Gvermi8860.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8860.t1
Unique NameGvermi8860.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length70
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:287388..287597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1469607.KK073768_gene1562
Max annot lvl1117|Cyanobacteria
Evalue5.99e-10
EggNOG OGs2E5IP@1|root,330A2@2|Bacteria,1G9N8@1117|Cyanobacteria,1HPT6@1161|Nostocales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8860Gvermi8860Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 287388..287597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8860.t1.stop1Gvermi8860.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 287388..287390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8860.t1.CDS1Gvermi8860.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 287388..287597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8860.t1.exon1Gvermi8860.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 287388..287597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8860.t1.start1Gvermi8860.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 287595..287597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8860.t1Gvermi8860.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 287388..287597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8860.t1 ID=Gvermi8860.t1|Name=Gvermi8860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=70bp
MSLLPFIPNWLVLGAWFYGAYRFYRGFHRTSYQSSFRLPLALAWPLLFAV
NPSYRSNFTKSLRASPDDL*
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spliced messenger RNA

>Gvermi8860.t1 ID=Gvermi8860.t1|Name=Gvermi8860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp|location=Sequence derived from alignment at ScGOVlb_2241:287388..287597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGCTGCCCTTTATTCCCAACTGGCTCGTGCTGGGCGCCTGGTT
CTACGGCGCCTACCGCTTTTACCGCGGCTTCCACCGCACGTCGTACCAGA
GCTCGTTCCGCCTGCCGCTGGCGCTGGCCTGGCCCCTGCTCTTCGCCGTC
AACCCCTCGTACCGCTCCAACTTCACCAAGAGCCTCCGCGCCTCCCCGGA
CGACCTTTGA
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protein sequence of Gvermi8860.t1

>Gvermi8860.t1 ID=Gvermi8860.t1|Name=Gvermi8860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=70bp
MSLLPFIPNWLVLGAWFYGAYRFYRGFHRTSYQSSFRLPLALAWPLLFAV
NPSYRSNFTKSLRASPDDL*
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mRNA from alignment at ScGOVlb_2241:287388..287597-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8860.t1 ID=Gvermi8860.t1|Name=Gvermi8860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp|location=Sequence derived from alignment at ScGOVlb_2241:287388..287597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTGCTGCCCTTTATTCCCAACTGGCTCGTGCTGGGCGCCTGGTT
CTACGGCGCCTACCGCTTTTACCGCGGCTTCCACCGCACGTCGTACCAGA
GCTCGTTCCGCCTGCCGCTGGCGCTGGCCTGGCCCCTGCTCTTCGCCGTC
AACCCCTCGTACCGCTCCAACTTCACCAAGAGCCTCCGCGCCTCCCCGGA
CGACCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:287388..287597-

>Gvermi8860.t1 ID=Gvermi8860.t1|Name=Gvermi8860.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=210bp|location=Sequence derived from alignment at ScGOVlb_2241:287388..287597- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCTGCTGCCCTTTATTCCCAACTGGCTCGTGCTGGGCGCCTGGTT
CTACGGCGCCTACCGCTTTTACCGCGGCTTCCACCGCACGTCGTACCAGA
GCTCGTTCCGCCTGCCGCTGGCGCTGGCCTGGCCCCTGCTCTTCGCCGTC
AACCCCTCGTACCGCTCCAACTTCACCAAGAGCCTCCGCGCCTCCCCGGA
CGACCTTTGA
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