Gvermi11477.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11477.t1
Unique NameGvermi11477.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:506857..508344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1297742.A176_05102
PFAMsCupin_4
Max annot lvl2|Bacteria
Evalue0.000155
EggNOG OGsCOG2850@1|root,COG2850@2|Bacteria
Descriptionpeptidyl-arginine hydroxylation
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11477Gvermi11477Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 506857..508344 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1.start1Gvermi11477.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 506857..506859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1.CDS1Gvermi11477.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 506857..508344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1.exon1Gvermi11477.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 506857..508344 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1.stop1Gvermi11477.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 508342..508344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11477.t1Gvermi11477.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 506857..508344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=496bp
MLILIALLLVSPLSFATIDKHPLSKCTLKQPTPTEASKPPHLPAMQMLLN
DEDTFETFFSHNFERHVLHIDDSYRSNRPLWMRMHRRFVPNHDIDTILNI
SSQTFSLSIPTDLEVTRYNFSNFIRQAFEPAAHAPHLKVLQHAFRDGFEL
VLHRMQTRSASIARFTDSLSAFWHVSVEASLHFCPPSISTKHLRDPRAAT
LNNGELFVVVLDGQLMASVHETVRDFPLPSETGPNSHTVLSSLQNPSPKT
FSLDEGDVLYVPRGSASYFLGKNSPTLYVSFHIRTDQVSATMVLRSMLSA
AEKRSEGPLGQRAASQLQWFDIVDCAMRVAHDLVPPLRRFFPLSGAIIDA
LEDAGKPVGQELAVDVLQKFVVSAQNAFFDPFIEAVTAGDVAVDDSLFKW
AEEISSQRQESNSYRQAKEMFRHCLDWLGRQSDAPSDGVSQLTLDWFTAL
ENRRKSELEARHKAFMAQEIKVDTTVDKGLICPDDEDFCALAASS*
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spliced messenger RNA

>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:506857..508344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATCCTTATTGCTCTCCTTCTCGTCTCCCCCTTGTCCTTCGCCAC
CATCGACAAGCACCCATTGTCCAAATGTACCCTCAAACAGCCGACGCCCA
CTGAGGCTTCTAAACCACCACATCTCCCGGCAATGCAAATGCTCCTCAAT
GACGAAGACACATTCGAGACTTTCTTTTCGCACAATTTTGAGCGTCATGT
TCTTCACATCGATGATTCCTATCGCTCCAATCGACCTCTTTGGATGCGAA
TGCACCGCCGCTTCGTCCCGAATCATGACATTGATACCATTTTGAACATC
TCCTCACAAACATTTTCCCTTTCCATTCCTACTGATCTTGAGGTCACTCG
CTATAATTTCTCCAACTTCATTCGCCAAGCTTTTGAACCTGCCGCCCACG
CTCCTCATTTAAAAGTCTTACAGCATGCCTTCCGAGACGGCTTCGAACTT
GTCCTACACCGTATGCAGACGCGCTCCGCATCAATAGCCCGCTTTACCGA
CTCCTTGTCCGCGTTTTGGCACGTCTCCGTTGAGGCTTCTCTCCACTTCT
GTCCACCAAGCATATCGACAAAACATTTGCGAGATCCCCGCGCAGCTACT
