Gvermi8760.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8760.t1
Unique NameGvermi8760.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_627contigScGOVlb_627:1503..1877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7237.FBpp0288096
Preferred namecec-3
PFAMsChromo
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0008150,GO:0009892,GO:0010468,GO:0010605,GO:0010629,GO:0019222,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048519,GO:0050789,GO:0060255,GO:0065007
Evalue0.00016
EggNOG OGsKOG1911@1|root,KOG1911@2759|Eukaryota,3A4DJ@33154|Opisthokonta,3BRD1@33208|Metazoa,3DC1G@33213|Bilateria,42AGJ@6656|Arthropoda,3SZXY@50557|Insecta,4595P@7147|Diptera,45PZE@7214|Drosophilidae
DescriptionChromatin organization modifier domain
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8760Gvermi8760Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_627 1503..1877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8760.t1.stop1Gvermi8760.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_627 1503..1505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8760.t1.CDS1Gvermi8760.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_627 1503..1877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8760.t1.exon1Gvermi8760.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_627 1503..1877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8760.t1Gvermi8760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_627 1503..1877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=125bp
APREQEPQEETAAPQDPDTGSNAPYTNLQTPPGSTFPELLQARPVSADPT
FIRDEEMPSEVFEDEIDAREWVVDRVVDEAVAQDGTPIVKVRWYGFLPSW
DSWEPTANIPPNFVVRYWSRRQKS*
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spliced messenger RNA

>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp|location=Sequence derived from alignment at ScGOVlb_627:1503..1877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GCCCCACGAGAACAGGAGCCTCAAGAAGAAACCGCTGCACCTCAGGACCC
CGACACGGGAAGCAACGCCCCCTACACGAACCTTCAAACCCCACCGGGGT
CAACCTTCCCCGAACTTTTACAGGCAAGGCCGGTTTCGGCTGACCCTACC
TTTATTCGGGACGAAGAGATGCCCTCTGAGGTGTTCGAAGACGAGATTGA
TGCCCGTGAATGGGTCGTGGACAGGGTAGTTGATGAAGCGGTCGCCCAAG
ACGGGACACCCATCGTCAAGGTTCGATGGTATGGTTTTCTACCCTCATGG
GACTCGTGGGAGCCAACGGCCAACATTCCACCAAACTTCGTTGTTCGATA
CTGGTCGCGCCGGCAAAAGAGCTGA
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protein sequence of Gvermi8760.t1

>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=125bp
APREQEPQEETAAPQDPDTGSNAPYTNLQTPPGSTFPELLQARPVSADPT
FIRDEEMPSEVFEDEIDAREWVVDRVVDEAVAQDGTPIVKVRWYGFLPSW
DSWEPTANIPPNFVVRYWSRRQKS*
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mRNA from alignment at ScGOVlb_627:1503..1877-

Legend: polypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp|location=Sequence derived from alignment at ScGOVlb_627:1503..1877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GCCCCACGAGAACAGGAGCCTCAAGAAGAAACCGCTGCACCTCAGGACCC
CGACACGGGAAGCAACGCCCCCTACACGAACCTTCAAACCCCACCGGGGT
CAACCTTCCCCGAACTTTTACAGGCAAGGCCGGTTTCGGCTGACCCTACC
TTTATTCGGGACGAAGAGATGCCCTCTGAGGTGTTCGAAGACGAGATTGA
TGCCCGTGAATGGGTCGTGGACAGGGTAGTTGATGAAGCGGTCGCCCAAG
ACGGGACACCCATCGTCAAGGTTCGATGGTATGGTTTTCTACCCTCATGG
GACTCGTGGGAGCCAACGGCCAACATTCCACCAAACTTCGTTGTTCGATA
CTGGTCGCGCCGGCAAAAGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_627:1503..1877-

>Gvermi8760.t1 ID=Gvermi8760.t1|Name=Gvermi8760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=375bp|location=Sequence derived from alignment at ScGOVlb_627:1503..1877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GCCCCACGAGAACAGGAGCCTCAAGAAGAAACCGCTGCACCTCAGGACCC
CGACACGGGAAGCAACGCCCCCTACACGAACCTTCAAACCCCACCGGGGT
CAACCTTCCCCGAACTTTTACAGGCAAGGCCGGTTTCGGCTGACCCTACC
TTTATTCGGGACGAAGAGATGCCCTCTGAGGTGTTCGAAGACGAGATTGA
TGCCCGTGAATGGGTCGTGGACAGGGTAGTTGATGAAGCGGTCGCCCAAG
ACGGGACACCCATCGTCAAGGTTCGATGGTATGGTTTTCTACCCTCATGG
GACTCGTGGGAGCCAACGGCCAACATTCCACCAAACTTCGTTGTTCGATA
CTGGTCGCGCCGGCAAAAGAGCTGA
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