Gvermi8848.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8848.t1
Unique Name	Gvermi8848.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2241	contig	ScGOVlb_2241:261460..262554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_021830.1
Preferred name	psd-1
PFAMs	PS_Dcarbxylase
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00299
KEGG ko	ko:K01613
KEGG Reaction	R02055
KEGG Pathway	ko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG Module	M00093
Evalue	2.56e-47
EggNOG OGs	COG0688@1\|root,KOG2420@2759\|Eukaryota,38E13@33154\|Opisthokonta,3BDPJ@33208\|Metazoa,3CU2W@33213\|Bilateria
EC	4.1.1.65
Description	phosphatidylserine decarboxylase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8848	Gvermi8848	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2241 261460..262554 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8848.t1.start1	Gvermi8848.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2241 261460..261462 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8848.t1.CDS1	Gvermi8848.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2241 261460..262554 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8848.t1.exon1	Gvermi8848.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2241 261460..262554 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8848.t1.stop1	Gvermi8848.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2241 262552..262554 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8848.t1	Gvermi8848.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2241 261460..262554 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2241:261460..262554+
coding sequence from alignment at ScGOVlb_2241:261460..262554+

mRNA sequence

>Gvermi8848.t1 ID=Gvermi8848.t1|Name=Gvermi8848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=365bp
MRVARKTNSNTHGRMFGRFVLLSTGVGIGALAAAHWKEGPKVSKKAHVLR
AVPLNVIGVAAHYAASVPIPRPFRNAAYSQYCSFVGCDPSEADKNLEEFR
SLAEFFARGIRADLRPIDQQGNMIVPCDGRVLAAGPVGAYGSIDVKGVKY
RIRDLVGANEREPLAVTSVAVADREESGSRLWYVVIHMSPGHCHRFVSPT
KWVVKDRRNIEGYLLWMNPGIEGLYTQNERVAVVGRWDYGLLAVAAVGAA
GRGSIVLDADGEPFQPRIRPSLNRVSVRTFEDDKVLKRGEALGQFRLGSA
IVLLFEAPEASLRFAVQEGDLVKLGQRLVSVEGSPSKEVKLESMDLTTKK
STVSPSRARFRRAW*

spliced messenger RNA

>Gvermi8848.t1 ID=Gvermi8848.t1|Name=Gvermi8848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_2241:261460..262554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGTCGCTCGCAAAACCAATTCCAACACGCATGGGAGGATGTTTGG
GCGTTTCGTTTTGCTGAGCACGGGGGTCGGCATTGGAGCTTTGGCTGCCG
CTCACTGGAAGGAAGGCCCAAAAGTATCAAAGAAAGCACACGTCCTTCGC
GCAGTTCCTTTGAATGTGATTGGGGTTGCAGCCCACTACGCCGCTTCCGT
TCCGATCCCCCGGCCGTTCAGAAACGCTGCATACTCTCAATACTGTTCCT
TCGTAGGGTGTGATCCATCGGAAGCAGATAAGAATCTGGAAGAATTCCGC
TCTCTCGCGGAGTTTTTCGCCCGAGGAATTCGGGCCGATCTGCGACCAAT
AGACCAACAAGGAAATATGATCGTGCCATGCGACGGTCGTGTTCTCGCAG
CTGGACCCGTTGGAGCGTACGGGTCGATTGACGTGAAAGGCGTGAAATAC
AGGATTCGGGATCTTGTGGGGGCAAATGAGAGAGAGCCATTAGCTGTCAC
CTCTGTTGCTGTCGCGGATCGTGAAGAAAGTGGATCAAGGCTTTGGTATG
TCGTGATTCATATGAGTCCAGGGCACTGCCACAGATTCGTTTCGCCCACA
AAATGGGTTGTAAAAGATAGAAGAAACATAGAAGGGTACCTGCTTTGGAT
GAATCCAGGAATCGAGGGCTTGTACACGCAGAATGAACGAGTTGCAGTGG
TTGGGAGATGGGATTATGGCCTACTGGCGGTTGCAGCTGTGGGCGCTGCC
GGTAGAGGATCCATTGTTTTAGATGCCGATGGCGAACCGTTTCAACCCCG
TATACGTCCAAGTCTAAATCGGGTGTCTGTACGCACCTTTGAAGATGACA
AAGTATTGAAGCGAGGTGAAGCACTTGGACAGTTTCGCCTGGGATCTGCC
ATCGTGCTCCTATTTGAGGCCCCTGAGGCTAGCTTAAGATTTGCTGTGCA
AGAAGGTGATTTGGTCAAATTGGGGCAGAGACTGGTTTCCGTCGAGGGCT
CGCCCTCAAAGGAAGTCAAATTAGAATCAATGGATTTGACAACGAAGAAA
AGCACTGTATCGCCTTCACGAGCGAGATTTAGGCGGGCGTGGTGA

protein sequence of Gvermi8848.t1

>Gvermi8848.t1 ID=Gvermi8848.t1|Name=Gvermi8848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=365bp
MRVARKTNSNTHGRMFGRFVLLSTGVGIGALAAAHWKEGPKVSKKAHVLR
AVPLNVIGVAAHYAASVPIPRPFRNAAYSQYCSFVGCDPSEADKNLEEFR
SLAEFFARGIRADLRPIDQQGNMIVPCDGRVLAAGPVGAYGSIDVKGVKY
RIRDLVGANEREPLAVTSVAVADREESGSRLWYVVIHMSPGHCHRFVSPT
KWVVKDRRNIEGYLLWMNPGIEGLYTQNERVAVVGRWDYGLLAVAAVGAA
GRGSIVLDADGEPFQPRIRPSLNRVSVRTFEDDKVLKRGEALGQFRLGSA
IVLLFEAPEASLRFAVQEGDLVKLGQRLVSVEGSPSKEVKLESMDLTTKK
STVSPSRARFRRAW*

