Gvermi8808.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8808.t1
Unique NameGvermi8808.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:95445..97053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3760.EMJ11064
PFAMsDKCLD,PUA,TruB_C_2,TruB_N
Max annot lvl35493|Streptophyta
KEGG koko:K11131
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000495,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009506,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016853,GO:0016866,GO:0022613,GO:0030054,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0033979,GO:0034470,GO:0034641,GO:0034660,GO:0034964,GO:0040031,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:1901360,GO:1902494,GO:1990481,GO:1990904
Evalue2.48e-209
EggNOG OGsCOG0130@1|root,KOG2529@2759|Eukaryota,37JSV@33090|Viridiplantae,3GDKJ@35493|Streptophyta,4JK5R@91835|fabids
DescriptionH ACA ribonucleoprotein complex subunit
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8808Gvermi8808Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 95445..97053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1Gvermi8808.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 95445..97053 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1.stop1Gvermi8808.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 95445..95447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1.CDS1Gvermi8808.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 95445..96872 -
Gvermi8808.t1.CDS2Gvermi8808.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 96988..97053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1.exon1Gvermi8808.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 95445..96872 -
Gvermi8808.t1.exon2Gvermi8808.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 96988..97053 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1.intron1Gvermi8808.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 96873..96987 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8808.t1.start1Gvermi8808.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 97051..97053 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8808.t1 ID=Gvermi8808.t1|Name=Gvermi8808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp
MGTSTEKDDKQHDQFVLKPFASKPELDTSNWPLLLKDYDKLNVRSSHFTP
IPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKKILRVDKTGHS
GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHGDLGENPVSKL
RRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDEKKRLAVFWVK
CEAGTYIRTLCVHLGYLLGVGGSMLELRRVRSGIMGEEENMVTMHDVLDA
MWVHDNQRDESYLRSVIQPLEALLVNYKRIVVKDTAVNAICYGAVLMIPG
VLRFDDDIEVSQEIVLITTKGEAIAIAIAEMNTAVIATCDHGRVARIKRV
IMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEHTPADWQKKYKDL
MLPQTEQPPNQNVSVALPENGEAKAGINGAAKKETAVDEAPSMEVEDAIT
PENKSDKKKKDKSSKKKRKREDAADAPESEKKKKKKKKKKKESTVDE*
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spliced messenger RNA

>Gvermi8808.t1 ID=Gvermi8808.t1|Name=Gvermi8808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at ScGOVlb_2241:95445..97053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACCTCTACGGAAAAGGATGACAAACAACACGACCAGTTTGTTCT
