Gvermi12145.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12145.t1
Unique NameGvermi12145.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Homology
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A2V3IMT3_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMT3_9FLOR)

HSP 1 Score: 267 bits (682), Expect = 3.110e-90
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0
Query:    1 MSDGEVAVEAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKDGADQ 143
            MSD EV V+AVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEV KALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK+  D+
Sbjct:    1 MSD-EVPVDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVVKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKEDGDE 142          
BLAST of Gvermi12145.t1 vs. uniprot
Match: R7QB31_CHOCR (40S ribosomal protein S12 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB31_CHOCR)

HSP 1 Score: 229 bits (585), Expect = 2.850e-75
Identity = 110/126 (87.30%), Postives = 120/126 (95.24%), Query Frame = 0
Query:   13 EDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            EDVGEMD++KALQEV+KK++VHDGLVRGLNE AKALDRG AQLC+LASDCDEP YTRLIEALC+AH VALVRVPDKKQLGEWAGLCKIDEEGNATKVVG+T  VIKEFGESSPGYEFLLEY+KE+K
Sbjct:   26 EDVGEMDLMKALQEVMKKAIVHDGLVRGLNECAKALDRGLAQLCVLASDCDEPAYTRLIEALCSAHSVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGSTCVVIKEFGESSPGYEFLLEYIKEDK 151          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A2V3INP5_9FLOR (40S ribosomal protein S12 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INP5_9FLOR)

HSP 1 Score: 227 bits (579), Expect = 2.670e-74
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VHDGL RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+EGNA KVVGATSCVIKEFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHDGLFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKEGNAAKVVGATSCVIKEFGESSPGYELLLEYLKESK 121          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A1X6P156_PORUM (40S ribosomal protein S12 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P156_PORUM)

HSP 1 Score: 194 bits (493), Expect = 2.490e-61
Identity = 92/124 (74.19%), Postives = 105/124 (84.68%), Query Frame = 0
Query:   16 GEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKD 139
            G MD++KALQE+LKK++VHDGLVRGL E AKALDR +AQLCILA DCDEP YTRLIEALCA H +  VRVP+KKQLGEWAGLCKID EG ATKVVG T  V+K+FGE S G+EFLL+YL  NK+
Sbjct:   25 GAMDLMKALQEILKKAIVHDGLVRGLRECAKALDRREAQLCILAQDCDEPAYTRLIEALCAEHSINFVRVPEKKQLGEWAGLCKIDAEGVATKVVGCTCAVVKQFGERSAGFEFLLDYLNANKE 148          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A2V3IBS1_9FLOR (40S ribosomal protein S12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBS1_9FLOR)

HSP 1 Score: 182 bits (463), Expect = 3.500e-57
Identity = 94/121 (77.69%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   18 MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            MDILKALQEVLKKS+VH    RGLNEV KALDRGQ QLCILASDCDEPRYTRLI+ALCA HEVALVRVPDKKQLGEWAGLCKID+E               EFGESSPGYE LLEYLKE+K
Sbjct:    1 MDILKALQEVLKKSVVHTDWFRGLNEVVKALDRGQVQLCILASDCDEPRYTRLIDALCAVHEVALVRVPDKKQLGEWAGLCKIDKE---------------EFGESSPGYELLLEYLKESK 106          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A5J4Z5L5_PORPP (40S ribosomal protein S12 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L5_PORPP)

HSP 1 Score: 181 bits (458), Expect = 4.350e-56
Identity = 92/135 (68.15%), Postives = 108/135 (80.00%), Query Frame = 0
Query:    5 EVAVEA-VPE--DVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKE 136
            EVA  A  PE  D GEMDI KALQEVLKK+L+HDGL+RGL E AKALDRG+AQLC+LASDCDEP YTRL+EALCA   + LV+VP+K QLGEWAGL K+DE+G  TK V A+  V+K+FGE S G +FL EYL+E
Sbjct:    6 EVAAPAPAPEVVDEGEMDITKALQEVLKKALIHDGLLRGLRECAKALDRGEAQLCVLASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGEWAGLAKVDEQGIVTKSVKASCVVVKDFGEQSKGLDFLKEYLRE 140          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A7S0ZM77_9RHOD (40S ribosomal protein S12 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZM77_9RHOD)

HSP 1 Score: 176 bits (446), Expect = 2.820e-54
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 0
Query:    5 EVAVE-AVPEDVGE--MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLK 135
            EV VE +VPE + E  MDI  ALQEVLK +L+HDGLVRGL E AKALDR QAQLCILASDCDEP YTRL+EALCA   + LV+VP+K QLG+WAGL KIDE G ATKVV A+  V+K+FG++S G EFLL YLK
Sbjct:    7 EVEVETSVPEVLDESVMDITMALQEVLKVALIHDGLVRGLRECAKALDRRQAQLCILASDCDEPAYTRLVEALCAERGINLVKVPEKMQLGQWAGLAKIDETGTATKVVKASCVVVKDFGDTSKGLEFLLNYLK 140          
BLAST of Gvermi12145.t1 vs. uniprot
Match: U4TUS6_DENPD (40S ribosomal protein S12 n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TUS6_DENPD)

