Gvermi12267.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12267.t1
Unique NameGvermi12267.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Homology
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A2V3J0G0_9FLOR (Polyadenylate-binding protein-interacting protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0G0_9FLOR)

HSP 1 Score: 481 bits (1237), Expect = 3.770e-166
Identity = 277/416 (66.59%), Postives = 329/416 (79.09%), Query Frame = 0
Query:    1 MQHGAHDQSGIHPKSVVQSENATANATVSYVTSNFNALSF-ADNP----FYSPHPFCNNLQQTYS----PYGHNPP-FEPSQLTQPDFDNTSHDPLQSYPYSYVQHPSDAQSHEFFQPANPVSSPPKSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXXXXXETTVEHAVENFERQFPPLPGSKTSPDDKGKPVLRKALGWHEIEYEKREKEKWQKHMDVQKNIIQTLQLVNESGEEQEETAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPPHVHDVIDLHGLHVNEAIERLPSALEGKHGRVRILTGTGHHTKGTGRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDIENR 406
            MQ  AHDQ  I+   V+ +++      + Y+  + NALSF  D P     Y+P+ + NN Q  +S    P    P  ++P Q      D T   P  +YP     + S +Q+    QP     +P KSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXXXXXETTVEHAV+NFERQFPPLPGSK SP++  KPVLRKALGWHE+E+E+REK +W++H+D QKN +Q LQ V+E+ +  E+ APV+GDVGNVWVSTG+SVAELYEELRAEAA+QASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMK+LHR+AA+AIFA RNPPHVHDVIDLHGLHV+EAIERLP+ALE K G++RILTGTGHHTKGTGRARLRPAVKKWLQ+N++FFEEV+DANE+VGSF+VD++ R
Sbjct:    1 MQPRAHDQRRINQAPVIPTDDVDDYPAIDYLNDSLNALSFNTDIPQQHHLYNPYSYYNNYQGAFSTQPEPNASAPVHYQPQQFEALPSDFT---PFAAYPTDKAPYISRSQNP--VQPTVEPRTPTKSTLNAHAPEFVPSFAVLPAEEPXXXXXXXXXXXXXXXXXETTVEHAVQNFERQFPPLPGSKNSPEETKKPVLRKALGWHELEHEQREKVRWERHLDEQKNFLQALQSVSEATDVDEDIAPVTGDVGNVWVSTGQSVAELYEELRAEAAQQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKELHRQAADAIFAKRNPPHVHDVIDLHGLHVSEAIERLPAALEDKAGKIRILTGTGHHTKGTGRARLRPAVKKWLQENEFFFEEVIDANEYVGSFVVDLKKR 411          
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A7S3EKS9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKS9_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 1.160e-36
Identity = 81/160 (50.62%), Postives = 112/160 (70.00%), Query Frame = 0
Query:  246 WVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPPHVHD-VIDLHGLHVNEAIERLPSALEG--KHGRVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIV 401
            WV TG SV+ELY+  R EA++ A +RN+ F +AAAA    +GA A +  + GR  N +MK+ H  AA+AIF +RNP  +    +DLHGLHV EAIERL   LEG  KH  VRILTG+GHH++G  G  RL+PAV ++L+D+ Y +EE+ D+N++VG++ V
Sbjct:  204 WVETGESVSELYKRYREEASDLARLRNQCFAQAAAAASAGNGAAAHQQASKGRAYNLKMKEKHALAADAIFRSRNPQGIAGGQLDLHGLHVKEAIERLDLELEGATKHSTVRILTGSGHHSRGIHGAPRLKPAVGRYLRDSGYQYEEIADSNKYVGAYRV 363          
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.070e-28
Identity = 80/173 (46.24%), Postives = 102/173 (58.96%), Query Frame = 0
Query:  229 GEEQEETAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPPHV---HDVIDLHGLHVNEAIERLPSALEGKHGR----VRILTGTGHHTKG-TGRARLRPAVKKWLQDNDYFFEEVVDAN 393
            G+E+   A V G  G  WVSTG +V + YE+ R +AAE A  RNK+F  A  AF+R DG  A+ +   GRE N RMK+ HR+AA  IF  RNP         +DLHGLHV EA+E L   +     R    VR+LTGTGHH+KG T +ARL PAV+ +     Y F +V D +
Sbjct:  461 GDERYPPAVVGG--GGEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFQRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPGDQVFQRKTMDLHGLHVAEAVEVLDREMGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQS 631          
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A2P4XU03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU03_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.900e-27
Identity = 76/170 (44.71%), Postives = 102/170 (60.00%), Query Frame = 0
Query:  242 VGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIERLPSALE--GKHG--RVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            +G  WVSTG+SVA  Y ELR +A + A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP   ++  ++DLHGLHV EA+E L   L   G  G   + ++TG+GHH+KG  G ARL PAV+++L    Y F  V D   FVG  +VD+
Sbjct:  233 IGTKWVSTGQSVATQYLELREQAYQMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNTKMKHFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLTHMLPKLGDEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQFTPVADGAGFVGMLLVDL 402          
BLAST of Gvermi12267.t1 vs. uniprot
Match: G4ZFB7_PHYSP (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4ZFB7_PHYSP)