CAAACCGTTCGCATCTAAACCAGAGCTTGACACCTCAAACTGGCCTCTGC
TGCTCAAGGATTATGACAAGTTAAACGTGCGATCTTCTCACTTCACTCCT
ATCCCTGTCGGCCACTCGCCTCTTAAACGGCCCATACTGGAATATATGCG
CTATGGCGTCATTAATCTTGACAAACCGTCCAATCCGTCTTCACATGAAG
TTGTGGCATGGATCAAGAAAATCCTTCGTGTCGACAAGACTGGTCACTCT
GGTACCCTTGACCCGAAGGTAACCGGGAATCTAATCGTTTGCATCGACCG
TGCTACCAGGTTGGTGAAGTCCCAGCAGGGTGCGGGAAAGGAGTACATTG
GAGTGCTTAAACTTCACGGTGACCTGGGAGAAAACCCGGTTTCCAAACTC
CGAAGAGCAGTCGAAATGCTCACTGGAGCGTTGTTCCAAAGACCACCTCT
TATATCGGCTGTCAAGAGACAGCTTCGTATTCGAACGATCTATGAGGCGA
AGCTTCTTGAGTATGATGAAAAGAAACGTCTCGCAGTCTTCTGGGTCAAA
TGCGAAGCTGGCACCTACATTCGTACTCTTTGTGTACATTTGGGCTACCT
TCTAGGGGTAGGCGGTAGTATGCTTGAACTACGCCGCGTTCGTAGTGGTA
TCATGGGAGAGGAGGAAAACATGGTAACCATGCACGATGTTCTGGATGCC
ATGTGGGTTCATGACAACCAACGAGATGAATCATACTTGCGATCTGTCAT
TCAACCCCTCGAAGCACTTCTTGTTAACTATAAGCGTATCGTCGTAAAGG
ACACGGCAGTCAATGCTATTTGTTATGGCGCCGTCCTCATGATACCGGGT
GTGCTCAGATTTGACGATGACATCGAAGTTTCACAGGAAATCGTACTGAT
CACAACAAAAGGAGAAGCTATCGCTATTGCCATCGCTGAGATGAACACCG
CAGTGATTGCTACGTGTGATCATGGTCGTGTGGCGCGGATCAAACGTGTC
ATAATGGAAAGGGATACGTACCCTCGCGCATGGGGTCTTGGACCTGTTGC
GGGTAAGAAGAAAGGACTGATACGAGAGGGAAAACTTGACAAGCATGGGA
AACCCAACGAACATACGCCTGCCGATTGGCAGAAGAAGTACAAGGATTTG
ATGTTGCCGCAGACGGAACAACCGCCAAATCAAAACGTTTCCGTGGCTTT
ACCAGAAAACGGCGAAGCTAAGGCCGGCATAAATGGTGCGGCGAAGAAAG
AGACTGCCGTCGACGAGGCTCCTAGTATGGAAGTTGAAGACGCCATTACC
CCGGAAAACAAGAGTGATAAAAAGAAGAAAGACAAATCATCAAAGAAGAA
AAGGAAGAGAGAAGATGCAGCAGATGCACCAGAGTCCGAGAAGAAAAAGA
AGAAGAAGAAGAAGAAGAAGAAGGAGTCTACTGTGGATGAGTGA
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protein sequence of Gvermi8808.t1

>Gvermi8808.t1 ID=Gvermi8808.t1|Name=Gvermi8808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=498bp
MGTSTEKDDKQHDQFVLKPFASKPELDTSNWPLLLKDYDKLNVRSSHFTP
IPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKKILRVDKTGHS
GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHGDLGENPVSKL
RRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDEKKRLAVFWVK
CEAGTYIRTLCVHLGYLLGVGGSMLELRRVRSGIMGEEENMVTMHDVLDA
MWVHDNQRDESYLRSVIQPLEALLVNYKRIVVKDTAVNAICYGAVLMIPG
VLRFDDDIEVSQEIVLITTKGEAIAIAIAEMNTAVIATCDHGRVARIKRV
IMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEHTPADWQKKYKDL
MLPQTEQPPNQNVSVALPENGEAKAGINGAAKKETAVDEAPSMEVEDAIT
PENKSDKKKKDKSSKKKRKREDAADAPESEKKKKKKKKKKKESTVDE*
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mRNA from alignment at ScGOVlb_2241:95445..97053-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8808.t1 ID=Gvermi8808.t1|Name=Gvermi8808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1609bp|location=Sequence derived from alignment at ScGOVlb_2241:95445..97053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACCTCTACGGAAAAGGATGACAAACAACACGACCAGTTTGTTCT
CAAACCGTTCGCATCTGTACGTTTATCAAACCCCAATGCACAAGCTCAGA
TTCGTGCTTTCTTCCGTTATTCCTTACGCTTGGTTACAATCCCTGTCTAA
CCTCTATTTCATCCTTCCCGCGCAACACAAGAAACCAGAGCTTGACACCT
CAAACTGGCCTCTGCTGCTCAAGGATTATGACAAGTTAAACGTGCGATCT
TCTCACTTCACTCCTATCCCTGTCGGCCACTCGCCTCTTAAACGGCCCAT
ACTGGAATATATGCGCTATGGCGTCATTAATCTTGACAAACCGTCCAATC
CGTCTTCACATGAAGTTGTGGCATGGATCAAGAAAATCCTTCGTGTCGAC
AAGACTGGTCACTCTGGTACCCTTGACCCGAAGGTAACCGGGAATCTAAT
