Gvermi12231.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12231.t1
Unique NameGvermi12231.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length182
Homology
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A2V3J044_9FLOR (60S ribosomal protein L18a n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J044_9FLOR)

HSP 1 Score: 317 bits (813), Expect = 5.930e-109
Identity = 153/181 (84.53%), Postives = 166/181 (91.71%), Query Frame = 0
Query:    1 MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            MTWLHQYHVVGRMVPGKGGSKP + TAVYRMRIFAPN VVAKSRFWYFLRKLKRVK+ANGEILAVNE+ E+D S VKNIG+WLRYKSRSDTVNM+KE+RDVSLTGAVEQMYMEMSGRHRARWSSIQVL V+ I +EDVRRPNT QFLD  L+FPLPH RPRA+ K+KRATYLA+RPTTC S
Sbjct:    1 MTWLHQYHVVGRMVPGKGGSKPGEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIFEKDPSTVKNIGIWLRYKSRSDTVNMFKEFRDVSLTGAVEQMYMEMSGRHRARWSSIQVLRVRIISDEDVRRPNTMQFLDPDLKFPLPHVRPRASVKSKRATYLANRPTTCTS 181          
BLAST of Gvermi12231.t1 vs. uniprot
Match: R7QCS4_CHOCR (60S ribosomal protein L18a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCS4_CHOCR)

HSP 1 Score: 312 bits (800), Expect = 5.880e-107
Identity = 147/181 (81.22%), Postives = 167/181 (92.27%), Query Frame = 0
Query:    1 MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            MTWLHQYHVVGRMVPGKGGSKPD+ TAVYRMRIFAPN VVAKSRFWYFLRKLKRVK+ANGEIL+VNE+HE+++S VKNIGVWLRYKSRSDTVNMYKEYRDV++TGAVEQMYMEMSGRHRARWSSIQVL V+++ +EDVRRPNT QF++  L+FPLPH RPRA+TK+KR T++  RP T VS
Sbjct:    1 MTWLHQYHVVGRMVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILSVNEIHEKNISAVKNIGVWLRYKSRSDTVNMYKEYRDVTMTGAVEQMYMEMSGRHRARWSSIQVLKVQEVADEDVRRPNTLQFMETDLKFPLPHTRPRASTKSKRPTFMGSRPVTFVS 181          
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A7S1THG2_9RHOD (60S ribosomal protein L18a n=3 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THG2_9RHOD)

HSP 1 Score: 228 bits (582), Expect = 8.120e-74
Identity = 110/180 (61.11%), Postives = 139/180 (77.22%), Query Frame = 0
Query:    1 MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTTCV 180
            M WLHQY V+GR +P +   +P+    VYRM+IFAPN VVAKSRFW+F+ +LK VK+A+GE+++VNE+ E+    V+N G+WLRYKSRSD VNMYKEYRDV++TGAVEQMYMEMSGRHRARWSS+QVL V  +  +D RRP T QF + +LRFP+PH  PRA  K  R T+ A RP+T +
Sbjct:    1 MGWLHQYAVIGRKLPTEENPEPE----VYRMKIFAPNEVVAKSRFWFFVSQLKNVKKASGEVISVNELFEKRAGVVRNYGIWLRYKSRSDEVNMYKEYRDVTMTGAVEQMYMEMSGRHRARWSSVQVLKVVVVDAKDCRRPQTLQFHENKLRFPMPHKLPRANFKRHRTTFKASRPSTAI 176          
BLAST of Gvermi12231.t1 vs. uniprot
Match: UPI001E1DC756 (60S ribosomal protein L18a-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC756)

HSP 1 Score: 223 bits (569), Expect = 7.210e-72
Identity = 109/151 (72.19%), Postives = 126/151 (83.44%), Query Frame = 0
Query:   31 MRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            MRIFAPN VVAKSRFWYFLRKLKRVK+ANGEIL+VNE+HE D+S VKN GVWLRYKSRSDTVNMYKEYRD+++TGAVEQMYME+SGRHRARWSSIQVL V ++ +  VRR  T Q L   L+FPLPH RPR A  +++AT+ A  P T +S
Sbjct:   25 MRIFAPNEVVAKSRFWYFLRKLKRVKKANGEILSVNEIHESDISTVKNFGVWLRYKSRSDTVNMYKEYRDITMTGAVEQMYMELSGRHRARWSSIQVLKVAEVEDSAVRRDGTLQMLTKDLKFPLPHTRPRPAVPSQKATFRATAPVTFIS 175          
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A7S0T4C8_9RHOD (60S ribosomal protein L18a n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4C8_9RHOD)

