Gvermi12105.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12105.t1
Unique NameGvermi12105.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Homology
BLAST of Gvermi12105.t1 vs. uniprot
Match: R7QPX9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPX9_CHOCR)

HSP 1 Score: 166 bits (421), Expect = 6.910e-46
Identity = 111/262 (42.37%), Postives = 158/262 (60.31%), Query Frame = 0
Query:   52 QASLSSKDVSPKPKDS---KERKSRAGAPNYSAEDVSALLTFVEEIEPTGPSNWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVRRAKIIARAIHNKYASMMMEHEGEQEAQNSDQKSKHESKDNTDKPEAPESDVGDEE----VIVTRAKKRKKGAHGAA-VKLTSEEILVNYVG----QMSRHIGSIAKTLTTEISKTAEKDAAHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISAK 301
            + S+ S + S +P+ S   + + +RAGAPNYS EDV+ALL FVEE+EP G ++WA VA KF +WA DNERP RE  SLRNKFDKL NSK K G+P+CP+ VRRAK I RAI NK A+M  E   ++E    D  S+ E +       +    VG E+     + +  +KRK  A G    +   E+ +  ++      MS HIG+I+K++ +E +      +   +KED+  IVK EVR+SM  TN +L ++N +L+ I +K
Sbjct:   55 RTSIPSPNPSTQPRRSNRSRTKATRAGAPNYSREDVTALLDFVEEVEPLGSNHWAIVARKFRKWAEDNERPEREFESLRNKFDKLCNSKKKTGNPSCPDPVRRAKGIGRAIQNKCAAMKREGSSDEE----DNGSRIEGESGDGAVSSGAVVVGTEDSCEGTLGSMKRKRKIAATGTRRTRFRGEDAIAGHIAGHIADMSEHIGAISKSIVSEQNVVFR--SLGFTKEDVVTIVKTEVRKSMAPTNAMLHQINNLLQTIVSK 310          
BLAST of Gvermi12105.t1 vs. uniprot
Match: R7Q5B2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5B2_CHOCR)

HSP 1 Score: 147 bits (372), Expect = 3.900e-39
Identity = 102/255 (40.00%), Postives = 145/255 (56.86%), Query Frame = 0
Query:   52 QASLSSKDVSPKPKDSKERKSRAGAPNYSAEDVSALLTFVEEIEPTGPSNWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVRRAKIIARAIHNKYASMMMEHEGEQEAQNSDQKSKHESKDNTDKPEAPESDV----GDE-EVIVTRAKKRKKGAHGAAVKLTSEEILVNYVGQMSRHIGSIAKTLTTEISKTAEKDAAHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISAK 301
            Q  LS+ + S K    K +KSRAG PNY+ ED+ ALL F  E E  G ++WA+VA KFS+WA  NERP R+  SL++KFDKLAN+K K GDP+CP  VRRAK IAR I NK A+  +  +               S D   +  A ESD     GD  +V+  RA+KR  GA G A     EE  + +V ++S  + +I+K   +        ++ +L++  +  IV+ EV+ESM  TN +L++M  ++ + S K
Sbjct:   38 QEELSTGEGSNK----KAKKSRAGVPNYNKEDIDALLDFTSEAESLGANHWAWVAQKFSRWAKANERPVRDGDSLKHKFDKLANTKKKTGDPSCPPHVRRAKHIARDILNKCAATSVSGD---------------SSDGNQEANAGESDKAGTGGDSGKVVGERARKRDTGATGVAKAQQIEERYLEHVAEISACVQTISKAFESS-------ESTNLTQSSVVSIVRHEVQESMRPTNALLSEMMSIIRSQSNK 266          
BLAST of Gvermi12105.t1 vs. uniprot
Match: A0A7S2ZZA3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZZA3_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 7.030e-7
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0
Query:   73 RAGAPNYSAEDVSALLTFVEEIEPTGPSNWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVRRAKIIARAI 159
            RAG PN+S E+++ LL  +E     G   W  VA K+++W+       R   SL+NKFDK+ NS++       P+ VRRAK + + I
Sbjct:    9 RAGIPNFSDEEINYLLYLIEANASLGLELWPLVASKYAKWSQAQAIYPRSLKSLKNKFDKIVNSRVTPE----PQYVRRAKQLWKRI 91          
The following BLAST results are available for this feature:
BLAST of Gvermi12105.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QPX9_CHOCR6.910e-4642.37Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q5B2_CHOCR3.900e-3940.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZZA3_9RHOD7.030e-737.93Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR34409FAMILY NOT NAMEDcoord: 74..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3428167..3429096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12105.t1Gvermi12105.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3428167..3429096 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MDTPTLSNLKSPDQPSDQPASPRQRTLRPIACRPIPPVAIIPVPYPDVVQ
PQASLSSKDVSPKPKDSKERKSRAGAPNYSAEDVSALLTFVEEIEPTGPS
NWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVR
RAKIIARAIHNKYASMMMEHEGEQEAQNSDQKSKHESKDNTDKPEAPESD
VGDEEVIVTRAKKRKKGAHGAAVKLTSEEILVNYVGQMSRHIGSIAKTLT
TEISKTAEKDAAHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISA
KLNGSQSGV*
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