HSP 1 Score: 124 bits (311), Expect = 2.580e-27
Identity = 75/173 (43.35%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  239 SGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIE----RLPSALEGKHGRVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            S  +G  WVSTG+SVA  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK+ H  AA+ IF +RNPP   ++  ++DLHGLHV EA+E     LP   +     + ++TG+GHH+KG  G ARL PAV+++L    Y +  V D   FVG  +VD+
Sbjct:  428 SEGIGTKWVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNVKMKNFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADESVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGAGFVGMLLVDL 600          
BLAST of Gvermi12267.t1 vs. uniprot
Match: D0MT46_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 122 bits (307), Expect = 8.480e-27
Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = 0
Query:  243 GNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIE----RLPSALEGKHGRVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            G  WVSTG+SVA  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK+ H  AA+ IF +RNPP   ++  ++DLHGLHV EA+E     LP   +     + ++TG+GHH+KG  G ARL PAV+++L    Y +  V D + FVG  +VD+
Sbjct:  426 GPKWVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKNFHFLAASEIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLAQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGSGFVGMLLVDL 594          
BLAST of Gvermi12267.t1 vs. uniprot
Match: M2XTE2_GALSU (MutS family DNA mismatch repair protein MSH4 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XTE2_GALSU)

HSP 1 Score: 122 bits (306), Expect = 2.300e-26
Identity = 84/200 (42.00%), Postives = 111/200 (55.50%), Query Frame = 0
Query:  216 KNIIQTLQLVNESGEEQ-----EETAPVSGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPPHVHDVIDLHGLHVNEAI---ERLPSALEGKHGR-----VRILTGTGHHTKGTGR-ARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIV 401
            K +  T QL   S ++      +E     G   N+WVSTG +V +LYE+ R +A E AS+RN+ F +AA A    +   A      G E N+ MK LH +AA+AIF  RN  +   VIDLHGLHV EAI   ER    LE +        V I+TG+GHHTKG    ARL PAV+ +L    Y FE + D N++ G+F+V
Sbjct: 1069 KPVHTTKQLTERSNKKSTMDISKEIRLDKGTTKNIWVSTGTTVGDLYEKSRLQAKELASLRNQMFMQAARAASNGNKRAASDYARRGHEYNQIMKQLHEEAADAIFTERNS-NADFVIDLHGLHVKEAIVILERKFQELESRRSNESFQDVIIVTGSGHHTKGKKTPARLYPAVEHFLLSRHYSFEVLKDTNKYAGAFLV 1267          
BLAST of Gvermi12267.t1 vs. uniprot
Match: H3GJW5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJW5_PHYRM)

HSP 1 Score: 120 bits (302), Expect = 3.910e-26
Identity = 73/173 (42.20%), Postives = 102/173 (58.96%), Query Frame = 0
Query:  239 SGDVGNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIE----RLPSALEGKHGRVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            S  +G  WVSTG SV+  Y ELR +A E A  RNK F  A  A++  + A AK +   G + N +MK+ H  AA+ IF +RNPP   ++  ++DLHGLHV EA+E     LP   +     + ++TG+GHH+KG  G ARL PAV+++L    Y +  V D   FVG  +VD+
Sbjct:  423 SDSIGTKWVSTGDSVSTQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHDYNAKMKNFHFLAASEIFESRNPPSQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLGGEGYQYTPVADGAGFVGMLLVDL 595          
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A3M6VB56_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.140e-26
Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = 0
Query:  246 WVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIE----RLPSALEGKHGRVRILTGTGHHTKGT-GRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            WVSTG++VA  Y ELR +A E A  RNK F  A  A++  + A AK +   G E N +MK  H  AA+ IF +RNPP   ++  ++DLHGLHV EA+E     LP   +     + ++TG+GHH+KG  G ARL PAV+++L    Y F  V D   FVG  +VD+
Sbjct:  429 WVSTGQAVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKHFHFLAASDIFESRNPPNQLYMDRMMDLHGLHVAEAVEFLIQMLPKLADEGVDEIYVVTGSGHHSKGPHGNARLLPAVERFLAAEGYQFTPVADGAGFVGMLLVDL 594          
BLAST of Gvermi12267.t1 vs. uniprot
Match: A0A2D4CHX0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHX0_PYTIN)

