Gvermi12238.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12238.t1
Unique Name	Gvermi12238.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	207

Homology

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BLAST of Gvermi12238.t1 vs. uniprot
Match: A0A2V3J039_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J039_9FLOR)

HSP 1 Score: 187 bits (475), Expect = 3.840e-55
Identity = 101/203 (49.75%), Postives = 138/203 (67.98%), Query Frame = 0

Query:    1 MILSTFSSLFYHLYPERSSSVISGQWLFLFIANTTVCMYQVFLSLSAGVDLVYWLLLNERQGVLTSRIFLHVVNFLLLFIDSLLSFRMMFHLTYVLVAVAIVAAWLIFAWIRYTITKQWIHQVLDFKIVGTSRAVKAHIAIVVTFLVVCIFFLLLNRLNRLNVISRRISAIIADELEVSKESITTDEENQMDSDLEDIIIESR 203
            M+L TFSSL YHLYPERS S   G   F  + +TTV +YQ+ LSL+ G+D++YW+LL +      SR  LH++NF+LLFIDS LS +++FHL YV +  AIV AWL+  W+RY  T+QW +QVL+F+ VG SRA+  H A+V+TFL      L +NR+NR+  I RRI +I ADE E+   SI  D EN  D +LE + +E++
Sbjct:  130 MLLVTFSSLLYHLYPERSRSGRFGS--FSLLVSTTVGLYQISLSLALGIDVLYWVLLKDEHDEPISRALLHIINFVLLFIDSFLSLKLVFHLMYVFLGAAIVVAWLVSTWVRYAFTRQWSYQVLNFQAVGASRAIAVHFAMVLTFLATATIILFINRINRVEFIRRRIDSIAADEFEMCVRSINIDPENPPDDELERVFVETQ 330

The following BLAST results are available for this feature:

BLAST of Gvermi12238.t1 vs. uniprot

BLAST of Gvermi12238.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J039_9FLOR	3.840e-55	49.75	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 26..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..25
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 156..206
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..155
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..67
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 114..133
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 87..91
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 92..113
None	No IPR available	TMHMM	TMhelix		coord: 92..114
None	No IPR available	TMHMM	TMhelix		coord: 63..85
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3949650..3950270 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12238.t1	Gvermi12238.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_3404 3949650..3950270 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12238.t1 ID=Gvermi12238.t1|Name=Gvermi12238.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MILSTFSSLFYHLYPERSSSVISGQWLFLFIANTTVCMYQVFLSLSAGVD
LVYWLLLNERQGVLTSRIFLHVVNFLLLFIDSLLSFRMMFHLTYVLVAVA
IVAAWLIFAWIRYTITKQWIHQVLDFKIVGTSRAVKAHIAIVVTFLVVCI
FFLLLNRLNRLNVISRRISAIIADELEVSKESITTDEENQMDSDLEDIII
ESRAKL*