Gvermi12106.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12106.t1
Unique NameGvermi12106.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Homology
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A2V3JA98_9FLOR (DNA replication complex GINS protein PSF3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JA98_9FLOR)

HSP 1 Score: 271 bits (693), Expect = 1.950e-89
Identity = 133/221 (60.18%), Postives = 166/221 (75.11%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKLLV--DVALPGALSRAFAARCWGITDSAAFSGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGKRSREELGSPVTPSTRPRTS 219
            MEDYFSIDDILAG++ + +TF + G+ + +LD   V +WNA++   ++ DN+P++D+ MPK + VALP+WLAE+LAAR F  + LPRC+ K   Q LR D R+V+L S C +Y+ LGVRLA+LLV  DV  PG L RAFAARCW I D A FSGD+GA AM+GFD LEC+LF + H +AVATRRWKERRGDRIS       KR REE+GSPVTPSTRPRTS
Sbjct:    1 MEDYFSIDDILAGNHCISTTFEEQGFLLGHLDPENVMDWNANNCNPDDYDNDPDLDRHMPKGMTVALPYWLAEALAARNFAKVQLPRCYGKSTRQALRADARSVDLRSKCDNYYALGVRLARLLVGDDVTFPGVLLRAFAARCWSIADMAVFSGDRGAHAMKGFDLLECDLFCDIHGIAVATRRWKERRGDRISGSGAHFRKRPREEIGSPVTPSTRPRTS 221          
BLAST of Gvermi12106.t1 vs. uniprot
Match: R7Q771_CHOCR (DNA replication complex GINS protein psf3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q771_CHOCR)

HSP 1 Score: 189 bits (481), Expect = 2.410e-57
Identity = 105/217 (48.39%), Postives = 141/217 (64.98%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAE-WNASHRTAEELDNNPNIDK-DMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAFSGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGKRSREE-LGSPVTPST 214
            MEDYFSIDDIL+ + R+++TF    + +A+LD    A  W+++ +++ E       D+ D+P   ++ALPFWLA+SLA R   ++ LPRCF   A   LR D R V L + C +++ LG+R+AKL+ D  L  AL RAFA RCWGI DSA F+G +G  A+ G +  E +LF  AH + +A RRWKERR DRI     +LGKR REE  GSPVTPST
Sbjct:    1 MEDYFSIDDILSSEPRIYATFHVQAHQLAHLDPAGAAAVWSSNKQSSAE-------DRLDLPSGHRLALPFWLADSLAQRGVAALELPRCFATGARHALRADARAVRLQTRCPAFYALGLRIAKLVRDSRLSEALVRAFADRCWGIVDSAVFAGARGVAALEGLEEKERKLFFAAHGLDIALRRWKERRIDRIGMAHGVLGKRCREEGPGSPVTPST 210          
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A0L0DJQ1_THETB (DNA replication complex GINS protein PSF3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJQ1_THETB)

HSP 1 Score: 80.1 bits (196), Expect = 4.560e-15
Identity = 63/205 (30.73%), Postives = 92/205 (44.88%), Query Frame = 0
Query:    4 YFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAFSGDKG-AQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGKRSREELG 207
            Y+ ID IL  D  V + F     ++  LD    +               P+ID+      +  +P WLA SLA R  V++  P  F +     L  D + +N+   C  ++ LGV+LAKL  + ALP  L +AF  R   I D++   G    ++ +R     E  LF   HA A    R+K R  DR++A   +  KR R  LG
Sbjct:    3 YYDIDAILLDDQIVPAHFNTAAMDLGVLDPSTPS---------------PHIDQGT----ETDIPLWLALSLAKRSIVTLRSPSFFGESFQAHLLADAQVLNIHDKCPFFYELGVKLAKLTGNWALPAVLKKAFHTRYLRIVDTSINLGAADYSEHIRKLTTAERNLFHLGHAAAAEVLRYKTRDTDRLAASAVVTRKRRRAALG 188          
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A507CUX0_9FUNG (DNA replication complex GINS protein PSF3 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CUX0_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.810e-12
Identity = 47/140 (33.57%), Postives = 67/140 (47.86%), Query Frame = 0
Query:    3 DYFSIDDILAGDNRV--FSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAAR 140
            DY+ I+ ILA   RV  F ++   GY                      LD N   D D+P   +V LP+W+AE+LA RE+V I LP+ ++ K    L+     VNL  +C  ++  G+R+  L+VD  L   LS  F  R
Sbjct:    6 DYYDIEAILADQQRVPCFFSYPVPGYGF--------------------LDGNN--DADLPPNTRVELPYWMAETLAIREWVEIDLPKYYQVKVRNDLKASPTVVNLYQLCPYFYEFGIRIVNLIVDDVLCKVLSETFTHR 123          
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A2T9YWG2_9FUNG (DNA replication complex GINS protein PSF3 n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9YWG2_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 2.290e-12
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 0
Query:    3 DYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAFSGD-KGAQAMRGFDWLECELFQEAHAMAVATRRWK 184
            DYF IDDILA   RV    ++D   + Y                   D  P+I+K   K  +++LPFW+A++L A EFV + +P  F KK  + L   +  VNLA++C  Y+ LG RL++L     L   LS  +  R   I++ + +      A+ +   +  E  LF +         RW+
Sbjct:    5 DYFDIDDILAVHQRVPCYLKNDVVGLTY-----------------NYDLIPSINK---KGSKLSLPFWIADTLDAEEFVDLDVPPAFSKKVQRRLLASSTNVNLAAICPYYYKLGQRLSEL--SPGLVDFLSHVYLQRLVLISEQSQYENSTSSAEFLTQLESHEKSLFLDCLKSRKDYNRWQ 165          
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A060SPE9_PYCCI (DNA replication complex GINS protein PSF3 n=2 Tax=Trametes TaxID=5324 RepID=A0A060SPE9_PYCCI)

