Gvermi8845.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8845.t1
Unique Name	Gvermi8845.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2241	contig	ScGOVlb_2241:253966..255738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708338.1
Preferred name	ALG9
PFAMs	DUF3445,Glyco_transf_22
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03846
KEGG Reaction	R06259,R06261
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG Module	M00055
GOs	GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006508,GO:0006511,GO:0006629,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019941,GO:0030163,GO:0030176,GO:0030433,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698
Evalue	1.63e-106
EggNOG OGs	KOG2515@1\|root,KOG2515@2759\|Eukaryota
EC	2.4.1.259,2.4.1.261
Description	dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity
COG category	M
CAZy	GT22
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8845	Gvermi8845	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2241 253966..255738 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8845.t1.start1	Gvermi8845.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2241 253966..253968 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8845.t1.CDS1	Gvermi8845.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2241 253966..255738 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8845.t1.exon1	Gvermi8845.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2241 253966..255738 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8845.t1.stop1	Gvermi8845.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2241 255736..255738 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8845.t1	Gvermi8845.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2241 253966..255738 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2241:253966..255738+
coding sequence from alignment at ScGOVlb_2241:253966..255738+

mRNA sequence

>Gvermi8845.t1 ID=Gvermi8845.t1|Name=Gvermi8845.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=591bp
MEATTKVRSTRTPPQISSLPFTLCAVLLVLIRAQAAFFSPIADCDETFNY
WEPLHFLLYGFGLQTWEYSPQYCLRSYAFLLPYAALSKFASLIHPYLLQL
TASTTPTDSKLFAFYFIRFVQALSSAFAELSLIHATYGLFGSPPAAFLFL
FLATSPGLFRSAVELLPSSFAMISLCFALSSWMKNNNFRAVLCVALATLL
GWLYAAALAIPIAIHMILQPNGVLNFLRNSVLCALLIAAFMLPVDSYMYG
KLVFAPINHVWYNVFPQQGTGSHLFGVESCNFYLLNLILNCNLAALFTAC
FPALLLLASCTSLYDISAVQLWRRIVYLSPTYVALAIFLPQPHKEERFLA
PCYPFIALIAAVAASDCLRMLSRLFGNGRVVKLIKFGVLCSTVLVSMGAG
LSRAYMQVHSFHAPLAIYRELRENELNKLANRTMNGAEEGSINICVGKEW
YRFPSSFFLPDRRFRLRFVRSSFTGLLPKPFAENENGTRLIPRGMNPYNR
EDPEQFFDWRRGGGCHYYVDFDLSHRNVHSDADEENPIPIHARHVLLRKH
FLDSDASQSGYRAFAVPYSRSKLVYGEYQVTKNIDLLPVI*

