Gvermi12261.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12261.t1
Unique NameGvermi12261.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length157
Homology
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BLAST of Gvermi12261.t1 vs. uniprot
Match: A0A2V3IEG3_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEG3_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 4.240e-7
Identity = 55/157 (35.03%), Postives = 77/157 (49.04%), Query Frame = 0 
Query:    1 MDTTSRKLLPKPIGPFKVLRASSHTVTIDREGLEDIFSVDRVSHVPTASTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEEVSADPTVGPANDYAP----LDKIDP-PKDFYLPLETADSVGETDLPMDFAPLDSMDLPEE 152
            ++  +RKLLP+  GP++VL ++SHTVTI+ +GL+D  ++DR++  P    P       XXXXXXXXX                            +++ ADP V P     P     D + P P+D     E+ D V       D+APLD MDLPEE
Sbjct:   66 IEVITRKLLPRSTGPYQVLSSTSHTVTIEIDGLQDTVAIDRITAAPEPPKPTGSPLDNXXXXXXXXXNSALQDSTHTNEQPSSRS----------KKLMADPLVNPTATSPPKVISADPLPPSPQD-----ESNDGVPSQSANDDYAPLDEMDLPEE 207
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BLAST of Gvermi12261.t1 vs. uniprot
Match: A0A2V3J488_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J488_9FLOR)

HSP 1 Score: 57.4 bits (137), Expect = 7.600e-7
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    2 DTTSRKLLPKPIGPFKVLRASSHTVTIDREGLEDIFSVDRVSHVPTAS 49
            +  + KL+P+  GP++V++++ HTVTIDR+GL+DI S DRVS  P  S
Sbjct:  119 EDIAAKLVPRSTGPYRVIKSTGHTVTIDRDGLQDILSTDRVSMAPRPS 166
The following BLAST results are available for this feature:
BLAST of Gvermi12261.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEG3_9FLOR4.240e-735.03Chromo domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3J488_9FLOR7.600e-750.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4015798..4016268 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12261.t1Gvermi12261.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4015798..4016268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12261.t1 ID=Gvermi12261.t1|Name=Gvermi12261.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=157bp
MDTTSRKLLPKPIGPFKVLRASSHTVTIDREGLEDIFSVDRVSHVPTAST
PPLPRTSPVEPLAPPSGDATTPNGSTPKAGNVSSSGNASSSGMAPEEVSA
DPTVGPANDYAPLDKIDPPKDFYLPLETADSVGETDLPMDFAPLDSMDLP
EEVLPK*
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