HSP 1 Score: 67.8 bits (164), Expect = 1.850e-10
Identity = 56/202 (27.72%), Postives = 89/202 (44.06%), Query Frame = 0
Query:    2 EDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKS---YFTLGVRLAKLLVDVA---LPGALSRAFAARCWGITDSAAF-----------SGDKGAQAMR-GFDWLECELFQEAHAMAVATRRWKE 185
            +DYFSI+ ILA + ++  TF+ D  ++ +LD  +                      D+    +V +P W+A  L   ++   ++P  F  +    L  + R+V L+++      ++  G  + +LL DV    L G L++ F AR   + D A             +GD GA A R G D  E ELFQ A   A  T+ W E
Sbjct:    3 DDYFSIESILAENQKIQCTFKIDVPDMGHLDGGKAG--------------------DIKALSKVQIPLWMAYILIFSDYADFTIPPPFSARVRNALNAEPRSVRLSALVGQGGLWYGFGRMIMRLLNDVPAEELSGVLTKTFRARLPDVIDQAQHFASLHATSGPSAGDAGAAAFREGMDGTERELFQLAQDSARRTKAWYE 184          
BLAST of Gvermi12106.t1 vs. uniprot
Match: UPI000C6D2E90 (DNA replication complex GINS protein PSF3-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D2E90)

HSP 1 Score: 66.6 bits (161), Expect = 5.910e-10
Identity = 63/212 (29.72%), Postives = 91/212 (42.92%), Query Frame = 0
Query:    2 EDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKL--LVDVALPGALSRAFAARCWGITDSAAFSGDKGAQAMRG-FDWLECELFQEAHAMAVATRRWKERRGDRISALEPML--GKRSREELGS 208
            E+YFSIDDILA + R+        Y + +LD         S   +  L     ID          LPFWLAESL  R  +SI LP+ + +   + L  D   V+L  M   ++  G  L        V +   LS+ F  R   I DS+  S +  +  ++   D  E ELF       +    W+ R+ +RIS  + ++   KR R  L S
Sbjct:    9 ENYFSIDDILATNERIPCRLELPLYKLGFLD---------SSSESNHLLAGHKID----------LPFWLAESLHNRHIISIDLPKVYREAYREILLADANAVDLHKMGPYFYLFGQHLMSFPHRDKVEISKILSKTFRTRFRRIMDSSQNSLNDNSSCLKSNLDRTEEELFNVGKKAMMEFNGWQTRQTERISTSDLVVIHKKRKRTNLES 201          
BLAST of Gvermi12106.t1 vs. uniprot
Match: UPI0004407F87 (GINS complex, Psf3 component n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004407F87)

