Gvermi876.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi876.t1
Unique Name	Gvermi876.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:771783..773279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008449507.1
PFAMs	Metallophos,PPP5,TPR_1,TPR_11,TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K04460
KEGG Pathway	ko04010,map04010
GOs	GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005911,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1902325
Evalue	5.36e-176
EggNOG OGs	COG0639@1\|root,KOG0376@2759\|Eukaryota,37IEQ@33090\|Viridiplantae,3GC8Z@35493\|Streptophyta,4JIXH@91835\|fabids
EC	3.1.3.16
Description	serine threonine-protein phosphatase
COG category	Z
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi876	Gvermi876	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 771783..773279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi876.t1.start1	Gvermi876.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2952 771783..771785 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi876.t1.CDS1	Gvermi876.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 771783..773279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi876.t1.exon1	Gvermi876.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 771783..773279 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi876.t1.stop1	Gvermi876.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 773277..773279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi876.t1	Gvermi876.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 771783..773279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:771783..773279+
coding sequence from alignment at ScGOVlb_2952:771783..773279+

mRNA sequence

>Gvermi876.t1 ID=Gvermi876.t1|Name=Gvermi876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=499bp
MSAQVLCNENIDPITQLKKQANDCFKNNRFHEAEHLYTEALSKALSTQVD
PKTHAVLLANRAFTRIKLEQYGYAINDATMALSHDPNYIKAYYRRGSAYF
ALSRYKDAKRDYAIIAQRIPDNKDTAAKLKECEKRIKEAAFAKAIESDSL
RVRVCDTLDVASITVPDSYDGPRIQDDGQLTEQFVRHLIESFRNQKSLHI
KYAAMIVLAAKAIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLANGIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLMAFKVWCPDAIHLTRGNHE
SLNMNRIYGFEGEVRAKYTETIFNLFTETFQSLPLAYILDGSSTSDGRKA
FVVHGGLFSKDGVTIADINALDRKCEPDAGIMAEMLWSDPQDENGWGPSK
RGIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDAGYEVSANGRLVTIFSAP
NYCDQMGNQGAYIKFKSDMEPSFVQFGAVPHPHVPPMQYASKLLMGSQ*

spliced messenger RNA

>Gvermi876.t1 ID=Gvermi876.t1|Name=Gvermi876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_2952:771783..773279+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTCAAGTACTTTGCAACGAAAACATTGACCCCATCACTCAACT
CAAGAAGCAGGCCAACGATTGCTTCAAGAACAACCGTTTCCATGAGGCGG
AGCACTTGTACACCGAAGCACTCAGCAAAGCTCTTTCCACCCAAGTTGAC
CCTAAGACGCACGCCGTCTTGTTGGCCAATCGCGCTTTCACCAGAATAAA
ACTCGAACAGTACGGATATGCCATCAACGACGCCACCATGGCCCTTTCCC
ACGACCCCAACTACATCAAGGCCTACTACCGCCGCGGCAGCGCGTACTTT
GCCCTCAGCAGGTACAAGGATGCCAAGAGGGACTACGCCATCATTGCCCA
GAGAATCCCGGACAACAAGGACACCGCCGCAAAACTCAAGGAGTGCGAGA
AGCGCATCAAGGAGGCCGCTTTTGCAAAGGCTATCGAGAGCGACTCGCTG
CGCGTCCGCGTCTGTGATACCCTCGATGTCGCTTCCATCACCGTCCCCGA
CTCGTATGACGGCCCGAGAATACAGGACGACGGTCAGCTCACCGAACAGT
TTGTGCGCCACCTCATCGAAAGCTTCCGAAACCAGAAAAGCTTGCACATC
AAGTACGCCGCCATGATCGTGCTCGCCGCCAAGGCCATTTTTGATCAGTT
GCCCAACGTTGTTGAATTGCCCGTCACCGCCGGCAATTCCATCACCGTTT
GCGGCGATGTGCACGGCCAGTATTACGATCTTGCCAATGGCATTTTCGAA
CGCAATGGGCTCCCAAGCGCCAAGAACCCCTATCTGTTCAATGGTGACTT
TGTTGACCGCGGTTCCTTCAGCGTCGAAGTCATCCTCACTTTGATGGCTT
TCAAGGTGTGGTGTCCTGACGCCATACACCTCACACGCGGCAATCACGAG
TCGCTCAACATGAATCGCATTTATGGATTTGAAGGAGAAGTGAGGGCCAA
GTACACCGAGACCATATTTAATTTGTTTACCGAGACTTTCCAGAGCTTAC
CTCTGGCCTACATCCTCGACGGAAGCAGCACATCGGATGGGCGCAAAGCT
TTCGTTGTTCATGGCGGTCTGTTCTCCAAGGACGGTGTCACTATTGCTGA
CATCAACGCCCTTGACAGAAAATGCGAGCCGGACGCGGGAATAATGGCTG
AAATGCTCTGGAGCGATCCGCAGGATGAAAACGGATGGGGCCCTTCTAAG
AGAGGTATAGGTGTCGCTTTCGGTCCTGACGTGACGCATCGCTTTTTGGA
CCTTAATGGTCTCGACATTGTAGTCAGATCCCACGAAATGAAGGATGCCG
GGTATGAAGTGTCCGCAAATGGTCGCCTTGTCACAATTTTCTCAGCTCCT
AACTATTGTGATCAAATGGGAAATCAGGGTGCTTATATCAAGTTCAAGTC
AGATATGGAACCTTCTTTTGTTCAATTCGGTGCTGTGCCCCATCCGCATG
TTCCGCCAATGCAATATGCCTCCAAATTGCTCATGGGATCGCAGTGA

