (47.44%), Query Frame = 0
Query:   12 MRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAPDMSLS-----FKHTEHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGT-SEWLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKG----WVCAREELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEGWAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMK 235
            M+PL  F  + LI K+TL   S +    P+R FTF      SL          + V++ RP   + RSY+P S + RTGSFDLV+KIY GG  S  LD   +G    + GP P+            V +IA G+G+T+     W    + +     V L++  +   +  +  ++++L Q +   F +    SRE  EG     +D  L+      + +S   F+VVGTK+M K
Sbjct:    1 MKPLRQFRPFKLIGKETLAEGSEDS--FPIRRFTFELPEGTSLQSLGFDLGSGDFVQV-RPPAGRVRSYSPASPADRTGSFDLVVKIYRGGRCSGHLDSLEVGDSAMISGPAPVPWLAFTLKQQKHVGLIAFGVGITEALPVAWSQLLKPIDIVERVILLWGNKTWMDVFWQEQLQELVQQHAGRFQVVHALSREHREGCVRSRIDQPLLDTTFQAFPRS-AAFLVVGTKQMKK 230          
BLAST of Gvermi12287.t1 vs. uniprot
Match: A0A485LLI1_9STRA (Aste57867_22774 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLI1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.680e-16
Identity = 72/254 (28.35%), Postives = 115/254 (45.28%), Query Frame = 0
Query:    6 SRTIRQMRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAPDM-SLSF-KHTEHVKIMRPGPF-KPRSYTPTSESSRTGSFDLVLKIYPGGT-SEWLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCAREELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHF---------TLQMNASREQVEGWAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGY 246
            S +IR M+    F  + L+ +  L+  +       +   TFA      +L F +   H+K+ RP  +   ++Y+ TS+    G F +V+K+Y GG  S +     +G    V   L   + P  +     V +IA GIG+T+  V A   L   R VTL+++ R+  EAIF  +++ L+  YP  F         T   N S  +      G VD   I+   G +     RF+V+GTK MM+  +  L   G+
Sbjct:   21 STSIRHMQAGLAFQPFKLVDRTQLLQGNDSDPYSAIVQLTFALPVTTDTLGFGQPCTHIKVRRPDSYLASKAYSVTSQPDEAGVFKIVVKLYRGGLMSNYFTQLPVGDAAYVAKTLTKVLMPSTH-----VGLIAFGIGITEMLVSAEALLAEGRNVTLVHATRHLREAIFVDDIDALRVKYPAQFKMVHMVSRHTEDTNQSPTEESNVRKGRVDMKTIQDEFGTWLPETARFLVIGTKTMMRETYAMLASQGF 269          
BLAST of Gvermi12287.t1 vs. uniprot
Match: A0A7S0GAU5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAU5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.460e-15
Identity = 65/213 (30.52%), Postives = 105/213 (49.30%), Query Frame = 0
Query:   60 EHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGG-TSEWLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCAREEL--GCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVE------GWAHGHVDDALIRKC-------VGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGYTRKAHALSRK 256
            E VK++ P  +KP+SY+ ++  +    FD+ LKIYP G  S +LD   IG  V  FG      +    NPG F   IA G+G+T+    AR EL  G    V ++++ R + +  +  ++ +L+ +Y   F +    SRE+ E      G   G +D +L+++           + + D RF+V+GTK MM+     L  +G+      L RK
Sbjct:   16 EVVKMVIPN-YKPKSYSMSALRAEESEFDVTLKIYPNGRASGYLDRIQIGETVNAFGLRNEKTR----NPGKFFGGIAYGVGITEILPMARFELEKGDAERVVVLWASRTKADTFWDDQIAELETTYKDKFEMVYLFSREKEESNCAEVGALQGRIDASLLKQVFEPRITTTAGFERKDARFLVIGTKAMMRMTDDMLTEIGFPMPRQCLLRK 223          
The following BLAST results are available for this feature:
BLAST of Gvermi12287.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IUW7_9FLOR3.810e-10659.84NADH-cytochrome b5 reductase 2 n=1 Tax=Gracilariop... [more]
A0A812I5S6_9DINO2.660e-2433.33Cyb5r1 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812YH42_SYMPI4.010e-2031.20Mcr1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A485LLI1_9STRA1.680e-1628.35Aste57867_22774 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0GAU5_9STRA1.460e-1530.52Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039261Ferredoxin-NADP reductase (FNR), nucleotide-binding domainGENE3D3.40.50.80coord: 127..252
e-value: 6.2E-16
score: 60.3
IPR039261Ferredoxin-NADP reductase (FNR), nucleotide-binding domainSUPERFAMILY52343Ferredoxin reductase-like, C-terminal NADP-linked domaincoord: 131..249
IPR001433Oxidoreductase FAD/NAD(P)-bindingPFAMPF00175NAD_binding_1coord: 153..237
e-value: 7.8E-10
score: 39.4
IPR008333Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domainPFAMPF00970FAD_binding_6coord: 41..117
e-value: 9.7E-10
score: 38.7
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 18..117
e-value: 9.3E-11
score: 43.7
IPR001834NADH:cytochrome b5 reductase-likePANTHERPTHR19370NADH-CYTOCHROME B5 REDUCTASEcoord: 17..249
IPR017927FAD-binding domain, ferredoxin reductase-typePROSITEPS51384FAD_FRcoord: 16..123
score: 11.27436
IPR017938Riboflavin synthase-like beta-barrelSUPERFAMILY63380Riboflavin synthase domain-likecoord: 41..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4099572..4100354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1Gvermi12287.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4099572..4100354 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=261bp
MEDVPSRTIRQMRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAP
DMSLSFKHTEHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGTSE
WLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCARE
ELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEG
WAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGYTRKA
HALSRKRIKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039261FNR_nucleotide-bd
IPR001433OxRdtase_FAD/NAD-bd
IPR008333Cbr1-like_FAD-bd_dom
IPR001834CBR-like
IPR017927FAD-bd_FR_type
IPR017938Riboflavin_synthase-like_b-brl