HSP 1 Score: 166 bits (421), Expect = 1.910e-50
Identity = 76/123 (61.79%), Postives = 99/123 (80.49%), Query Frame = 0
Query:   16 GEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENK 138
            G MD+ +ALQEVLKK+L+HDG+V GL+E AKALD+ QA LC+LA +CDEPRY +L++ALCA H++ L++V + K+LGEW+GLCKID  G A KVVG++  VIK+FGE SP  + L EYLK NK
Sbjct:   22 GPMDVNQALQEVLKKALIHDGVVHGLHEAAKALDKRQAVLCVLAENCDEPRYKQLVQALCAEHQIDLIKVDNNKKLGEWSGLCKIDSTGKARKVVGSSCVVIKDFGEESPALDVLKEYLKNNK 144          
BLAST of Gvermi12145.t1 vs. uniprot
Match: UPI000A2A7286 (40S ribosomal protein S12 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7286)

HSP 1 Score: 163 bits (412), Expect = 3.940e-49
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 0
Query:    1 MSDGEVAVEAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLK 135
            MSD E      P   G MDI  ALQEVLK +L+H+GLVRGL+E AKALDR QA LCILA++CDEP Y +L+EALCA H + L+RV D K+LGEW+GLCKID+EG A KVVG +  VI ++G+ SP ++ +++Y K
Sbjct:    1 MSDTEGGDVPSPAPGGPMDINTALQEVLKTALIHNGLVRGLHEAAKALDRRQAHLCILANNCDEPMYVKLVEALCAEHTIKLLRVDDSKKLGEWSGLCKIDKEGKARKVVGCSCVVITDYGKESPAHDVVMQYSK 135          
BLAST of Gvermi12145.t1 vs. uniprot
Match: A0A6I9RQY8_ELAGV (40S ribosomal protein S12 n=6 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RQY8_ELAGV)

HSP 1 Score: 162 bits (410), Expect = 7.930e-49
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 0
Query:    3 DGEVAVEAVPEDVGE-MDILKALQEVLKKSLVHDGLVRGLNEVAKALDRGQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKIDEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLK 135
            DG +AVE     +GE MD++ ALQ V+KKSL HDGLVRGL+E AK +++  AQLCILA DC++P YT+L++ALCA H V LV VP  K LGEWAGLCKID EG A KVVG +  VIK++GE S G   + EY+K
Sbjct:    5 DGGIAVETTAPALGEPMDLMTALQLVMKKSLAHDGLVRGLHEAAKVIEKHAAQLCILAEDCNQPDYTKLVKALCADHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVIKDYGEESEGLHIVQEYVK 138          
The following BLAST results are available for this feature:
BLAST of Gvermi12145.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMT3_9FLOR3.110e-9094.4140S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
R7QB31_CHOCR2.850e-7587.3040S ribosomal protein S12 n=1 Tax=Chondrus crispus... [more]
A0A2V3INP5_9FLOR2.670e-7491.7440S ribosomal protein S12 n=2 Tax=Gracilariopsis c... [more]
A0A1X6P156_PORUM2.490e-6174.1940S ribosomal protein S12 n=1 Tax=Porphyra umbilic... [more]
A0A2V3IBS1_9FLOR3.500e-5777.6940S ribosomal protein S12 n=1 Tax=Gracilariopsis c... [more]
A0A5J4Z5L5_PORPP4.350e-5668.1540S ribosomal protein S12 n=1 Tax=Porphyridium pur... [more]
A0A7S0ZM77_9RHOD2.820e-5469.4040S ribosomal protein S12 n=1 Tax=Timspurckia olig... [more]
U4TUS6_DENPD1.910e-5061.7940S ribosomal protein S12 n=2 Tax=Dendroctonus pon... [more]
UPI000A2A72863.940e-4958.5240S ribosomal protein S12 n=1 Tax=Exaiptasia diaph... [more]
A0A6I9RQY8_ELAGV7.930e-4959.7040S ribosomal protein S12 n=6 Tax=Arecaceae TaxID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 41..57
score: 56.68
coord: 27..40
score: 65.58
coord: 82..103
score: 63.64
coord: 107..120
score: 37.66
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 12..137
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 23..41
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 1..137
e-value: 1.3E-51
score: 175.4
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 17..136
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 23..115
e-value: 7.4E-30
score: 102.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3560602..3561033 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12145.t1Gvermi12145.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3560602..3561033 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12145.t1 ID=Gvermi12145.t1|Name=Gvermi12145.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MSDGEVAVEAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDR
GQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKI
DEEGNATKVVGATSCVIKEFGESSPGYEFLLEYLKENKDGADQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45