mRNA from alignment at ScGOVlb_2241:261460..262554+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8848.t1 ID=Gvermi8848.t1|Name=Gvermi8848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_2241:261460..262554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGTCGCTCGCAAAACCAATTCCAACACGCATGGGAGGATGTTTGG
GCGTTTCGTTTTGCTGAGCACGGGGGTCGGCATTGGAGCTTTGGCTGCCG
CTCACTGGAAGGAAGGCCCAAAAGTATCAAAGAAAGCACACGTCCTTCGC
GCAGTTCCTTTGAATGTGATTGGGGTTGCAGCCCACTACGCCGCTTCCGT
TCCGATCCCCCGGCCGTTCAGAAACGCTGCATACTCTCAATACTGTTCCT
TCGTAGGGTGTGATCCATCGGAAGCAGATAAGAATCTGGAAGAATTCCGC
TCTCTCGCGGAGTTTTTCGCCCGAGGAATTCGGGCCGATCTGCGACCAAT
AGACCAACAAGGAAATATGATCGTGCCATGCGACGGTCGTGTTCTCGCAG
CTGGACCCGTTGGAGCGTACGGGTCGATTGACGTGAAAGGCGTGAAATAC
AGGATTCGGGATCTTGTGGGGGCAAATGAGAGAGAGCCATTAGCTGTCAC
CTCTGTTGCTGTCGCGGATCGTGAAGAAAGTGGATCAAGGCTTTGGTATG
TCGTGATTCATATGAGTCCAGGGCACTGCCACAGATTCGTTTCGCCCACA
AAATGGGTTGTAAAAGATAGAAGAAACATAGAAGGGTACCTGCTTTGGAT
GAATCCAGGAATCGAGGGCTTGTACACGCAGAATGAACGAGTTGCAGTGG
TTGGGAGATGGGATTATGGCCTACTGGCGGTTGCAGCTGTGGGCGCTGCC
GGTAGAGGATCCATTGTTTTAGATGCCGATGGCGAACCGTTTCAACCCCG
TATACGTCCAAGTCTAAATCGGGTGTCTGTACGCACCTTTGAAGATGACA
AAGTATTGAAGCGAGGTGAAGCACTTGGACAGTTTCGCCTGGGATCTGCC
ATCGTGCTCCTATTTGAGGCCCCTGAGGCTAGCTTAAGATTTGCTGTGCA
AGAAGGTGATTTGGTCAAATTGGGGCAGAGACTGGTTTCCGTCGAGGGCT
CGCCCTCAAAGGAAGTCAAATTAGAATCAATGGATTTGACAACGAAGAAA
AGCACTGTATCGCCTTCACGAGCGAGATTTAGGCGGGCGTGGTGA

Coding sequence (CDS) from alignment at ScGOVlb_2241:261460..262554+

>Gvermi8848.t1 ID=Gvermi8848.t1|Name=Gvermi8848.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1095bp|location=Sequence derived from alignment at ScGOVlb_2241:261460..262554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGTCGCTCGCAAAACCAATTCCAACACGCATGGGAGGATGTTTGG
GCGTTTCGTTTTGCTGAGCACGGGGGTCGGCATTGGAGCTTTGGCTGCCG
CTCACTGGAAGGAAGGCCCAAAAGTATCAAAGAAAGCACACGTCCTTCGC
GCAGTTCCTTTGAATGTGATTGGGGTTGCAGCCCACTACGCCGCTTCCGT
TCCGATCCCCCGGCCGTTCAGAAACGCTGCATACTCTCAATACTGTTCCT
TCGTAGGGTGTGATCCATCGGAAGCAGATAAGAATCTGGAAGAATTCCGC
TCTCTCGCGGAGTTTTTCGCCCGAGGAATTCGGGCCGATCTGCGACCAAT
AGACCAACAAGGAAATATGATCGTGCCATGCGACGGTCGTGTTCTCGCAG
CTGGACCCGTTGGAGCGTACGGGTCGATTGACGTGAAAGGCGTGAAATAC
AGGATTCGGGATCTTGTGGGGGCAAATGAGAGAGAGCCATTAGCTGTCAC
CTCTGTTGCTGTCGCGGATCGTGAAGAAAGTGGATCAAGGCTTTGGTATG
TCGTGATTCATATGAGTCCAGGGCACTGCCACAGATTCGTTTCGCCCACA
AAATGGGTTGTAAAAGATAGAAGAAACATAGAAGGGTACCTGCTTTGGAT
GAATCCAGGAATCGAGGGCTTGTACACGCAGAATGAACGAGTTGCAGTGG
TTGGGAGATGGGATTATGGCCTACTGGCGGTTGCAGCTGTGGGCGCTGCC
GGTAGAGGATCCATTGTTTTAGATGCCGATGGCGAACCGTTTCAACCCCG
TATACGTCCAAGTCTAAATCGGGTGTCTGTACGCACCTTTGAAGATGACA
AAGTATTGAAGCGAGGTGAAGCACTTGGACAGTTTCGCCTGGGATCTGCC
ATCGTGCTCCTATTTGAGGCCCCTGAGGCTAGCTTAAGATTTGCTGTGCA
AGAAGGTGATTTGGTCAAATTGGGGCAGAGACTGGTTTCCGTCGAGGGCT
CGCCCTCAAAGGAAGTCAAATTAGAATCAATGGATTTGACAACGAAGAAA
AGCACTGTATCGCCTTCACGAGCGAGATTTAGGCGGGCGTGGTGA