Gvermi12224.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12224.t1
Unique NameGvermi12224.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length400
Homology
BLAST of Gvermi12224.t1 vs. uniprot
Match: A0A2V3J1B9_9FLOR (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1B9_9FLOR)

HSP 1 Score: 358 bits (920), Expect = 3.990e-116
Identity = 191/372 (51.34%), Postives = 257/372 (69.09%), Query Frame = 0
Query:   36 AKAEPQAHSPSKTSARNAPHPPRNSTPCINDLSPEPPKSHTRRCREKVTRQFENLLQVLPPPPRGVEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKALALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLRSCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLSDLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSAHAVDQVFQYASILAESFVQHSRGAPSMQQP-----------TVAITCGGQLVLNPGVSMDAESGLQAFANAEADICTPHGWP-SAALMIPQATQGSPKSFLEESQLV 395
            +K  PQ  S S+ S+     P    TP       EPPKSHTRRCREKVTRQFE+LL+VLPPP RGVEVRHKAQILDYTI+VF+ LLARRT L THIALASN ++R WANST+ +A A +KS+  +  PSI+SL  PFMRFYCVKNSW+YAETWI + ++ HA+L SCFVN+  S++S  L+AFA++SKARY +   +V+G++SR RQT+RPEWL D+  DQ VFDRA +A + +V +ALA+PV+A N CLAV++FA  T + +SA  VDQ+F +A IL + FVQ+SRG    +Q             + ++  G+  +NPGVS+DA S +  F      +   H W   A +++PQ ++ S +S  E+++L+
Sbjct:  195 SKKPPQQASTSQNSSSIHVAPNSPGTPA------EPPKSHTRRCREKVTRQFEHLLEVLPPPSRGVEVRHKAQILDYTINVFRSLLARRTFLHTHIALASNHTLRQWANSTLLRASAAVKSDSFAQSPSIASLLHPFMRFYCVKNSWSYAETWILTPDTKHAALHSCFVNSDDSNVSKNLDAFATASKARYGAASEIVSGVVSRARQTKRPEWLVDIADDQCVFDRAALAAQHDVQIALAVPVVAENMCLAVIVFAHTTPRTFSAAEVDQLFGFAFILGQRFVQYSRGCVLQRQXXXXXXXXXXXXAIPVSPDGRTAINPGVSVDATSAVGVFDTPPPPMPASHTWTIPAPILLPQLSETSSRSLFEDTKLL 560          
BLAST of Gvermi12224.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 127 bits (320), Expect = 9.170e-29
Identity = 88/281 (31.32%), Postives = 136/281 (48.40%), Query Frame = 0
Query:   73 KSHTRRCREKVTRQFENLLQVLPPPPRGVEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKALALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHAS--------------LRSCFVNAQHSHLS------NTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLSDLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSAHAVDQVFQYASILAESFVQHSRGAPSMQQPTVA 333
            KSHTRRCREKV  +F+ L+  LPPPP G E++HKAQILDY+I V + L +R+ +L++ +AL++ +++  W +  +         N A D P      +PF++  C K +W  AE W+   E    S              LR+ F    H +L       + ++ F   S+    +P     G   RV  T RPEWL DL SD+ VF RA +A K+ +   L+IP +   +   V+   D   +      +D  F  A ++  +F      A +  +  V+
Sbjct:  268 KSHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVV---------NDAEDFPDA---INPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASF----HENLEQDPPRHHRIHEFIDESRRFKFTP---TCGSPGRVYSTMRPEWLHDL-SDEQVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAFGARGNRAVAASKDNVS 528          
BLAST of Gvermi12224.t1 vs. uniprot
Match: A0A2V3ILC3_9FLOR (BHLH domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC3_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 6.630e-23
Identity = 78/298 (26.17%), Postives = 128/298 (42.95%), Query Frame = 0
Query:   76 TRRCREKVTRQFENLLQVLPPPPRGVEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKALALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLRSCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQ--------------------------------------------TRRPEWLSDLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSAHAVDQVFQYASILAESFVQHSRGAPSMQQ 329
            TR+CR KV  +F+ LL +LP PP    ++HKAQIL+YTI V++ + AR+T L+  +AL+S   +  W             SN  S   S+     P++   C K +W Y+E W+   E               S+ +N     A + ++R+ +P +++ G  +R+R                                             T RPEWL  L  D   F RA +AR +++ V   +P+   +   AV +F D   + Y A  +D   + A +L  ++     GA +M++
Sbjct:  175 TRKCRAKVNSKFKELLGILPAPPANTGIKHKAQILEYTIRVYRDIHARKTLLEAELALSSPSQLNAWI------------SNIVSRSRSLQDALAPYLSLICTKGAWKYSEAWVPLQEPE-------------SNTTNDSQLRAITGESRFLTPANMLLGPNARLRLGLAVIPSLGNTDDPDLQPKLERFRDRSRPYTCKPRVDLPGRIMCTMRPEWLPSL-EDHEAFQRAKLARDASLVVCFGVPIFIGDHVAAVAVFYDTDQRTYDAKCLDLAVRVARMLGSAY-----GASAMKR 441          
BLAST of Gvermi12224.t1 vs. uniprot
Match: A0A1X6PIG4_PORUM (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 95.5 bits (236), Expect = 1.400e-17
Identity = 84/319 (26.33%), Postives = 128/319 (40.13%), Query Frame = 0
Query:   74 SHTRRCREKVTRQFENLLQVLPPPPRGVEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKALALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWI---TSYESTHASLRSCFVNA----------------------------QHSHLS--------------------------------------------NTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLSDLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSAHAVDQVFQYASILAESF 317
            SHTR+CR KV  +F+ LL +LPP P   +V+HKAQILDYTI +++R+ AR+  L+  +AL++  ++  W ++ +A +  L        P ++     P++    V+  + YAE W+   T  E   A+ +    NA                            Q   LS                                            NT  A  +   A          G+  RV  + RPEWL  L SD   F RA  A  S +++ LA+PV+   +  AV  F D   +PY A  V      A+++  +F
Sbjct:  345 SHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTL--------PEALR----PYLHLIAVQKRFRYAELWLPQPTKAEGM-AAAKKAGANASLSLPSGDSIVLTRSMALVLPAPVPTAGQTDELSVGLGAPTGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENTTRAIEAFRDATASCVVPPRVGMPGRVYCSMRPEWLPML-SDPHAFIRAEYAANSKLSMCLAVPVLLCGRVAAVAAFFDTGKRPYDASVVGLAHDVANLVGNAF 649          
BLAST of Gvermi12224.t1 vs. uniprot
Match: UPI001E0CA7A5 (ATP-binding protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001E0CA7A5)