HSP 1 Score: 217 bits (553), Expect = 2.720e-69
Identity = 108/180 (60.00%), Postives = 135/180 (75.00%), Query Frame = 0
Query:    3 WLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLD-AQLRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            WLHQY VVGR  P +   +P     V+RM+IFA N VVAKSRFW++LR+L++VK+ANGEILAV E+ E+D   +KN GVWLRYKSRSDTVNMYKE+RD  +T AVEQMY+EMSG HRARWSSIQVL V+++  ED RR  T Q LD + ++FPLPH   R+  K  R+T+ + RP T +S
Sbjct:   10 WLHQYVVVGRKQPSEAEPEPQ----VFRMKIFAQNTVVAKSRFWFYLRQLRKVKKANGEILAVEEVFEKDPGTIKNFGVWLRYKSRSDTVNMYKEFRDTHMTRAVEQMYLEMSGNHRARWSSIQVLKVQEVANEDCRRERTLQMLDESNIKFPLPHRVQRSYFKKHRSTFKSRRPVTVIS 185          
BLAST of Gvermi12231.t1 vs. uniprot
Match: M2WQY2_GALSU (60S ribosomal protein L18a n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WQY2_GALSU)

HSP 1 Score: 217 bits (552), Expect = 2.960e-69
Identity = 104/179 (58.10%), Postives = 133/179 (74.30%), Query Frame = 0
Query:    2 TWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTTCV 180
             WLHQY VVGR +P +   +P     +YR++IFAPN V AKSRFWYFLRKLKRVK+++GEIL ++E+ E+  ++VKN G+W+RYKSRSDT+NMY+EYRDV++ GAVEQMY +MSGRHRARWSSI VL    +  +D RR    QF D++++F LPH RPRA  K     + A RPTT V
Sbjct:    3 AWLHQYSVVGRKIPTQEEPEPP----IYRLKIFAPNVVNAKSRFWYFLRKLKRVKKSSGEILNISEIFEKKSTQVKNYGIWIRYKSRSDTINMYREYRDVTVNGAVEQMYKDMSGRHRARWSSIWVLKAMPVAAKDCRRSKVTQFHDSKIKFALPHMRPRAPLKKYNTPFKAKRPTTIV 177          
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A7S0ZI05_9RHOD (60S ribosomal protein L18a n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI05_9RHOD)

HSP 1 Score: 214 bits (545), Expect = 4.470e-68
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 0
Query:    3 WLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQ-LRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            WLHQY V GR +P +   +P     VYRM+IFAPN VVAKSRFW++L +L++VK+A+GEILAV E+ E +   +KN GVW+RYKSRSDTVNMY+EYRD  +TGAVEQMYMEMSG HRARWS+IQVL V ++ +ED RRP T Q  D + ++FPLPH   R   K  R+++ + RP T +S
Sbjct:   10 WLHQYVVAGRKLPTESDPEP----VVYRMKIFAPNQVVAKSRFWFYLGQLRKVKKASGEILAVAEIFEENPGSIKNFGVWIRYKSRSDTVNMYREYRDTHMTGAVEQMYMEMSGNHRARWSAIQVLKVLEVADEDCRRPRTMQMHDEENIKFPLPHTVQRPYFKKHRSSFKSRRPVTMIS 185          
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A5J4YWN7_PORPP (60S ribosomal protein L18a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWN7_PORPP)

HSP 1 Score: 208 bits (530), Expect = 8.230e-66
Identity = 104/180 (57.78%), Postives = 132/180 (73.33%), Query Frame = 0
Query:    3 WLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQ-LRFPLPHARPRAATKAKRATYLAHRPTTCVS 181
            WLH+Y VVGR  P    ++ +    VYRM+IFAPN VVAKSR+WY+LR+LK++K+A+GE+L V E+ E+D   +KN GVW+RYKSRSDTVNMY+EYRD  ++ AVEQMYMEMSG HRARWSSIQVL  +++ +ED RR +  Q  DA  +RFPLPH   RA  K  R  + A RP T +S
Sbjct:    9 WLHEYVVVGRKKP----TETEPEQPVYRMKIFAPNQVVAKSRYWYYLRQLKKMKKASGEVLGVYEIFEKDPLTIKNYGVWIRYKSRSDTVNMYREYRDTKISRAVEQMYMEMSGNHRARWSSIQVLKAEEVKDEDCRREHITQMHDADSIRFPLPHRVKRAYLKKHRGVFKAKRPMTMIS 184          
BLAST of Gvermi12231.t1 vs. uniprot
Match: T0R8B2_SAPDV (60S ribosomal protein L18a n=7 Tax=Saprolegniaceae TaxID=4764 RepID=T0R8B2_SAPDV)

