Gvermi11477.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi11477.t1
Unique NameGvermi11477.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length496
Homology
[Close]
BLAST of Gvermi11477.t1 vs. uniprot
Match: A0A2V3ITF6_9FLOR (JmjC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITF6_9FLOR)

HSP 1 Score: 536 bits (1381), Expect = 3.200e-186
Identity = 257/433 (59.35%), Postives = 330/433 (76.21%), Query Frame = 0 
Query:   45 MQMLLNDEDTFETFFSHNFERHVLHIDDSYRSNRPLWMRMHRRFVPNHDIDTILNISSQTFSLSIPTDLEVTRYNFSNFIRQAFEPAAHAPHLKVLQHAFRDGFELVLHRMQTRSASIARFTDSLSAFWHVSVEASLHFCPPSISTKHLRDPRAATLNNGELFVVVLDGQLMASVHETVRDFPLPSETGPNSHTVLSSLQNPSPKTFSLDEGDVLYVPRGSASYFLGKNSPTLYVSFHIRTDQVSATMVLRSMLSAAEKRSEGPLGQRAASQLQWFDIVDCAMRVAHDLVPPLRRFFPLSGAIIDALEDAGKPVGQELAVDVLQKFVVSAQNAFFDPFIEAVTAGDVAVDDSLFKWAEEISSQRQESNSYRQAKEMFRHCLDWLGRQSDAPSDGVSQLTLDWFTALENRRKSELEARHKAFMAQEIKVDTTVD 477
            M +LL+DEDT+ETFFS+NFE H +H+DDSYRS+R  WM++HRRF+PNHDID +LN SSQ    SI  D+++TR+N   F+R+   P   AP L  LQ  F++GFEL+L+RM  RS+ +ARF DSLS+FWHV VE+SLHFCPPS S KH  DP AATL  GE FVVVLD +L A VHE V+ FPL  +   ++H++LS ++NPSP+TF+LDEGD+LYVPRGSA   + +N+P LY+SFH+RTD++ A+ VL+S+  AA+KRSEGPL Q A  QL W D+V C +R+AH+L+ PLRRF PLSG I +ALEDAGKP GQE+AVDVLQKFVV+A +A FDPFIEAV   ++ VDD+LF WA ++  +++ S +Y QAKEMF+ C+DWLGRQSDAP+DGVSQL L WF+ LE RR+ E + R  AF  Q I+ D   D
Sbjct:    1 MNLLLHDEDTYETFFSYNFEHHSMHVDDSYRSDRSKWMKIHRRFIPNHDIDKLLNTSSQMLPFSISADVQLTRFNSGKFVREYLAPGK-APALPTLQSYFKEGFELILNRMHLRSSGVARFADSLSSFWHVRVESSLHFCPPSSSMKHSSDPLAATLRAGETFVVVLDDELAAYVHEDVQSFPLLDDLATDAHSILSRVRNPSPRTFALDEGDMLYVPRGSAFNIVARNTPALYISFHVRTDELPASSVLQSISRAAQKRSEGPLDQFATPQLPWTDVVSCTIRLAHELISPLRRFLPLSGGISEALEDAGKPTGQEVAVDVLQKFVVAAVDALFDPFIEAVAQKEIDVDDALFSWANDLFIRKESSVTYGQAKEMFKLCMDWLGRQSDAPNDGVSQLILTWFSELEERRRIEYKERISAFSIQGIQEDAEDD 432
The following BLAST results are available for this feature:
BLAST of Gvermi11477.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ITF6_9FLOR3.200e-18659.35JmjC domain-containing protein n=1 Tax=Gracilariop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.650Cupincoord: 32..285
e-value: 9.0E-15
score: 56.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..495
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:506857..508344 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1Gvermi11477.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 506857..508344 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=496bp
MLILIALLLVSPLSFATIDKHPLSKCTLKQPTPTEASKPPHLPAMQMLLN
DEDTFETFFSHNFERHVLHIDDSYRSNRPLWMRMHRRFVPNHDIDTILNI
SSQTFSLSIPTDLEVTRYNFSNFIRQAFEPAAHAPHLKVLQHAFRDGFEL
VLHRMQTRSASIARFTDSLSAFWHVSVEASLHFCPPSISTKHLRDPRAAT
LNNGELFVVVLDGQLMASVHETVRDFPLPSETGPNSHTVLSSLQNPSPKT
FSLDEGDVLYVPRGSASYFLGKNSPTLYVSFHIRTDQVSATMVLRSMLSA
AEKRSEGPLGQRAASQLQWFDIVDCAMRVAHDLVPPLRRFFPLSGAIIDA
LEDAGKPVGQELAVDVLQKFVVSAQNAFFDPFIEAVTAGDVAVDDSLFKW
AEEISSQRQESNSYRQAKEMFRHCLDWLGRQSDAPSDGVSQLTLDWFTAL
ENRRKSELEARHKAFMAQEIKVDTTVDKGLICPDDEDFCALAASS*
back to top