CGTTTGCATCGACCGTGCTACCAGGTTGGTGAAGTCCCAGCAGGGTGCGG
GAAAGGAGTACATTGGAGTGCTTAAACTTCACGGTGACCTGGGAGAAAAC
CCGGTTTCCAAACTCCGAAGAGCAGTCGAAATGCTCACTGGAGCGTTGTT
CCAAAGACCACCTCTTATATCGGCTGTCAAGAGACAGCTTCGTATTCGAA
CGATCTATGAGGCGAAGCTTCTTGAGTATGATGAAAAGAAACGTCTCGCA
GTCTTCTGGGTCAAATGCGAAGCTGGCACCTACATTCGTACTCTTTGTGT
ACATTTGGGCTACCTTCTAGGGGTAGGCGGTAGTATGCTTGAACTACGCC
GCGTTCGTAGTGGTATCATGGGAGAGGAGGAAAACATGGTAACCATGCAC
GATGTTCTGGATGCCATGTGGGTTCATGACAACCAACGAGATGAATCATA
CTTGCGATCTGTCATTCAACCCCTCGAAGCACTTCTTGTTAACTATAAGC
GTATCGTCGTAAAGGACACGGCAGTCAATGCTATTTGTTATGGCGCCGTC
CTCATGATACCGGGTGTGCTCAGATTTGACGATGACATCGAAGTTTCACA
GGAAATCGTACTGATCACAACAAAAGGAGAAGCTATCGCTATTGCCATCG
CTGAGATGAACACCGCAGTGATTGCTACGTGTGATCATGGTCGTGTGGCG
CGGATCAAACGTGTCATAATGGAAAGGGATACGTACCCTCGCGCATGGGG
TCTTGGACCTGTTGCGGGTAAGAAGAAAGGACTGATACGAGAGGGAAAAC
TTGACAAGCATGGGAAACCCAACGAACATACGCCTGCCGATTGGCAGAAG
AAGTACAAGGATTTGATGTTGCCGCAGACGGAACAACCGCCAAATCAAAA
CGTTTCCGTGGCTTTACCAGAAAACGGCGAAGCTAAGGCCGGCATAAATG
GTGCGGCGAAGAAAGAGACTGCCGTCGACGAGGCTCCTAGTATGGAAGTT
GAAGACGCCATTACCCCGGAAAACAAGAGTGATAAAAAGAAGAAAGACAA
ATCATCAAAGAAGAAAAGGAAGAGAGAAGATGCAGCAGATGCACCAGAGT
CCGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGTCTACTGTG
GATGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:95445..97053-

>Gvermi8808.t1 ID=Gvermi8808.t1|Name=Gvermi8808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1494bp|location=Sequence derived from alignment at ScGOVlb_2241:95445..97053- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACCTCTACGGAAAAGGATGACAAACAACACGACCAGTTTGTTCT
CAAACCGTTCGCATCTAAACCAGAGCTTGACACCTCAAACTGGCCTCTGC
TGCTCAAGGATTATGACAAGTTAAACGTGCGATCTTCTCACTTCACTCCT
ATCCCTGTCGGCCACTCGCCTCTTAAACGGCCCATACTGGAATATATGCG
CTATGGCGTCATTAATCTTGACAAACCGTCCAATCCGTCTTCACATGAAG
TTGTGGCATGGATCAAGAAAATCCTTCGTGTCGACAAGACTGGTCACTCT
GGTACCCTTGACCCGAAGGTAACCGGGAATCTAATCGTTTGCATCGACCG
TGCTACCAGGTTGGTGAAGTCCCAGCAGGGTGCGGGAAAGGAGTACATTG
GAGTGCTTAAACTTCACGGTGACCTGGGAGAAAACCCGGTTTCCAAACTC
CGAAGAGCAGTCGAAATGCTCACTGGAGCGTTGTTCCAAAGACCACCTCT
TATATCGGCTGTCAAGAGACAGCTTCGTATTCGAACGATCTATGAGGCGA
AGCTTCTTGAGTATGATGAAAAGAAACGTCTCGCAGTCTTCTGGGTCAAA
TGCGAAGCTGGCACCTACATTCGTACTCTTTGTGTACATTTGGGCTACCT
TCTAGGGGTAGGCGGTAGTATGCTTGAACTACGCCGCGTTCGTAGTGGTA
TCATGGGAGAGGAGGAAAACATGGTAACCATGCACGATGTTCTGGATGCC
ATGTGGGTTCATGACAACCAACGAGATGAATCATACTTGCGATCTGTCAT
TCAACCCCTCGAAGCACTTCTTGTTAACTATAAGCGTATCGTCGTAAAGG
ACACGGCAGTCAATGCTATTTGTTATGGCGCCGTCCTCATGATACCGGGT
GTGCTCAGATTTGACGATGACATCGAAGTTTCACAGGAAATCGTACTGAT
CACAACAAAAGGAGAAGCTATCGCTATTGCCATCGCTGAGATGAACACCG
CAGTGATTGCTACGTGTGATCATGGTCGTGTGGCGCGGATCAAACGTGTC
ATAATGGAAAGGGATACGTACCCTCGCGCATGGGGTCTTGGACCTGTTGC
GGGTAAGAAGAAAGGACTGATACGAGAGGGAAAACTTGACAAGCATGGGA
AACCCAACGAACATACGCCTGCCGATTGGCAGAAGAAGTACAAGGATTTG
ATGTTGCCGCAGACGGAACAACCGCCAAATCAAAACGTTTCCGTGGCTTT
ACCAGAAAACGGCGAAGCTAAGGCCGGCATAAATGGTGCGGCGAAGAAAG
AGACTGCCGTCGACGAGGCTCCTAGTATGGAAGTTGAAGACGCCATTACC
CCGGAAAACAAGAGTGATAAAAAGAAGAAAGACAAATCATCAAAGAAGAA
AAGGAAGAGAGAAGATGCAGCAGATGCACCAGAGTCCGAGAAGAAAAAGA
AGAAGAAGAAGAAGAAGAAGAAGGAGTCTACTGTGGATGAGTGA
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