protein sequence of Gvermi876.t1

>Gvermi876.t1 ID=Gvermi876.t1|Name=Gvermi876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=499bp
MSAQVLCNENIDPITQLKKQANDCFKNNRFHEAEHLYTEALSKALSTQVD
PKTHAVLLANRAFTRIKLEQYGYAINDATMALSHDPNYIKAYYRRGSAYF
ALSRYKDAKRDYAIIAQRIPDNKDTAAKLKECEKRIKEAAFAKAIESDSL
RVRVCDTLDVASITVPDSYDGPRIQDDGQLTEQFVRHLIESFRNQKSLHI
KYAAMIVLAAKAIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLANGIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLMAFKVWCPDAIHLTRGNHE
SLNMNRIYGFEGEVRAKYTETIFNLFTETFQSLPLAYILDGSSTSDGRKA
FVVHGGLFSKDGVTIADINALDRKCEPDAGIMAEMLWSDPQDENGWGPSK
RGIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDAGYEVSANGRLVTIFSAP
NYCDQMGNQGAYIKFKSDMEPSFVQFGAVPHPHVPPMQYASKLLMGSQ*

mRNA from alignment at ScGOVlb_2952:771783..773279+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi876.t1 ID=Gvermi876.t1|Name=Gvermi876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_2952:771783..773279+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTCAAGTACTTTGCAACGAAAACATTGACCCCATCACTCAACT
CAAGAAGCAGGCCAACGATTGCTTCAAGAACAACCGTTTCCATGAGGCGG
AGCACTTGTACACCGAAGCACTCAGCAAAGCTCTTTCCACCCAAGTTGAC
CCTAAGACGCACGCCGTCTTGTTGGCCAATCGCGCTTTCACCAGAATAAA
ACTCGAACAGTACGGATATGCCATCAACGACGCCACCATGGCCCTTTCCC
ACGACCCCAACTACATCAAGGCCTACTACCGCCGCGGCAGCGCGTACTTT
GCCCTCAGCAGGTACAAGGATGCCAAGAGGGACTACGCCATCATTGCCCA
GAGAATCCCGGACAACAAGGACACCGCCGCAAAACTCAAGGAGTGCGAGA
AGCGCATCAAGGAGGCCGCTTTTGCAAAGGCTATCGAGAGCGACTCGCTG
CGCGTCCGCGTCTGTGATACCCTCGATGTCGCTTCCATCACCGTCCCCGA
CTCGTATGACGGCCCGAGAATACAGGACGACGGTCAGCTCACCGAACAGT
TTGTGCGCCACCTCATCGAAAGCTTCCGAAACCAGAAAAGCTTGCACATC
AAGTACGCCGCCATGATCGTGCTCGCCGCCAAGGCCATTTTTGATCAGTT
GCCCAACGTTGTTGAATTGCCCGTCACCGCCGGCAATTCCATCACCGTTT
GCGGCGATGTGCACGGCCAGTATTACGATCTTGCCAATGGCATTTTCGAA
CGCAATGGGCTCCCAAGCGCCAAGAACCCCTATCTGTTCAATGGTGACTT
TGTTGACCGCGGTTCCTTCAGCGTCGAAGTCATCCTCACTTTGATGGCTT
TCAAGGTGTGGTGTCCTGACGCCATACACCTCACACGCGGCAATCACGAG
TCGCTCAACATGAATCGCATTTATGGATTTGAAGGAGAAGTGAGGGCCAA
GTACACCGAGACCATATTTAATTTGTTTACCGAGACTTTCCAGAGCTTAC
CTCTGGCCTACATCCTCGACGGAAGCAGCACATCGGATGGGCGCAAAGCT
TTCGTTGTTCATGGCGGTCTGTTCTCCAAGGACGGTGTCACTATTGCTGA
CATCAACGCCCTTGACAGAAAATGCGAGCCGGACGCGGGAATAATGGCTG
AAATGCTCTGGAGCGATCCGCAGGATGAAAACGGATGGGGCCCTTCTAAG
AGAGGTATAGGTGTCGCTTTCGGTCCTGACGTGACGCATCGCTTTTTGGA
CCTTAATGGTCTCGACATTGTAGTCAGATCCCACGAAATGAAGGATGCCG
GGTATGAAGTGTCCGCAAATGGTCGCCTTGTCACAATTTTCTCAGCTCCT
AACTATTGTGATCAAATGGGAAATCAGGGTGCTTATATCAAGTTCAAGTC
AGATATGGAACCTTCTTTTGTTCAATTCGGTGCTGTGCCCCATCCGCATG
TTCCGCCAATGCAATATGCCTCCAAATTGCTCATGGGATCGCAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_2952:771783..773279+