HSP 1 Score: 59.7 bits (143), Expect = 6.240e-6
Identity = 43/155 (27.74%), Postives = 75/155 (48.39%), Query Frame = 0
Query:  160 SDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLRSCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLSDLP-SDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSAHAVDQVFQYASIL 313
            S+ PS        +R  C   +W++ E WI  ++++   L   +      H +  L  F   S+     P +V  G   RV  T++PEW+ ++   +Q VF R  +A+ + +  ALA+P+IA  K +A+++F D    P +   +D V   A+ L
Sbjct:  322 SEAPSFDDAVTIILRKVCETVNWSFGEAWIPDFQNSVLQLSPAWF-----HSTEKLEYFREVSQT-LAFPLNV--GQPGRVWATKKPEWVENISIQNQEVFSRYKIAKATGLKTALAVPMIANEKIIAILVFYDFLVHPRNEQMLDLVKSVATQL 468          
The following BLAST results are available for this feature:
BLAST of Gvermi12224.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J1B9_9FLOR3.990e-11651.34GAF domain-containing protein n=1 Tax=Gracilariops... [more]
A0A7S1TET1_9RHOD9.170e-2931.32Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A2V3ILC3_9FLOR6.630e-2326.17BHLH domain-containing protein n=2 Tax=Gracilariop... [more]
A0A1X6PIG4_PORUM1.400e-1726.33BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
UPI001E0CA7A56.240e-627.74ATP-binding protein n=1 Tax=Waterburya agarophyton... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 204..316
e-value: 2.2E-8
score: 35.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 233..316

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3903534..3904733 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12224.t1Gvermi12224.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3903534..3904733 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12224.t1 ID=Gvermi12224.t1|Name=Gvermi12224.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=400bp
LSNQNLSVASDVSSNPLSVSSPDSNSASTDLDWSTAKAEPQAHSPSKTSA
RNAPHPPRNSTPCINDLSPEPPKSHTRRCREKVTRQFENLLQVLPPPPRG
VEVRHKAQILDYTISVFQRLLARRTSLQTHIALASNQSVRDWANSTMAKA
LALLKSNPASDPPSISSLADPFMRFYCVKNSWAYAETWITSYESTHASLR
SCFVNAQHSHLSNTLNAFASSSKARYQSPCSVVTGIISRVRQTRRPEWLS
DLPSDQSVFDRAGVARKSNVNVALAIPVIAANKCLAVMLFADVTSKPYSA
HAVDQVFQYASILAESFVQHSRGAPSMQQPTVAITCGGQLVLNPGVSMDA
ESGLQAFANAEADICTPHGWPSAALMIPQATQGSPKSFLEESQLVRMKY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029016GAF-like_dom_sf