TTGAACAATGGTGAGCTGTTCGTCGTGGTCCTGGATGGCCAATTGATGGC
CAGCGTTCATGAAACAGTTCGTGATTTTCCGCTTCCATCTGAAACCGGTC
CCAACTCTCACACCGTTCTTTCATCTCTTCAAAACCCTTCACCCAAGACT
TTCTCACTGGATGAGGGAGATGTTTTGTACGTCCCACGGGGTTCTGCTTC
CTACTTTTTGGGGAAAAATTCCCCAACCCTCTATGTAAGCTTCCATATTC
GCACTGACCAAGTGTCGGCAACAATGGTCTTGCGATCGATGCTGTCCGCT
GCTGAGAAAAGGTCAGAAGGGCCATTGGGACAGCGTGCAGCGTCTCAGCT
GCAATGGTTTGATATAGTAGACTGTGCCATGCGTGTGGCACACGACCTGG
TTCCCCCTTTAAGACGATTCTTTCCTCTTTCCGGTGCGATAATCGATGCG
CTTGAAGATGCAGGGAAACCTGTAGGTCAAGAACTTGCTGTCGATGTCCT
GCAAAAGTTCGTCGTGTCTGCCCAAAACGCGTTTTTCGACCCATTCATTG
AGGCTGTAACGGCTGGTGATGTTGCAGTTGACGATTCATTGTTCAAATGG
GCCGAGGAAATTTCCAGCCAGAGACAAGAATCAAACTCTTATCGTCAAGC
AAAGGAAATGTTTAGGCATTGCTTAGATTGGTTGGGAAGGCAAAGCGATG
CTCCCAGCGACGGGGTTTCGCAGCTAACATTAGATTGGTTCACAGCCTTG
GAAAATAGAAGAAAGTCGGAGCTGGAAGCACGACACAAAGCATTTATGGC
TCAAGAAATCAAAGTCGATACAACAGTAGATAAAGGTCTGATATGCCCAG
ATGACGAAGATTTTTGCGCTCTGGCTGCGAGTTCATAA
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protein sequence of Gvermi11477.t1

>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=496bp
MLILIALLLVSPLSFATIDKHPLSKCTLKQPTPTEASKPPHLPAMQMLLN
DEDTFETFFSHNFERHVLHIDDSYRSNRPLWMRMHRRFVPNHDIDTILNI
SSQTFSLSIPTDLEVTRYNFSNFIRQAFEPAAHAPHLKVLQHAFRDGFEL
VLHRMQTRSASIARFTDSLSAFWHVSVEASLHFCPPSISTKHLRDPRAAT
LNNGELFVVVLDGQLMASVHETVRDFPLPSETGPNSHTVLSSLQNPSPKT
FSLDEGDVLYVPRGSASYFLGKNSPTLYVSFHIRTDQVSATMVLRSMLSA
AEKRSEGPLGQRAASQLQWFDIVDCAMRVAHDLVPPLRRFFPLSGAIIDA
LEDAGKPVGQELAVDVLQKFVVSAQNAFFDPFIEAVTAGDVAVDDSLFKW
AEEISSQRQESNSYRQAKEMFRHCLDWLGRQSDAPSDGVSQLTLDWFTAL
ENRRKSELEARHKAFMAQEIKVDTTVDKGLICPDDEDFCALAASS*
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mRNA from alignment at ScGOVlb_3404:506857..508344+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:506857..508344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCATCCTTATTGCTCTCCTTCTCGTCTCCCCCTTGTCCTTCGCCAC
CATCGACAAGCACCCATTGTCCAAATGTACCCTCAAACAGCCGACGCCCA
CTGAGGCTTCTAAACCACCACATCTCCCGGCAATGCAAATGCTCCTCAAT
GACGAAGACACATTCGAGACTTTCTTTTCGCACAATTTTGAGCGTCATGT
TCTTCACATCGATGATTCCTATCGCTCCAATCGACCTCTTTGGATGCGAA
TGCACCGCCGCTTCGTCCCGAATCATGACATTGATACCATTTTGAACATC
TCCTCACAAACATTTTCCCTTTCCATTCCTACTGATCTTGAGGTCACTCG
CTATAATTTCTCCAACTTCATTCGCCAAGCTTTTGAACCTGCCGCCCACG
CTCCTCATTTAAAAGTCTTACAGCATGCCTTCCGAGACGGCTTCGAACTT
GTCCTACACCGTATGCAGACGCGCTCCGCATCAATAGCCCGCTTTACCGA
CTCCTTGTCCGCGTTTTGGCACGTCTCCGTTGAGGCTTCTCTCCACTTCT
GTCCACCAAGCATATCGACAAAACATTTGCGAGATCCCCGCGCAGCTACT
TTGAACAATGGTGAGCTGTTCGTCGTGGTCCTGGATGGCCAATTGATGGC
CAGCGTTCATGAAACAGTTCGTGATTTTCCGCTTCCATCTGAAACCGGTC
CCAACTCTCACACCGTTCTTTCATCTCTTCAAAACCCTTCACCCAAGACT