HSP 1 Score: 194 bits (494), Expect = 1.870e-60
Identity = 94/178 (52.81%), Postives = 127/178 (71.35%), Query Frame = 0
Query:    1 MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTT 178
            M  +HQY VVGR  P    ++ D +   +RM++FAPN V+AKSRFWYFL ++K++K+  GEIL +NE+ E++   VKN GVW+RY SRS T NMYKEYRDV+L GAVEQMY E++GRHRAR  SIQ++    +  +D ++PNT Q+ D+ ++FPL H  PR A K +R  + A RPTT
Sbjct:    1 MPAIHQYQVVGRKAP----TESDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILCLNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSAIKFPLSHRVPRPANKNQRTVFKASRPTT 174          
BLAST of Gvermi12231.t1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.650e-60
Identity = 93/178 (52.25%), Postives = 127/178 (71.35%), Query Frame = 0
Query:    1 MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLRKLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQLRFPLPHARPRAATKAKRATYLAHRPTT 178
            M  +HQY VVGR  P    ++ D +   +RM++FAPN V+AKSRFWYFL ++K++K+  GEIL +NE+ E++   VKN G+W+RY SRS T NMYKEYR V+L GAVEQMY E++GRHRAR  SIQ++    +  +D ++PNT Q+ D+ ++FPL H  PR ATK +R  + A RPTT
Sbjct:    1 MPAIHQYQVVGRKAP----TETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTT 174          
The following BLAST results are available for this feature:
BLAST of Gvermi12231.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J044_9FLOR5.930e-10984.5360S ribosomal protein L18a n=1 Tax=Gracilariopsis ... [more]
R7QCS4_CHOCR5.880e-10781.2260S ribosomal protein L18a n=1 Tax=Chondrus crispu... [more]
A0A7S1THG2_9RHOD8.120e-7461.1160S ribosomal protein L18a n=3 Tax=Compsopogon cae... [more]
UPI001E1DC7567.210e-7272.1960S ribosomal protein L18a-like n=1 Tax=Mercenaria... [more]
A0A7S0T4C8_9RHOD2.720e-6960.0060S ribosomal protein L18a n=2 Tax=Erythrolobus ma... [more]
M2WQY2_GALSU2.960e-6958.1060S ribosomal protein L18a n=1 Tax=Galdieria sulph... [more]
A0A7S0ZI05_9RHOD4.470e-6858.3360S ribosomal protein L18a n=1 Tax=Timspurckia oli... [more]
A0A5J4YWN7_PORPP8.230e-6657.7860S ribosomal protein L18a n=1 Tax=Porphyridium pu... [more]
T0R8B2_SAPDV1.870e-6052.8160S ribosomal protein L18a n=7 Tax=Saprolegniaceae... [more]
A0A1V9Z1Q2_9STRA2.650e-6052.2560S ribosomal protein L18a n=1 Tax=Achlya hypogyna... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.10coord: 1..72
e-value: 6.2E-30
score: 104.8
NoneNo IPR availableGENE3D3.10.20.10coord: 74..148
e-value: 8.5E-34
score: 117.7
NoneNo IPR availablePANTHERPTHR10052:SF160S RIBOSOMAL PROTEIN L18Acoord: 3..179
NoneNo IPR availableSUPERFAMILY160374RplX-likecoord: 73..148
IPR02113860S ribosomal protein L18a/ L20, eukaryotesPIRSFPIRSF002190Ribosomal_L18acoord: 1..180
e-value: 1.5E-67
score: 224.4
IPR023573Ribosomal protein 50S-L18Ae/60S-L20/60S-L18APFAMPF01775Ribosomal_L18Acoord: 4..131
e-value: 2.0E-47
score: 160.2
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aPANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 3..179
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aHAMAPMF_00273Ribosomal_L18Aecoord: 4..71
score: 18.942299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3928028..3928573 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12231.t1Gvermi12231.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3928028..3928573 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12231.t1 ID=Gvermi12231.t1|Name=Gvermi12231.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=182bp
MTWLHQYHVVGRMVPGKGGSKPDDHTAVYRMRIFAPNAVVAKSRFWYFLR
KLKRVKRANGEILAVNEMHERDMSRVKNIGVWLRYKSRSDTVNMYKEYRD
VSLTGAVEQMYMEMSGRHRARWSSIQVLNVKQIGEEDVRRPNTQQFLDAQ
LRFPLPHARPRAATKAKRATYLAHRPTTCVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021138Ribosomal_L18a/L20_eukaryotes
IPR023573Ribosomal_L18a//L18Ae/LX
IPR02887750S_L18Ae/Ribosomal_L18a/L20