spliced messenger RNA

>Gvermi8845.t1 ID=Gvermi8845.t1|Name=Gvermi8845.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at ScGOVlb_2241:253966..255738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAACCACCAAAGTTCGCAGCACCCGCACGCCCCCACAAATAAG
CTCCCTGCCATTCACCCTGTGCGCCGTACTCCTTGTCCTCATCCGCGCAC
AAGCCGCCTTCTTCAGTCCAATCGCAGACTGCGATGAGACGTTCAACTAT
TGGGAGCCCTTGCACTTTCTGCTCTACGGATTTGGTCTGCAAACATGGGA
GTACAGTCCGCAGTATTGCCTTCGATCCTACGCCTTCCTTCTTCCCTACG
CTGCTCTTTCCAAATTTGCATCGCTTATTCATCCGTACTTGCTGCAACTC
ACCGCCTCCACCACCCCCACCGACTCAAAACTCTTTGCCTTCTATTTCAT
CCGCTTCGTCCAGGCGTTGTCGTCTGCCTTCGCCGAACTGTCCCTCATTC
ACGCAACTTACGGCCTCTTTGGATCACCGCCGGCTGCTTTCCTCTTCCTA
TTTCTCGCCACGTCCCCCGGTCTCTTCCGCAGCGCTGTCGAACTGCTGCC
CTCGTCCTTTGCCATGATCTCTCTTTGTTTTGCGCTCTCCTCATGGATGA
AAAATAACAACTTCCGCGCAGTGCTGTGCGTCGCCTTGGCTACATTGCTG
GGCTGGCTCTATGCTGCTGCGCTTGCCATTCCCATCGCCATTCACATGAT
TCTTCAACCAAACGGTGTCCTCAACTTTCTACGCAATTCTGTGCTCTGCG
CTCTGCTCATCGCTGCCTTTATGCTCCCTGTCGACTCCTACATGTACGGA
AAGTTGGTCTTTGCGCCAATCAACCATGTTTGGTACAACGTTTTTCCTCA
GCAAGGCACGGGGTCTCACCTATTTGGCGTGGAAAGTTGCAACTTCTACT
TGCTCAACCTTATCCTCAACTGCAACCTTGCCGCGCTGTTCACCGCATGT
TTTCCAGCGCTTCTGCTCCTCGCCTCTTGCACATCCCTCTATGACATTTC
CGCTGTGCAGCTGTGGAGGAGAATTGTTTATCTCTCTCCAACGTACGTGG
CTCTCGCAATCTTCTTGCCACAGCCACACAAAGAGGAGAGGTTTTTGGCC
CCTTGCTATCCATTCATAGCTCTCATTGCTGCCGTTGCTGCGTCGGACTG
CCTGAGGATGCTATCGAGGCTGTTTGGAAATGGGCGTGTGGTGAAGCTCA
TCAAGTTCGGCGTGTTGTGTTCCACAGTGCTTGTTTCGATGGGCGCTGGG
CTCAGCAGGGCATACATGCAAGTGCACTCCTTTCATGCCCCACTCGCGAT
TTATCGAGAGCTACGCGAGAACGAGTTAAACAAGCTCGCCAACCGGACAA
TGAACGGCGCGGAAGAAGGAAGCATAAACATCTGTGTGGGGAAGGAATGG
TACCGGTTTCCCTCAAGCTTCTTCCTTCCTGACCGCCGTTTCCGTCTGAG
GTTTGTGCGCTCCTCCTTCACGGGCCTGCTGCCAAAGCCATTCGCAGAGA
ACGAGAACGGAACAAGGCTCATACCTCGAGGCATGAACCCGTATAATCGA
GAGGACCCGGAGCAATTTTTCGATTGGAGGCGTGGGGGGGGTTGCCATTA
CTACGTCGACTTTGATTTGTCCCATCGCAATGTGCATAGCGATGCAGATG
AGGAAAACCCAATTCCCATACACGCTCGGCACGTACTGCTTCGGAAGCAT
TTCCTGGACAGTGATGCATCGCAATCAGGATATCGAGCGTTTGCTGTGCC
ATACTCCCGCTCAAAGCTAGTGTACGGTGAATACCAAGTAACCAAGAACA
TAGATCTCCTGCCTGTAATCTAG

protein sequence of Gvermi8845.t1

>Gvermi8845.t1 ID=Gvermi8845.t1|Name=Gvermi8845.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=591bp
MEATTKVRSTRTPPQISSLPFTLCAVLLVLIRAQAAFFSPIADCDETFNY
WEPLHFLLYGFGLQTWEYSPQYCLRSYAFLLPYAALSKFASLIHPYLLQL
TASTTPTDSKLFAFYFIRFVQALSSAFAELSLIHATYGLFGSPPAAFLFL
FLATSPGLFRSAVELLPSSFAMISLCFALSSWMKNNNFRAVLCVALATLL
GWLYAAALAIPIAIHMILQPNGVLNFLRNSVLCALLIAAFMLPVDSYMYG
KLVFAPINHVWYNVFPQQGTGSHLFGVESCNFYLLNLILNCNLAALFTAC
FPALLLLASCTSLYDISAVQLWRRIVYLSPTYVALAIFLPQPHKEERFLA
PCYPFIALIAAVAASDCLRMLSRLFGNGRVVKLIKFGVLCSTVLVSMGAG
LSRAYMQVHSFHAPLAIYRELRENELNKLANRTMNGAEEGSINICVGKEW
YRFPSSFFLPDRRFRLRFVRSSFTGLLPKPFAENENGTRLIPRGMNPYNR
EDPEQFFDWRRGGGCHYYVDFDLSHRNVHSDADEENPIPIHARHVLLRKH
FLDSDASQSGYRAFAVPYSRSKLVYGEYQVTKNIDLLPVI*