HSP 1 Score: 120 bits (300), Expect = 7.490e-26
Identity = 72/169 (42.60%), Postives = 99/169 (58.58%), Query Frame = 0
Query:  243 GNVWVSTGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREANERMKDLHRKAANAIFATRNPP---HVHDVIDLHGLHVNEAIERL----PSALEGKHGRVRILTGTGHHTKG-TGRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFIVDI 403
            G  W+STG +V+  Y +LR EA E A  RNK F  A  A++  + + A+ +   G E NE+MK  H  AA+ IF  RNP    +   ++DLHGLHV EA+E L    PS  +     + ++TG+GHH+KG TG  RLRPAV+++L    Y F  V D   FVG  +VD+
Sbjct:  437 GRRWLSTGAAVSAQYTQLREEAYELACARNKCFMNATRAYRSGNKSLARSLSQQGHEYNEKMKQCHYDAASRIFEMRNPRQQLYEDHLMDLHGLHVAEAVELLANLLPSLSDDGIEAIYVVTGSGHHSKGPTGNPRLRPAVERFLATEGYQFSPVADRQGFVGMLLVDL 605          
The following BLAST results are available for this feature:
BLAST of Gvermi12267.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0G0_9FLOR3.770e-16666.59Polyadenylate-binding protein-interacting protein ... [more]
A0A7S3EKS9_9RHOD1.160e-3650.63Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A6H5JKG2_9PHAE2.070e-2846.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XU03_9STRA1.900e-2744.71Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G4ZFB7_PHYSP2.580e-2743.35Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
D0MT46_PHYIT8.480e-2743.79Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
M2XTE2_GALSU2.300e-2642.00MutS family DNA mismatch repair protein MSH4 isofo... [more]
H3GJW5_PHYRM3.910e-2642.20Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3M6VB56_9STRA7.140e-2643.98Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2D4CHX0_PYTIN7.490e-2642.60Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013899Domain of unknown function DUF1771SMARTSM01162DUF1771_2coord: 256..321
e-value: 2.0E-17
score: 73.9
IPR013899Domain of unknown function DUF1771PFAMPF08590DUF1771coord: 257..320
e-value: 2.4E-16
score: 59.8
IPR002625Smr domainSMARTSM00463SMR_2coord: 325..404
e-value: 2.5E-7
score: 40.4
IPR002625Smr domainPFAMPF01713Smrcoord: 328..389
e-value: 4.0E-10
score: 39.9
IPR002625Smr domainPROSITEPS50828SMRcoord: 328..404
score: 19.124928
IPR009818Ataxin-2, C-terminalPFAMPF07145PAM2coord: 116..131
e-value: 1.1E-5
score: 24.7
NoneNo IPR availableGENE3D3.30.1370.110coord: 304..403
e-value: 4.3E-21
score: 76.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..87
NoneNo IPR availablePANTHERPTHR46651:SF1POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7coord: 241..388
NoneNo IPR availablePANTHERPTHR46651POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7coord: 241..388
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 326..388

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4058712..4059932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12267.t1Gvermi12267.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4058712..4059932 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12267.t1 ID=Gvermi12267.t1|Name=Gvermi12267.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MQHGAHDQSGIHPKSVVQSENATANATVSYVTSNFNALSFADNPFYSPHP
FCNNLQQTYSPYGHNPPFEPSQLTQPDFDNTSHDPLQSYPYSYVQHPSDA
QSHEFFQPANPVSSPPKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYNPP
PQFTPPETTVEHAVENFERQFPPLPGSKTSPDDKGKPVLRKALGWHEIEY
EKREKEKWQKHMDVQKNIIQTLQLVNESGEEQEETAPVSGDVGNVWVSTG
RSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGREA
NERMKDLHRKAANAIFATRNPPHVHDVIDLHGLHVNEAIERLPSALEGKH
GRVRILTGTGHHTKGTGRARLRPAVKKWLQDNDYFFEEVVDANEFVGSFI
VDIENR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013899DUF1771
IPR002625Smr_dom
IPR009818Ataxin-2_C
IPR036063Smr_dom_sf