Gvermi12237.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12237.t1
Unique NameGvermi12237.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Homology
BLAST of Gvermi12237.t1 vs. uniprot
Match: R7QCT6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCT6_CHOCR)

HSP 1 Score: 120 bits (302), Expect = 4.970e-26
Identity = 133/427 (31.15%), Postives = 200/427 (46.84%), Query Frame = 0
Query:   58 LVGHLVFFSLRADFRFTEYLTWNYAALTLALLLALTCSLLDLIHD-------HPDQQDNEPTLLTNLTEQNTPDDVERQSHAPAPFAPPKWLLLFTRFTVPVYQLAVSATVFGAVVFWAAIYFNASIPLTYALLTQAVAAPAIAVLDFLLSFRMNFRLIYIVPYLIYNAAYLAVAYTL--TERAYLFIFLRRDASRSAFAAKAAGLAAASVFTAVLLYVITALRYLRATRSLPEAISARSKSRRVLEDRAESASRSVA--------------SSHSHHSDLSHLGLRRVPSNSFYGTAEFVQVENEDQLDHS-ASLSGRDRASVPIN---LGGDASGRSSWFRSSSA-RLTASLSGGSAGDGRPGFARTSSLSSVWDD--MQQPPPQKEDEVFSMPACYNAAKQADMVKLPHVPRVDSGKQIPRIAS 454
            LV H+V+F+L + F    Y TW YA L LA + A+ CSL+ L+ +         D++D      T L ++     + R                  + TVP+YQ+ V+ +VFGAVVFWAAI    S  ++Y LL     APA+AVLD LLS  + FRL+Y++   ++NAAY    Y    T+  Y++ F+     + AF AK  GLA AS+   + +Y +TA   L   R      SA  K+++  +D + +  +SV+              S      +  ++      S+ F      V   +E    +S +S+  R+R SVP     L    S R  W+RSS+A RL   +S  S  +     A      SVW++  +      +E E F+MPA YN  +  ++VKL   P V +G Q  R  S
Sbjct:    2 LVSHMVYFTLTSAFSPRLYATWAYAGLALAFVGAVFCSLMQLLREDIVKEAMRVDEEDGGHAADTLLGQEPVDRGLAR---------------FVAQVTVPLYQVFVTVSVFGAVVFWAAILPVQSADISYPLLALNAIAPAVAVLDVLLSMSIEFRLVYVLLVALFNAAYAGTLYVFYKTDGIYVYNFINPSQEKGAFIAKTTGLAVASIVAGLFVYSVTAFSGLMFRRR-----SAEKKTKKGDKDDSTADVKSVSDKDVELESQVTLDSSQDVQSEEKRNISAPTEDSHEFDEDEVVVADMDEKSKGNSKSSMEKRNRHSVPTQSPELARSGSNRR-WYRSSTAGRLQGVISLSSLAE----EAVEDRPISVWEEKGVDSAHAPQESEYFTMPAAYNGGRN-EVVKL--TPVVHAGTQFARSGS 400          
The following BLAST results are available for this feature:
BLAST of Gvermi12237.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QCT6_CHOCR4.970e-2631.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..510
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 496..510
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..415
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 229..247
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 248..268
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..228
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..201
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 269..510
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..173
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 150..172
NoneNo IPR availableTMHMMTMhelixcoord: 206..228
NoneNo IPR availableTMHMMTMhelixcoord: 78..100
NoneNo IPR availableTMHMMTMhelixcoord: 179..201
NoneNo IPR availableTMHMMTMhelixcoord: 248..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3946629..3948161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12237.t1Gvermi12237.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3946629..3948161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12237.t1 ID=Gvermi12237.t1|Name=Gvermi12237.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MNAVSDSDSVHSAAPNKHLHLFRAPLLFQPHEFTEASRSACLPLPVLLLL
RLFSAAALVGHLVFFSLRADFRFTEYLTWNYAALTLALLLALTCSLLDLI
HDHPDQQDNEPTLLTNLTEQNTPDDVERQSHAPAPFAPPKWLLLFTRFTV
PVYQLAVSATVFGAVVFWAAIYFNASIPLTYALLTQAVAAPAIAVLDFLL
SFRMNFRLIYIVPYLIYNAAYLAVAYTLTERAYLFIFLRRDASRSAFAAK
AAGLAAASVFTAVLLYVITALRYLRATRSLPEAISARSKSRRVLEDRAES
ASRSVASSHSHHSDLSHLGLRRVPSNSFYGTAEFVQVENEDQLDHSASLS
GRDRASVPINLGGDASGRSSWFRSSSARLTASLSGGSAGDGRPGFARTSS
LSSVWDDMQQPPPQKEDEVFSMPACYNAAKQADMVKLPHVPRVDSGKQIP
RIASRQASGKFSRTSSSNSVRPGPAPHLPSSAFTASMLARNSSAHRADGK
RRRGGHVGPR*
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