mRNA from alignment at ScGOVlb_2241:253966..255738+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8845.t1 ID=Gvermi8845.t1|Name=Gvermi8845.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at ScGOVlb_2241:253966..255738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCAACCACCAAAGTTCGCAGCACCCGCACGCCCCCACAAATAAG
CTCCCTGCCATTCACCCTGTGCGCCGTACTCCTTGTCCTCATCCGCGCAC
AAGCCGCCTTCTTCAGTCCAATCGCAGACTGCGATGAGACGTTCAACTAT
TGGGAGCCCTTGCACTTTCTGCTCTACGGATTTGGTCTGCAAACATGGGA
GTACAGTCCGCAGTATTGCCTTCGATCCTACGCCTTCCTTCTTCCCTACG
CTGCTCTTTCCAAATTTGCATCGCTTATTCATCCGTACTTGCTGCAACTC
ACCGCCTCCACCACCCCCACCGACTCAAAACTCTTTGCCTTCTATTTCAT
CCGCTTCGTCCAGGCGTTGTCGTCTGCCTTCGCCGAACTGTCCCTCATTC
ACGCAACTTACGGCCTCTTTGGATCACCGCCGGCTGCTTTCCTCTTCCTA
TTTCTCGCCACGTCCCCCGGTCTCTTCCGCAGCGCTGTCGAACTGCTGCC
CTCGTCCTTTGCCATGATCTCTCTTTGTTTTGCGCTCTCCTCATGGATGA
AAAATAACAACTTCCGCGCAGTGCTGTGCGTCGCCTTGGCTACATTGCTG
GGCTGGCTCTATGCTGCTGCGCTTGCCATTCCCATCGCCATTCACATGAT
TCTTCAACCAAACGGTGTCCTCAACTTTCTACGCAATTCTGTGCTCTGCG
CTCTGCTCATCGCTGCCTTTATGCTCCCTGTCGACTCCTACATGTACGGA
AAGTTGGTCTTTGCGCCAATCAACCATGTTTGGTACAACGTTTTTCCTCA
GCAAGGCACGGGGTCTCACCTATTTGGCGTGGAAAGTTGCAACTTCTACT
TGCTCAACCTTATCCTCAACTGCAACCTTGCCGCGCTGTTCACCGCATGT
TTTCCAGCGCTTCTGCTCCTCGCCTCTTGCACATCCCTCTATGACATTTC
CGCTGTGCAGCTGTGGAGGAGAATTGTTTATCTCTCTCCAACGTACGTGG
CTCTCGCAATCTTCTTGCCACAGCCACACAAAGAGGAGAGGTTTTTGGCC
CCTTGCTATCCATTCATAGCTCTCATTGCTGCCGTTGCTGCGTCGGACTG
CCTGAGGATGCTATCGAGGCTGTTTGGAAATGGGCGTGTGGTGAAGCTCA
TCAAGTTCGGCGTGTTGTGTTCCACAGTGCTTGTTTCGATGGGCGCTGGG
CTCAGCAGGGCATACATGCAAGTGCACTCCTTTCATGCCCCACTCGCGAT
TTATCGAGAGCTACGCGAGAACGAGTTAAACAAGCTCGCCAACCGGACAA
TGAACGGCGCGGAAGAAGGAAGCATAAACATCTGTGTGGGGAAGGAATGG
TACCGGTTTCCCTCAAGCTTCTTCCTTCCTGACCGCCGTTTCCGTCTGAG
GTTTGTGCGCTCCTCCTTCACGGGCCTGCTGCCAAAGCCATTCGCAGAGA
ACGAGAACGGAACAAGGCTCATACCTCGAGGCATGAACCCGTATAATCGA
GAGGACCCGGAGCAATTTTTCGATTGGAGGCGTGGGGGGGGTTGCCATTA
CTACGTCGACTTTGATTTGTCCCATCGCAATGTGCATAGCGATGCAGATG
AGGAAAACCCAATTCCCATACACGCTCGGCACGTACTGCTTCGGAAGCAT
TTCCTGGACAGTGATGCATCGCAATCAGGATATCGAGCGTTTGCTGTGCC
ATACTCCCGCTCAAAGCTAGTGTACGGTGAATACCAAGTAACCAAGAACA
TAGATCTCCTGCCTGTAATCTAG