TTCTCACTGGATGAGGGAGATGTTTTGTACGTCCCACGGGGTTCTGCTTC
CTACTTTTTGGGGAAAAATTCCCCAACCCTCTATGTAAGCTTCCATATTC
GCACTGACCAAGTGTCGGCAACAATGGTCTTGCGATCGATGCTGTCCGCT
GCTGAGAAAAGGTCAGAAGGGCCATTGGGACAGCGTGCAGCGTCTCAGCT
GCAATGGTTTGATATAGTAGACTGTGCCATGCGTGTGGCACACGACCTGG
TTCCCCCTTTAAGACGATTCTTTCCTCTTTCCGGTGCGATAATCGATGCG
CTTGAAGATGCAGGGAAACCTGTAGGTCAAGAACTTGCTGTCGATGTCCT
GCAAAAGTTCGTCGTGTCTGCCCAAAACGCGTTTTTCGACCCATTCATTG
AGGCTGTAACGGCTGGTGATGTTGCAGTTGACGATTCATTGTTCAAATGG
GCCGAGGAAATTTCCAGCCAGAGACAAGAATCAAACTCTTATCGTCAAGC
AAAGGAAATGTTTAGGCATTGCTTAGATTGGTTGGGAAGGCAAAGCGATG
CTCCCAGCGACGGGGTTTCGCAGCTAACATTAGATTGGTTCACAGCCTTG
GAAAATAGAAGAAAGTCGGAGCTGGAAGCACGACACAAAGCATTTATGGC
TCAAGAAATCAAAGTCGATACAACAGTAGATAAAGGTCTGATATGCCCAG
ATGACGAAGATTTTTGCGCTCTGGCTGCGAGTTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:506857..508344+

>Gvermi11477.t1 ID=Gvermi11477.t1|Name=Gvermi11477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:506857..508344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCATCCTTATTGCTCTCCTTCTCGTCTCCCCCTTGTCCTTCGCCAC
CATCGACAAGCACCCATTGTCCAAATGTACCCTCAAACAGCCGACGCCCA
CTGAGGCTTCTAAACCACCACATCTCCCGGCAATGCAAATGCTCCTCAAT
GACGAAGACACATTCGAGACTTTCTTTTCGCACAATTTTGAGCGTCATGT
TCTTCACATCGATGATTCCTATCGCTCCAATCGACCTCTTTGGATGCGAA
TGCACCGCCGCTTCGTCCCGAATCATGACATTGATACCATTTTGAACATC
TCCTCACAAACATTTTCCCTTTCCATTCCTACTGATCTTGAGGTCACTCG
CTATAATTTCTCCAACTTCATTCGCCAAGCTTTTGAACCTGCCGCCCACG
CTCCTCATTTAAAAGTCTTACAGCATGCCTTCCGAGACGGCTTCGAACTT
GTCCTACACCGTATGCAGACGCGCTCCGCATCAATAGCCCGCTTTACCGA
CTCCTTGTCCGCGTTTTGGCACGTCTCCGTTGAGGCTTCTCTCCACTTCT
GTCCACCAAGCATATCGACAAAACATTTGCGAGATCCCCGCGCAGCTACT
TTGAACAATGGTGAGCTGTTCGTCGTGGTCCTGGATGGCCAATTGATGGC
CAGCGTTCATGAAACAGTTCGTGATTTTCCGCTTCCATCTGAAACCGGTC
CCAACTCTCACACCGTTCTTTCATCTCTTCAAAACCCTTCACCCAAGACT
TTCTCACTGGATGAGGGAGATGTTTTGTACGTCCCACGGGGTTCTGCTTC
CTACTTTTTGGGGAAAAATTCCCCAACCCTCTATGTAAGCTTCCATATTC
GCACTGACCAAGTGTCGGCAACAATGGTCTTGCGATCGATGCTGTCCGCT
GCTGAGAAAAGGTCAGAAGGGCCATTGGGACAGCGTGCAGCGTCTCAGCT
GCAATGGTTTGATATAGTAGACTGTGCCATGCGTGTGGCACACGACCTGG
TTCCCCCTTTAAGACGATTCTTTCCTCTTTCCGGTGCGATAATCGATGCG
CTTGAAGATGCAGGGAAACCTGTAGGTCAAGAACTTGCTGTCGATGTCCT
GCAAAAGTTCGTCGTGTCTGCCCAAAACGCGTTTTTCGACCCATTCATTG
AGGCTGTAACGGCTGGTGATGTTGCAGTTGACGATTCATTGTTCAAATGG
GCCGAGGAAATTTCCAGCCAGAGACAAGAATCAAACTCTTATCGTCAAGC
AAAGGAAATGTTTAGGCATTGCTTAGATTGGTTGGGAAGGCAAAGCGATG
CTCCCAGCGACGGGGTTTCGCAGCTAACATTAGATTGGTTCACAGCCTTG
GAAAATAGAAGAAAGTCGGAGCTGGAAGCACGACACAAAGCATTTATGGC
TCAAGAAATCAAAGTCGATACAACAGTAGATAAAGGTCTGATATGCCCAG
ATGACGAAGATTTTTGCGCTCTGGCTGCGAGTTCATAA
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