HSP 1 Score: 64.7 bits (156), Expect = 2.560e-9
Identity = 56/202 (27.72%), Postives = 81/202 (40.10%), Query Frame = 0
Query:    3 DYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKS---YFTLGVRLAKLLVDVA---LPGALSRAFAARCWGITDSA-------------AFSGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKE 185
            DY+SID ILA + +V  TF+ D  ++ YLD                       D+D+    ++ LPFWL   L   +F   ++P  F ++    L  D  +V L+ +  S   ++  G  +A L+ D     +   LS  F  R   I D A             A  G  G     G D  E ELF  A   A  T++W E
Sbjct:    4 DYYSIDAILAENQKVQCTFKVDVPDLGYLDG--------------------GSDRDIKALSKLQLPFWLTPMLLYSDFADCTVPHAFNQRVRNALNADATSVKLSGLVGSGGLWYAFGRMIAGLVDDEQAQDISEMLSTTFKQRLVNIMDQAHHFGALGAANSGGAGQGQAGEDFREGLDGTERELFALAQESAKLTKQWFE 185          
BLAST of Gvermi12106.t1 vs. uniprot
Match: A0A067MYA9_9AGAM (DNA replication complex GINS protein PSF3 n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MYA9_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 3.430e-9
Identity = 55/203 (27.09%), Postives = 89/203 (43.84%), Query Frame = 0
Query:    2 EDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKS---YFTLGVRLAKLLVDVA---LPGALSRAFAARCWGITDSA-------------AFSGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKE 185
            +DY+SID ILA + ++  TF+ D  N+ YL+                       +KD+    ++ LP WLA +L  +++V  ++P  F  +  + L  + R V L+S+      +++ G  + +LL +     L   L + F AR   + D A               SGD G     G + +E ELF  A   A AT+ W E
Sbjct:    3 DDYYSIDAILADNQKIQCTFKLDVPNLGYLEGGE--------------------EKDIKTNSKIQLPHWLAPTLLYQDWVDFAIPPPFSLRVRKALNAEPRHVRLSSLVGGGGQWYSFGRMIVELLQEPQSEELAKVLQQTFHARLVDLMDQAQNFGGAAGSMGGAVGSGDVGDDFREGLEGVERELFTLAQDSARATKLWYE 185          
BLAST of Gvermi12106.t1 vs. uniprot
Match: F0WWF5_9STRA (Uncharacterized protein AlNc14C321G10589 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWF5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.980e-9
Identity = 38/123 (30.89%), Postives = 60/123 (48.78%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELDNNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVDTRTVNLASMCKSYFTLGVRLAKL 123
            M DY+SI +ILAG+ RV  TF+ D    AYLD   + +                   D+    +V LP WLA +L  R+ V++ +P+ F ++  + L+     VNL++ C   + +G  L  L
Sbjct:    1 MSDYYSIHEILAGEERVNCTFQTDAQECAYLDPSSLGD-------------------DIKAGSEVDLPLWLATTLIRRDDVNVQVPQYFTRRFSRMLKAGPSAVNLSNQCFYLYQVGKELLPL 104          
The following BLAST results are available for this feature:
BLAST of Gvermi12106.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JA98_9FLOR1.950e-8960.18DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
R7Q771_CHOCR2.410e-5748.39DNA replication complex GINS protein psf3 n=1 Tax=... [more]
A0A0L0DJQ1_THETB4.560e-1530.73DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A507CUX0_9FUNG1.810e-1233.57DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A2T9YWG2_9FUNG2.290e-1230.05DNA replication complex GINS protein PSF3 n=2 Tax=... [more]
A0A060SPE9_PYCCI1.850e-1027.72DNA replication complex GINS protein PSF3 n=2 Tax=... [more]
UPI000C6D2E905.910e-1029.72DNA replication complex GINS protein PSF3-like n=1... [more]
UPI0004407F872.560e-927.72GINS complex, Psf3 component n=1 Tax=Fomitiporia m... [more]
A0A067MYA9_9AGAM3.430e-927.09DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
F0WWF5_9STRA4.980e-930.89Uncharacterized protein AlNc14C321G10589 n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038437GINS complex, subunit Psf3 superfamilyGENE3D1.20.58.2050coord: 2..187
e-value: 1.3E-36
score: 127.8
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 66..126
e-value: 2.3E-6
score: 28.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..219
NoneNo IPR availableCDDcd11713GINS_A_psf3coord: 80..186
e-value: 2.59151E-15
score: 67.2911
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 1..86
IPR010492GINS complex, subunit Psf3PANTHERPTHR22768UNCHARACTERIZEDcoord: 1..201
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 85..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3429575..3430234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1Gvermi12106.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3429575..3430234 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELD
NNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVD
TRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAF
SGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGK
RSREELGSPVTPSTRPRTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038437GINS_Psf3_sf
IPR021151GINS_A
IPR010492GINS_Psf3
IPR036224GINS_bundle-like_dom_sf