Coding sequence (CDS) from alignment at ScGOVlb_2241:253966..255738+

>Gvermi8845.t1 ID=Gvermi8845.t1|Name=Gvermi8845.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1773bp|location=Sequence derived from alignment at ScGOVlb_2241:253966..255738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGCAACCACCAAAGTTCGCAGCACCCGCACGCCCCCACAAATAAG
CTCCCTGCCATTCACCCTGTGCGCCGTACTCCTTGTCCTCATCCGCGCAC
AAGCCGCCTTCTTCAGTCCAATCGCAGACTGCGATGAGACGTTCAACTAT
TGGGAGCCCTTGCACTTTCTGCTCTACGGATTTGGTCTGCAAACATGGGA
GTACAGTCCGCAGTATTGCCTTCGATCCTACGCCTTCCTTCTTCCCTACG
CTGCTCTTTCCAAATTTGCATCGCTTATTCATCCGTACTTGCTGCAACTC
ACCGCCTCCACCACCCCCACCGACTCAAAACTCTTTGCCTTCTATTTCAT
CCGCTTCGTCCAGGCGTTGTCGTCTGCCTTCGCCGAACTGTCCCTCATTC
ACGCAACTTACGGCCTCTTTGGATCACCGCCGGCTGCTTTCCTCTTCCTA
TTTCTCGCCACGTCCCCCGGTCTCTTCCGCAGCGCTGTCGAACTGCTGCC
CTCGTCCTTTGCCATGATCTCTCTTTGTTTTGCGCTCTCCTCATGGATGA
AAAATAACAACTTCCGCGCAGTGCTGTGCGTCGCCTTGGCTACATTGCTG
GGCTGGCTCTATGCTGCTGCGCTTGCCATTCCCATCGCCATTCACATGAT
TCTTCAACCAAACGGTGTCCTCAACTTTCTACGCAATTCTGTGCTCTGCG
CTCTGCTCATCGCTGCCTTTATGCTCCCTGTCGACTCCTACATGTACGGA
AAGTTGGTCTTTGCGCCAATCAACCATGTTTGGTACAACGTTTTTCCTCA
GCAAGGCACGGGGTCTCACCTATTTGGCGTGGAAAGTTGCAACTTCTACT
TGCTCAACCTTATCCTCAACTGCAACCTTGCCGCGCTGTTCACCGCATGT
TTTCCAGCGCTTCTGCTCCTCGCCTCTTGCACATCCCTCTATGACATTTC
CGCTGTGCAGCTGTGGAGGAGAATTGTTTATCTCTCTCCAACGTACGTGG
CTCTCGCAATCTTCTTGCCACAGCCACACAAAGAGGAGAGGTTTTTGGCC
CCTTGCTATCCATTCATAGCTCTCATTGCTGCCGTTGCTGCGTCGGACTG
CCTGAGGATGCTATCGAGGCTGTTTGGAAATGGGCGTGTGGTGAAGCTCA
TCAAGTTCGGCGTGTTGTGTTCCACAGTGCTTGTTTCGATGGGCGCTGGG
CTCAGCAGGGCATACATGCAAGTGCACTCCTTTCATGCCCCACTCGCGAT
TTATCGAGAGCTACGCGAGAACGAGTTAAACAAGCTCGCCAACCGGACAA
TGAACGGCGCGGAAGAAGGAAGCATAAACATCTGTGTGGGGAAGGAATGG
TACCGGTTTCCCTCAAGCTTCTTCCTTCCTGACCGCCGTTTCCGTCTGAG
GTTTGTGCGCTCCTCCTTCACGGGCCTGCTGCCAAAGCCATTCGCAGAGA
ACGAGAACGGAACAAGGCTCATACCTCGAGGCATGAACCCGTATAATCGA
GAGGACCCGGAGCAATTTTTCGATTGGAGGCGTGGGGGGGGTTGCCATTA
CTACGTCGACTTTGATTTGTCCCATCGCAATGTGCATAGCGATGCAGATG
AGGAAAACCCAATTCCCATACACGCTCGGCACGTACTGCTTCGGAAGCAT
TTCCTGGACAGTGATGCATCGCAATCAGGATATCGAGCGTTTGCTGTGCC
ATACTCCCGCTCAAAGCTAGTGTACGGTGAATACCAAGTAACCAAGAACA
TAGATCTCCTGCCTGTAATCTAG