>Gvermi876.t1 ID=Gvermi876.t1|Name=Gvermi876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1497bp|location=Sequence derived from alignment at ScGOVlb_2952:771783..773279+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTCAAGTACTTTGCAACGAAAACATTGACCCCATCACTCAACT
CAAGAAGCAGGCCAACGATTGCTTCAAGAACAACCGTTTCCATGAGGCGG
AGCACTTGTACACCGAAGCACTCAGCAAAGCTCTTTCCACCCAAGTTGAC
CCTAAGACGCACGCCGTCTTGTTGGCCAATCGCGCTTTCACCAGAATAAA
ACTCGAACAGTACGGATATGCCATCAACGACGCCACCATGGCCCTTTCCC
ACGACCCCAACTACATCAAGGCCTACTACCGCCGCGGCAGCGCGTACTTT
GCCCTCAGCAGGTACAAGGATGCCAAGAGGGACTACGCCATCATTGCCCA
GAGAATCCCGGACAACAAGGACACCGCCGCAAAACTCAAGGAGTGCGAGA
AGCGCATCAAGGAGGCCGCTTTTGCAAAGGCTATCGAGAGCGACTCGCTG
CGCGTCCGCGTCTGTGATACCCTCGATGTCGCTTCCATCACCGTCCCCGA
CTCGTATGACGGCCCGAGAATACAGGACGACGGTCAGCTCACCGAACAGT
TTGTGCGCCACCTCATCGAAAGCTTCCGAAACCAGAAAAGCTTGCACATC
AAGTACGCCGCCATGATCGTGCTCGCCGCCAAGGCCATTTTTGATCAGTT
GCCCAACGTTGTTGAATTGCCCGTCACCGCCGGCAATTCCATCACCGTTT
GCGGCGATGTGCACGGCCAGTATTACGATCTTGCCAATGGCATTTTCGAA
CGCAATGGGCTCCCAAGCGCCAAGAACCCCTATCTGTTCAATGGTGACTT
TGTTGACCGCGGTTCCTTCAGCGTCGAAGTCATCCTCACTTTGATGGCTT
TCAAGGTGTGGTGTCCTGACGCCATACACCTCACACGCGGCAATCACGAG
TCGCTCAACATGAATCGCATTTATGGATTTGAAGGAGAAGTGAGGGCCAA
GTACACCGAGACCATATTTAATTTGTTTACCGAGACTTTCCAGAGCTTAC
CTCTGGCCTACATCCTCGACGGAAGCAGCACATCGGATGGGCGCAAAGCT
TTCGTTGTTCATGGCGGTCTGTTCTCCAAGGACGGTGTCACTATTGCTGA
CATCAACGCCCTTGACAGAAAATGCGAGCCGGACGCGGGAATAATGGCTG
AAATGCTCTGGAGCGATCCGCAGGATGAAAACGGATGGGGCCCTTCTAAG
AGAGGTATAGGTGTCGCTTTCGGTCCTGACGTGACGCATCGCTTTTTGGA
CCTTAATGGTCTCGACATTGTAGTCAGATCCCACGAAATGAAGGATGCCG
GGTATGAAGTGTCCGCAAATGGTCGCCTTGTCACAATTTTCTCAGCTCCT
AACTATTGTGATCAAATGGGAAATCAGGGTGCTTATATCAAGTTCAAGTC
AGATATGGAACCTTCTTTTGTTCAATTCGGTGCTGTGCCCCATCCGCATG
TTCCGCCAATGCAATATGCCTCCAAATTGCTCATGGGATCGCAGTGA