Gvermi12256.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12256.t1
Unique NameGvermi12256.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Homology
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BLAST of Gvermi12256.t1 vs. uniprot
Match: A0A2V3J060_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J060_9FLOR)

HSP 1 Score: 229 bits (584), Expect = 3.960e-70
Identity = 115/202 (56.93%), Postives = 145/202 (71.78%), Query Frame = 0 
Query:    3 VLPATQYAFRQATQELNTVAFPSAIRTLASVVASITMIVTIYLGYRKCMRGRDDSFTAGRQQQQSLGIPLASYDAPGRTLSDEYLPVYVGNGRYIYVSRNELPRDPPNVLRRDSNVPPRFDTSVLKKFEAANEERHQSCPICLEQLHEEPVSAGQCLHLMHNSCLVSWLNKDANSNCPVCRVRIMESASFDGLGAKVTELVS 204
            +L   +   RQ+  ++ + +FP+AIRTLASVVAS+TM+VTIYLGY+KC R R DSF A R+++ + G PL S D  G    ++ +PVYVG GRY+Y+SR+E+PR P +V+R +S   PRFD   LK FEA   ER Q+C ICLEQL EE VSAGQCLHLMH +CL SWL KD NSNCPVCRVRI ESAS + LG +   + S
Sbjct:    4 LLTVQRLVSRQSAVDVGSTSFPAAIRTLASVVASVTMVVTIYLGYKKCFRNRLDSFEAERRREAAHGFPLTSLDQ-GSNGFEDLVPVYVGEGRYMYISRDEIPRRPQHVVRVNSVHSPRFDADSLKIFEAGPSERQQACAICLEQLEEETVSAGQCLHLMHTNCLASWLRKDINSNCPVCRVRIFESASLESLGERAVGIPS 204
[Close]
BLAST of Gvermi12256.t1 vs. uniprot
Match: A0A2V3J0E8_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 70.5 bits (171), Expect = 3.670e-11
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0 
Query:  120 PRFDTSVLKKFEAANEERHQSCPICLEQLHEEPVSAGQCLHLMHNSCLVSWLNKDA 175
            PR D   L  F+A  +E++  CPICL  L +E VS GQCLHL+H SCL SWL KD+
Sbjct:   56 PRIDVDDLLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKDS 111
[Close]
BLAST of Gvermi12256.t1 vs. uniprot
Match: A0A2V3J043_9FLOR (Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J043_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 1.370e-8
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0 
Query:  123 DTSVLKKFEAANEERHQSCPICLEQLHEEPVSAGQCLHLMHNSCLVSWLNKDANSNCPVCR 183
            +T  L  F+ A     + C ICLE L +  VS+GQCLHL+H +CL +WL     + CPVCR
Sbjct:   73 ETLSLASFKVAERHASRECAICLEALADNVVSSGQCLHLLHQTCLNAWLASSPRALCPVCR 133
The following BLAST results are available for this feature:
BLAST of Gvermi12256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J060_9FLOR3.960e-7056.93RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J0E8_9FLOR3.670e-1155.36RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J043_9FLOR1.370e-845.90Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 141..182
e-value: 3.8E-6
score: 36.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 140..183
e-value: 3.1E-9
score: 37.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 141..183
score: 12.725326
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 126..229
e-value: 1.2E-14
score: 56.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..263
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 123..187
NoneNo IPR availablePANTHERPTHR15710:SF107RING/U-BOX SUPERFAMILY PROTEINcoord: 123..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..327
NoneNo IPR availableCDDcd16448RING-H2coord: 141..183
e-value: 2.66489E-11
score: 55.9211
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 133..189
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3988584..3989567 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12256.t1Gvermi12256.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3988584..3989567 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12256.t1 ID=Gvermi12256.t1|Name=Gvermi12256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MRVLPATQYAFRQATQELNTVAFPSAIRTLASVVASITMIVTIYLGYRKC
MRGRDDSFTAGRQQQQSLGIPLASYDAPGRTLSDEYLPVYVGNGRYIYVS
RNELPRDPPNVLRRDSNVPPRFDTSVLKKFEAANEERHQSCPICLEQLHE
EPVSAGQCLHLMHNSCLVSWLNKDANSNCPVCRVRIMESASFDGLGAKVT
ELVSVVQPVSETMERLNAESGPHREDDVRLLLADNSLGAQAETESASQRI
RNESIENDNENSAEHDYSQNANQRWEARNDEVTHQSRPHDSDAGVLSAQE
VMGSTIGGASGAVTRAGSDREVAVANN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD